Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Zhang (2020)	Genetic diversity, complicated recombination and deteriorating drug resistance among HIV-1 infected individuals in Wuhan, China	AIDS Res Hum Retroviruses. 2021 Mar;37(3):246-251.	5.9e-163	98	98	Naive	Plasma	Direct PCR	Molecular epidemiology

Download sequences

Accession	IsolateName	Country	Coll Date	MolType	Note	FirstAA	LastAA	MutList
MT582981	HBE001	China	29-Dec-2018	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,31G,33N,54M,58I,83T,87Q,92P,96I,104V,116A,128D,148V,178T,200S,207S,208G,225S
MT582982	HBE002	China	04-Jan-2019	genomic RNA	subtype: CRF_55	1	231	6A,14P,15V,31G,33N,54M,58I,83T,92P,107S,120S,128D,148V,178T,200S,207T,208G,225S
MT582983	HBE003	China	04-Jan-2019	genomic RNA	subtype: CRF_55	1	231	6A,14P,15L,31G,33N,54M,58I,83A,92P,128D,148V,178T,200S,207T,208G,225S
MT582984	HBE004	China	18-Jan-2019	genomic RNA	subtype: CRF_01	1	231	6A,15V,31G,33N,54M,58I,79D,83T,87Q,91F,92P,96I,116A,128D,148V,159G,178T,200A,207T,208G,225S
MT582985	HBE005	China	12-Feb-2019	genomic RNA	subtype: B	1	231	6L,14P,41T,79D,83T,91N,92P,120S,180D,199R,225S
MT582986	HBE006	China	11-Mar-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15L,31G,33N,54M,58I,79D,83T,92P,96I,112A,116A,128D,148V,178T,200S,207T,208G,225S
MT582987	HBE007	China	11-Mar-2019	genomic RNA	subtype: B	1	231	6L,14P,41T,83L,86A,87Q,91L,96I,154K,180D,199R,225S,230I
MT582988	HBE009	China	05-Jul-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,31G,33N,54C,58I,83T,87Q,92P,96I,116A,128D,146R,148V,178T,200S,207T,208G,225S
MT582989	HBE010	China	15-Jul-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,31G,32I,33N,54M,58I,83T,87Q,92P,96I,116A,128D,129L,148V,178T,191I,204S,207T,208G,225S
MT582990	HBE012	China	29-Jul-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83L,87Q,96I,110N,116A,120S,148V,178T,200S,207T,208G,225S
MT582991	HBN001	China	03-Jan-2019	genomic RNA	subtype: CRF_80	1	231	6A,14P,15V,31G,33N,54M,58I,79D,92P,120S,128D,148V,178T,200S,207S,208G,225S
MT582992	HBN002	China	03-Jan-2019	genomic RNA	subtype: CRF_07	1	231	6L,14P,68I,71D,83L,86I,96I,116AT,120S,124IV,128D,148V,178T,200S,207S,208G,225S
MT582993	HBN003	China	04-Jan-2019	genomic RNA	subtype: CRF_01	1	231	6A,15V,31G,33N,54M,58I,83T,87Q,91F,92P,96L,116A,120H,128D,148V,178T,204S,207T,208G,225S
MT582994	HBN004	China	04-Jan-2019	genomic RNA	subtype: CRF_07	1	231	6M,14P,41T,68I,71D,83I,116A,120A,121T,124V,135V,154K,169F,171V,178T,180D,203R,208G,210S,211I,225S
MT582995	HBN005	China	04-Jan-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,31G,33N,54M,58I,83L,92P,120S,128D,148V,178T,200S,207T,208G,225S
MT582996	HBN006	China	04-Jan-2019	genomic RNA	subtype: CRF_07	1	231	14P,68I,71D,83L,86A,87Q,96I,98D,116T,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT582997	HBN007	China	07-Jan-2019	genomic RNA	subtype: CRF_07	1	231	6L,14P,41T,68I,71D,83L,91AV,96MV,116T,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I
MT582998	HBN008	China	09-Jan-2019	genomic RNA	subtype: CRF_07	1	231	6L,14P,68I,71D,83L,116A,120G,124V,128D,129L,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT582999	HBN009	China	14-Jan-2019	genomic RNA	subtype: CRF_01	1	231	6A,11A,14S,15L,31G,33N,54M,58I,83T,87Q,92P,96I,110N,116A,128D,148V,178T,200S,207T,208G,225S
MT583000	HBN010	China	15-Jan-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,24A,31G,33N,58I,79D,83M,86T,87Q,91L,92P,96I,110S,116A,128D,148V,155L,178T,200A,203R,207T,208G,225S
MT583001	HBN011	China	15-Jan-2019	genomic RNA	subtype: CRF_07	1	231	6A,14P,15V,24A,31G,33N,58I,79D,83M,86T,87Q,91L,92P,96I,110S,116A,128D,148V,178T,200A,203R,207T,208G,225S
MT583002	HBN012	China	18-Jan-2019	genomic RNA	subtype: CRF_07	1	231	12Y,14S,41T,68I,71D,83L,91N,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211V,225S
