Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Billings (2015)	The Number and Complexity of Pure and Recombinant HIV-1 Strains Observed within Incident Infections during the HIV and Malaria Cohort Study Conducted in Kericho, Kenya, from 2003 to 2006	PLoS ONE 10 (8), E0135124 (2015)	1.14e-152	58	58	Naive	Plasma	Direct PCR	Molecular epidemiology

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Accession	IsolateName	Country	Coll Date	MolType	Source	Note	FirstAA	LastAA	MutList
KT022385	03KE543869V2	Kenya	2003	genomic RNA	plasma	subtype: A1D	1	231	6L,14P,15L,27I,83L,87Q,91P,96L,110N,116A,120H,148V,180D,230I
KT022360	04KE169579V3	Kenya	2004	genomic RNA	plasma	subtype: A1	1	231	6A,11T,13L,15V,27I,30R,31G,58I,71D,83L,87Q,92P,111A,120S,148V,154K,169F,178T,183G,200S,203R,207T,208G
KT022361	04KE263806V2	Kenya	2004	genomic RNA	plasma	subtype: A1	1	231	6A,11I,15L,27I,30R,31G,54M,58I,71D,83L,92P,111T,128D,148V,154K,169F,183G,187D,200A,203R,208G
KT022362	04KE344827V3	Kenya	2004	genomic RNA	plasma	subtype: C	1	231	6L,14T,15L,27I,41T,71D,83L,89E,91V,116A,120S,128D,136M,148V,154K,169F,171I,180D,187D,207S,208G,210S,225S
KT022363	04KE354207V3	Kenya	2004	genomic RNA	plasma	subtype: A1	1	231	6A,11I,15L,26A,27I,30R,31G,54M,58I,71D,79D,83L,92P,111P,120G,148V,154K,169F,178T,180D,200S,203R,207S,208G,225A,230I
KT022364	04KE378531V2	Kenya	2004	genomic RNA	plasma	subtype: A1	1	231	6A,14S,15V,26A,27I,47C,54M,58I,71D,83L,91V,111V,115M,116A,120G,128D,148V,154K,169F,178T,183G,200S,203R,207A,208G
KT022386	04KE389016V3	Kenya	2004	genomic RNA	plasma	subtype: A1A2CD	1	231	6A,41T,71D,83M,91A,120G,148V,154K,169F,178T,187D,200S,203R,204G,208G,225S
KT022365	04KE406723V2	Kenya	2004	genomic RNA	plasma	subtype: A1	1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,204G,207T,208G
KT022387	04KE414659V2	Kenya	2004	genomic RNA	plasma	subtype: A1D	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120G,128D,148V,154K,169F,171A,178T,180D,190M,200S,203R,204G,207A,208G,225S
KT022388	04KE489686V2	Kenya	2004	genomic RNA	plasma	subtype: A1D	1	231	6A,11T,14S,15L,27I,41T,58V,83L,86P,96I,120S,148V,183G,208G,225S,230I
KT022389	04KE556528V2	Kenya	2004	genomic RNA	plasma	subtype: A1D	1	231	6L,15L,16T,27I,83L,91V,110N,116A,120S,148V,180D,207Q,208G
KT022366	04KE585573V2	Kenya	2004	genomic RNA	plasma	subtype: C	1	231	6L,27I,41T,71D,83L,91V,96L,116A,124V,128D,148V,154K,168L,169F,177S,178T,187D,203R,208G,210S,225S,230I
KT022390	04KE629642V3	Kenya	2004	genomic RNA	plasma	subtype: A1D	1	231	6A,11T,12Y,14S,15L,27I,54M,58V,71D,83L,92P,111T,115L,120G,121T,128D,148V,154K,169F,178T,183G,200S,207V,208G
KT022367	04KE649309V2	Kenya	2004	genomic RNA	plasma	subtype: A1	1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
KT022391	04KE663257V3	Kenya	2004	genomic RNA	plasma	subtype: A1CD	1	231	6A,15V,27I,31G,58I,71D,83L,92P,111P,128D,148V,169F,178T,200S,203R,207S,208G
KT022392	04KE719832V2	Kenya	2004	genomic RNA	plasma	subtype: A1D	1	231	6L,14S,15L,41T,50S,59I,71D,83Q,91Q,116A,146G,148V,149G,154K,180D,225S
KT022393	04KE780221V3	Kenya	2004	genomic RNA	plasma	subtype: A1C	1	231	6L,14P,15L,27I,41T,50T,71D,83L,87Q,91V,94N,96I,116T,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
KT022368	04KE809842V2	Kenya	2004	genomic RNA	plasma	subtype: A1	1	231	2V,6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,121T,128D,148V,154K,169F,171C,178T,183G,200S,203R,207T,208G