MT583003	HBN013	China	18-Jan-2019	genomic RNA	subtype: CRF_07	1	231	12Y,14S,41T,68I,71D,83L,91N,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211V,225S
MT583004	HBN014	China	21-Jan-2019	genomic RNA	subtype: 0755	1	231	6L,14P,68I,71D,83L,116A,120AG,124V,128D,129IL,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583005	HBN015	China	22-Jan-2019	genomic RNA	subtype: CRF_07	1	231	6L,68I,71D,83L,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT582979	HBN016	China	19-Feb-2019	genomic RNA	subtype: CRF_07	1	231	6L,15L,68I,71D,83L,110N,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583006	HBN017	China	19-Feb-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,31G,33N,41T,54M,58I,83T,86A,87Q,91F,92P,96L,110N,116A,128D,135V,148I,178T,200S,207T,208G,225S
MT583007	HBN018	China	22-Feb-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,31G,33N,54M,58I,71D,83L,110N,116A,128D,148V,149G,183H,200S,207T,208G,225S
MT583008	HBN019	China	25-Feb-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,120NS,128D,148V,178T,200S,207T,208G,225S
MT583009	HBN020	China	26-Feb-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,86A,87Q,91F,92P,96L,116A,120H,132K,139H,148V,178T,204S,207T,208G,225S
MT583010	HBN021	China	26-Feb-2019	genomic RNA	subtype: CRF_07	1	231	14P,68I,71D,83L,110N,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583011	HBN022	China	28-Feb-2019	genomic RNA	subtype: CRF_55	1	231	6A,14P,15V,31G,33N,54M,58I,83T,86I,92P,128D,148V,178T,200S,207T,208G,225S
MT583012	HBN023	China	28-Feb-2019	genomic RNA	subtype: CRF_55	1	231	6A,14P,15V,31G,33N,54M,58I,61E,83T,92P,128D,146R,148V,178T,200S,207T,208G,225S
MT583013	HBN024	China	01-Mar-2019	genomic RNA	subtype: CRF_07	1	231	6L,14P,15L,68I,71D,83L,86I,91V,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583014	HBN025	China	04-Mar-2019	genomic RNA	subtype: CRF_07	1	231	6L,14S,41T,71D,75D,83L,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583015	HBN026	China	04-Mar-2019	genomic RNA	subtype: CRF_55	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,207T,208G,225S
MT583016	HBN027	China	04-Mar-2019	genomic RNA	subtype: CRF_07	1	231	6L,14P,68I,71D,83L,86I,96I,116A,120G,124V,128D,136M,141V,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583017	HBN028	China	05-Mar-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87P,88V,91F,92P,96I,116A,120S,128D,148V,178T,204S,207T,208G,225S
MT583018	HBN029	China	05-Mar-2019	genomic RNA	subtype: 0755	1	231	6L,14P,71D,83L,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,229K
MT583019	HBN030	China	05-Mar-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116V,128D,148V,178T,200S,207T,208G,225S
MT583020	HBN031	China	11-Mar-2019	genomic RNA	subtype: CRF_08	1	231	6L,14P,15L,41T,71D,83L,91A,120S,154K,169F,178T,180D,187D,203R,208Q,225S
MT583021	HBN032	China	14-Mar-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,128D,148V,178T,204S,207T,208G,225S
MT583022	HBN033	China	14-Mar-2019	genomic RNA	subtype: CRF_01	1	231	6T,14P,15L,31G,33N,41T,54M,58I,68I,78V,92P,120S,123A,128D,148V,149G,200S,207G,208G,225S
MT583023	HBN034	China	14-Mar-2019	genomic RNA	subtype: CRF_55	1	231	6A,14P,31G,33N,54M,58I,92P,110N,128D,148V,178T,200S,207T,208G,225S
MT583024	HBN035	China	15-Mar-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,110N,116A,128D,148V,178T,200S,207T,208G,225S
MT583025	HBN036	China	15-Mar-2019	genomic RNA	subtype: B	1	231	6L,14P,41T,83I,91N,92P,110N,120S,180D,199R,225S
MT583026	HBN037	China	18-Mar-2019	genomic RNA	subtype: CRF_07	1	231	6L,14P,15L,68I,71D,83L,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583027	HBN038	China	18-Mar-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15L,31G,33N,54M,58I,83L,92P,128D,148V,149G,154K,178T,200S,207T,208G,225S
MT583028	HBN039	China	18-Mar-2019	genomic RNA	subtype: CRF_07	1	231	6L,11A,12Y,14S,15L,41T,44A,68I,71D,83L,110N,116A,120S,124V,128D,154K,169F,178T,180D,187D,191I,203R,208G,210S,211I
MT583029	HBN040	China	22-Mar-2019	genomic RNA	subtype: CRF_01	1	231	6A,14S,15L,31G,33N,54M,58I,83T,92P,96I,110N,116A,128D,148V,178T,204S,207T,208G,225S
MT583030	HBN041	China	26-Mar-2019	genomic RNA	subtype: 0755	1	231	6L,68I,71D,83L,86I,110N,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583031	HBN042	China	01-Apr-2019	genomic RNA	subtype: CRF_01	1	231	6A,15V,31G,33N,54M,58I,83I,87Q,92P,94N,96I,116T,120S,128D,148V,178T,200S,207T,208G,225S
MT583032	HBN043	China	01-Apr-2019	genomic RNA	subtype: CRF_59	1	231	6A,10W,11T,15V,31G,33N,54M,58I,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
MT583033	HBN044	China	02-Apr-2019	genomic RNA	subtype: CRF_07	1	231	6L,14P,68I,71D,83L,86I,91P,96V,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583034	HBN046	China	15-Jul-2019	genomic RNA	subtype: CRF_07	1	231	6L,14P,68I,71D,83L,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583035	HBN047	China	15-Jul-2019	genomic RNA	subtype: CRF_07	1	231	14P,41T,68I,71D,83L,86A,87Q,96I,116T,120G,128D,132K,136M,154K,169F,178T,180D,187D,203R,208G,210S,211V,225S
MT583036	HBN048	China	15-Jul-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,31G,33N,54M,58I,71D,83L,87Q,92P,120S,126I,128D,148V,149G,187Q,200S,203R,204S,207T,208G,225S
MT583037	HBN049	China	16-Jul-2019	genomic RNA	subtype: CRF_07	1	231	6L,14P,41T,68I,71D,83L,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583038	HBN050	China	16-Jul-2019	genomic RNA	subtype: CRF_07	1	231	14P,68I,71D,83L,116A,120A,123A,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583039	HBN051	China	18-Jul-2019	genomic RNA	subtype: CRF_07	1	231	6L,15L,68I,71D,83L,91V,116A,120S,124V,128D,136M,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583040	HBN052	China	19-Jul-2019	genomic RNA	subtype: CRF_01	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,207T,208G,225S
MT582980	HBN053	China	19-Jul-2019	genomic RNA	subtype: CRF_01	1	231	6A,14S,15L,31G,33N,54M,58I,91N,92P,120G,123A,148I,200S,207T,208G,210S,225S
MT583041	HBN054	China	19-Jul-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,92P,96I,110N,116A,128D,148V,200S,207T,208G,225S
MT583042	HBN055	China	22-Jul-2019	genomic RNA	subtype: CRF_07	1	231	2V,6L,14P,41T,68I,71D,83L,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583043	HBN056	China	23-Jul-2019	genomic RNA	subtype: CRF_07	1	231	3I,6L,14P,41T,68I,71D,83L,96IM,113DE,116A,120A,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583044	HBN057	China	24-Jul-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,31G,33N,54M,58I,79D,83T,86A,87Q,91F,92P,96I,116A,120H,128D,148V,178T,204S,207T,208G,225S
MT583045	HBN058	China	25-Jul-2019	genomic RNA	subtype: B	1	231	6L,16A,41V,83L,96L,116A,120H,123A,132K,135V,148S,154K,225S
MT583046	HBN059	China	25-Jul-2019	genomic RNA	subtype: CRF_07	1	231	6L,14P,68I,71D,83L,110N,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583047	HBN060	China	30-Jul-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,31G,33N,54M,58I,83I,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
MT583048	HBN061	China	30-Jul-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
MT583049	HBN062	China	30-Jul-2019	genomic RNA	subtype: CRF_07	1	231	6L,14P,41T,68I,71D,79D,83L,96I,116T,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211V,225S
MT583050	HBN063	China	30-Jul-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,31G,33N,53D,54M,58I,91A,92P,120S,128D,148V,149G,199R,200S,207S,208G,225S
MT583051	HBN064	China	13-Aug-2019	genomic RNA	subtype: 0107	1	231	6L,11A,12Y,14S,15L,68I,71D,83L,116A,120S,124V,128D,154K,169F,171C,178T,180D,187D,203R,208G,210S,211I,225S
MT583052	HBN065	China	13-Aug-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,98D,116A,128D,148V,178T,200S,207T,208G,225S