KT022394	04KE830543V3	Kenya	2004	genomic RNA	plasma	subtype: A1D	1	231	6A,11I,14P,15L,27I,30R,31G,54M,58I,71D,83L,86I,87Q,92P,96L,111P,128D,148V,154K,169F,183G,203R,204G,207T,208G,210S,225S,230I
KT022369	04KE860822V3	Kenya	2004	genomic RNA	plasma	subtype: A1	1	231	2V,6A,11I,27I,30R,31G,50A,52I,54M,58I,71D,83L,92P,111T,128D,132K,148V,154K,169F,178T,183G,200S,203R,207S,208G,230I
KT022395	04KE870929V2	Kenya	2004	genomic RNA	plasma	subtype: A1CD	1	231	6A,14S,27I,41T,54S,58I,71D,83L,110N,116A,120NS,148V,169F,171V,178T,180D,203R,225S
KT022396	04KE880505V2	Kenya	2004	genomic RNA	plasma	subtype: A1D	1	231	6L,27I,83L,110N,116A,120S,148V,180D,225S
KT022397	04KE888800V3	Kenya	2004	genomic RNA	plasma	subtype: A1D	1	231	6A,11M,15L,27I,30R,31G,54M,58I,71D,83L,87Q,92P,111T,120S,128D,148V,154K,169F,178T,183G,200A,203R,207T,208G,225S
KT022398	04KE956490V3	Kenya	2004	genomic RNA	plasma	subtype: A1CD	1	231	6L,15L,27I,33N,96I,116T,120S,148V,180D,208G,225S
KT022399	05KE176519V4	Kenya	2005	genomic RNA	plasma	subtype: A1D	1	231	6A,11I,15V,27I,41T,54M,58I,71D,83L,87Q,92P,96I,111I,115V,116A,120S,128D,148V,154K,169F,178T,183G,200S,203R,207T,208G,225S
KT022370	05KE185405V4	Kenya	2005	genomic RNA	plasma	subtype: A1	1	231	6A,11I,12Y,14S,15L,27I,31G,33N,54M,58I,71D,83L,92P,111T,115L,120S,128D,148V,154K,169F,171V,178T,183G,200S,203R,207T,208G
KT022400	05KE215154V4	Kenya	2005	genomic RNA	plasma	subtype: A1D	1	231	6L,15L,27I,83L,87Q,96I,110N,116A,148V,183G,208G,225S,230I
KT022401	05KE295198V5	Kenya	2005	genomic RNA	plasma	subtype: A1CD	1	231	6A,11I,14S,15F,27I,30R,31G,54M,58I,66I,71D,83L,87Q,91V,92P,96I,111P,115M,116A,120S,124V,128D,148V,154K,169F,178T,183G,200S,203R,207Q,208G,210S
KT022371	05KE369195V4	Kenya	2005	genomic RNA	plasma	subtype: C	1	231	6L,14P,27I,36T,41T,71D,83L,87Q,91V,96I,116T,120S,128D,148V,154K,169F,178T,180D,187D,191I,203R,208G,225S
KT022372	05KE376579V4	Kenya	2005	genomic RNA	plasma	subtype: A1	1	231	6A,11I,15V,27I,54M,58I,71D,83L,92P,111P,120G,128D,148V,154K,169F,178T,200S,203R,207A,208G,210S
KT022402	05KE398838V4	Kenya	2005	genomic RNA	plasma	subtype: A1A2D	1	231	6A,71D,83I,92P,107S,120S,148V,169F,171A,178T,180D,200S,207S,208G,215I,225S
KT022403	05KE493170V5	Kenya	2005	genomic RNA	plasma	subtype: CRF16_A2D	1	231	6A,14P,18K,41T,71D,83L,92P,120S,148V,154K,169F,178T,180D,187D,200S,203R,208G,210S,225S
KT022373	05KE520997V4	Kenya	2005	genomic RNA	plasma	subtype: A1	1	231	6A,11I,14N,15L,27I,54M,58I,68I,71D,83L,92P,111P,115L,116Q,120G,128D,148V,154K,169F,178T,183G,200S,207T,208G
KT022404	05KE530245V4	Kenya	2005	genomic RNA	plasma	subtype: A1D	1	231	6A,14N,15L,27I,44A,50S,54M,58I,71D,87Q,92P,96I,111P,120S,148V,154K,169F,187Q,200A,203R,207T,208G
KT022374	05KE607907V4	Kenya	2005	genomic RNA	plasma	subtype: A1	1	231	2V,6A,11I,14S,15L,27I,48A,54M,58V,71D,83L,92P,111I,120G,131R,148V,154K,169F,178T,183G,200S,203R,207A,208G,225S,230I
KT022405	05KE613437V4	Kenya	2005	genomic RNA	plasma	subtype: A1D	1	231	6L,27I,87Q,96I,98D,116T,120G,148V,178T,183S,208G,225S
KT022375	05KE643439V4	Kenya	2005	genomic RNA	plasma	subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,86I,111P,116A,120G,128D,148V,169F,178T,180D,203R,208G
KT022406	05KE725124V4	Kenya	2005	genomic RNA	plasma	subtype: CRF16_A2D	1	231	6A,14P,15L,41T,71D,83I,87Q,92P,96L,110N,120S,148V,169F,178T,180D,187D,200A,203R,208G