MT583053	HBN066	China	13-Aug-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,31G,33N,54M,58I,83T,87Q,92P,96I,116A,120S,128D,129L,148V,178T,200S,207T,208G
MT583054	HBN068	China	27-Aug-2019	genomic RNA	subtype: CRF_07	1	231	6L,14P,68I,71D,83L,91N,96I,110N,116A,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583055	HBN069	China	27-Aug-2019	genomic RNA	subtype: 0755	1	231	6L,14P,71D,83L,91V,110N,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I
MT583056	HBN070	China	29-Aug-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,31G,33N,54M,58I,83T,92P,116A,123S,128D,148V,178T,200S,207T,208G,225S
MT583057	HBN071	China	29-Aug-2019	genomic RNA	subtype: CRF_07	1	231	14P,68I,71D,83L,91V,116A,120S,124V,128D,149C,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583058	HBN072	China	29-Aug-2019	genomic RNA	subtype: CRF_07	1	231	14P,68I,71D,83L,96I,116T,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I
MT583059	HBN073	China	02-Sep-2019	genomic RNA	subtype: 0759	1	231	2V,6L,14P,41T,68I,71D,83L,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583060	HBN074	China	06-Sep-2019	genomic RNA	subtype: CRF_07	1	231	6L,14P,41T,68I,71D,83L,96I,116T,120G,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211V,225S
MT583061	HBN075	China	28-Oct-2019	genomic RNA	subtype: 0107	1	231	14P,41T,68I,71D,83L,116A,120S,121T,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211V,225S
MT583062	HBN076	China	01-Nov-2019	genomic RNA	subtype: CRF_01	1	231	6A,14S,15M,27I,31G,33N,47S,54M,58I,83T,87Q,92P,96I,110N,115V,116A,128D,154K,178T,204S,207T,208G,225S
MT583063	HBN077	China	04-Nov-2019	genomic RNA	subtype: CRF_07	1	231	6L,14P,15L,68I,71D,83L,110N,116A,120S,124V,128D,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583064	HBN078	China	04-Nov-2019	genomic RNA	subtype: CRF_01	1	231	6A,14S,15L,31G,33N,54M,58I,92P,110N,120S,128D,148V,154K,178T,200S,207A,208G,225S
MT583065	HBN079	China	04-Nov-2019	genomic RNA	subtype: 0755	1	231	6L,14P,68I,71D,79D,83L,96I,116A,118I,120S,124V,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583066	HBN080	China	04-Nov-2019	genomic RNA	subtype: CRF_07	1	231	3I,6L,41T,68I,71D,83L,116A,120A,124V,128D,136M,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583067	HBN082	China	05-Nov-2019	genomic RNA	subtype: CRF_07	1	231	6L,14P,68I,71D,83L,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583068	HBN083	China	05-Nov-2019	genomic RNA	subtype: CRF_01	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,92P,96I,110N,116A,128D,148V,178T,204S,207T,208G,225S
MT583069	HBN084	China	05-Nov-2019	genomic RNA	subtype: CRF_01	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,207T,208G,225S
MT583070	HBN085	China	08-Nov-2019	genomic RNA	subtype: 0755	1	231	6L,14P,41T,71D,116A,120S,124V,128D,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583071	HBN086	China	08-Nov-2019	genomic RNA	subtype: 0107	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G,225S
MT583072	HBN087	China	11-Nov-2019	genomic RNA	subtype: 0107	1	231	3I,6V,12Y,14S,15L,68I,71D,83L,96V,116A,120S,124V,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S
MT583073	HBN088	China	25-Nov-2019	genomic RNA	subtype: CRF_01	1	231	6A,14S,15L,31G,33N,54M,58I,83L,92P,120S,128D,148V,178T,200S,207T,208G,225S
MT583074	HBN091	China	06-Dec-2019	genomic RNA	subtype: CRF_55	1	231	6A,14P,15V,31G,33N,54M,58I,79D,83T,87Q,88V,92P,96I,98D,116A,128D,148V,178T,200S,207T,208G
MT583075	HBN092	China	10-Dec-2019	genomic RNA	subtype: CRF_07	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,207T,208G,225S
MT583076	HBN093	China	13-Dec-2019	genomic RNA	subtype: 0107	1	231	14P,68I,71D,83L,116A,120S,124V,128D,154K,169F,171C,178T,180D,187D,203R,208G,210S,211I,225S

Genbank References: capsid (p24)

Database

Resources

Team