KT022407	05KE726081V5	Kenya	2005	genomic RNA	plasma	subtype: A1A2D	1	231	6A,71D,92P,120S,148V,169F,178T,187D,200N,203R,208G
KT022408	05KE757760V5	Kenya	2005	genomic RNA	plasma	subtype: A1C	1	231	6A,11T,12Y,14S,15M,26A,27I,41T,48A,54M,58I,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,183G,200S,203R,208G
KT022376	05KE851891V4	Kenya	2005	genomic RNA	plasma	subtype: A1	1	231	6A,9H,14S,15L,27I,31G,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,171C,178T,183G,200S,203R,207T,208G
KT022377	05KE884468V5	Kenya	2005	genomic RNA	plasma	subtype: A1	1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,167K,169F,178T,191I,200S,203R,204S,208G
KT022409	05KE897156V5	Kenya	2005	genomic RNA	plasma	subtype: A1D	1	231	6L,27I,83L,148V,173K,178T,225S
KT022410	05KE961896V5	Kenya	2005	genomic RNA	plasma	subtype: A1A2D	1	231	6M,14P,15L,27I,29D,41T,83I,91V,96L,110N,120S,148V,180D,225S
KT022411	05KE963379V4	Kenya	2005	genomic RNA	plasma	subtype: A1A2D	1	231	6A,10W,15L,33N,71D,83L,116A,120S,148V,178T,187D,191I,200S,207V,208G
KT022412	06KE149896V6	Kenya	2006	genomic RNA	plasma	subtype: A1D	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120G,128D,148V,154K,169F,171A,178T,180D,199R,200S,207S,208G
KT022413	06KE161801V6	Kenya	2006	genomic RNA	plasma	subtype: A1C	1	231	6L,14P,16G,17A,27I,41T,71D,83L,96I,116T,128D,148V,154K,169F,178T,187D,188S,203R,208G,210S,225S
KT022378	06KE196199V6	Kenya	2006	genomic RNA	plasma	subtype: A1	1	231	6A,11T,14S,15L,27I,29D,48I,54M,58I,71D,83L,86A,87Q,96L,111P,116A,120G,128D,148V,154K,169F,178T,183G,200S,207A,208G,225S
KT022379	06KE275457V6	Kenya	2006	genomic RNA	plasma	subtype: G	1	231	6A,41T,71D,83T,86Q,87Q,91L,92P,93V,96L,116A,120R,135V,136M,148V,166N,169F,178T,180D,187D,203R,208G,225S
KT022380	06KE335214V6	Kenya	2006	genomic RNA	plasma	subtype: A1	1	231	6A,11I,15V,27I,54M,58I,71D,83L,92P,111I,120S,128D,148V,154K,169F,178T,187D,200S,203R,208G,225S
KT022381	06KE404877V7	Kenya	2006	genomic RNA	plasma	subtype: A1	1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,183G,200S,203R,207T,208G,210S
KT022382	06KE452693V6	Kenya	2006	genomic RNA	plasma	subtype: A1	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,171C,178T,183G,191I,200S,203R,207S,208G,210S
KT022414	06KE484390V7	Kenya	2006	genomic RNA	plasma	subtype: A1A2CD	1	231	6A,10W,14P,15L,33N,83L,91V,110N,116A,148V,187D,204G,207Q,208G,225S,230I
KT022383	06KE661996V6	Kenya	2006	genomic RNA	plasma	subtype: A1	1	231	6A,11I,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,116A,120G,124V,128D,148V,154K,168L,169F,178T,180D,200S,203R,207T,208G
KT022415	06KE688699V6	Kenya	2006	genomic RNA	plasma	subtype: A1CD	1	231	6L,27I,41T,71D,83T,87Q,91V,98D,116A,120S,128D,148V,154K,169F,171V,178T,180D,187D,210S,225S
KT022384	06KE795643V7	Kenya	2006	genomic RNA	plasma	subtype: A1	1	231	6A,9H,15L,27I,31G,48I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,171C,178T,183G,200S,203R,207T,208G
KT022416	06KE809646V6	Kenya	2006	genomic RNA	plasma	subtype: A1D	1	231	6L,15L,33N,83T,91V,116A,120S,148V,154K,183G,208G
KT022417	06KE894822V7	Kenya	2006	genomic RNA	plasma	subtype: A1D	1	231	6A,10W,33N,83L,116A,120S,148V,178T,187D,201V,203R,208G,225S

Genbank References: capsid (p24)

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