Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Tovanabutra (2020)	Direct Submission	Submitted (07-DEC-2018) Laboratory of Molecular Vi	3.86e-149	262	18	Naive	Plasma; CSF	NGS	Acute infection

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Accession	IsolateName	Country	Coll Date	MolType	Note	FirstAA	LastAA	MutList
MK272696	2543625C001L_Sa	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,78V,79D,83A,92P,120S,148V,178T,200S,207T,208G,225S
MK272697	2543625C001L_Sb	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,78V,79D,83A,92P,120S,148V,178T,200S,207T,208G,225S
MK272698	2543625C001L_Se	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,78V,79D,83A,92P,120S,148V,178T,200S,207T,208G,225S
MK272699	2543625C001L_Sg	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,78V,79D,83A,92P,120S,148V,178T,200S,207T,208G,225S
MK272700	2543625C001L_Sh	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,78V,79D,83A,92P,120S,148V,178T,200S,207T,208G,225S
MK272701	2543625C001L_Si	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,78V,79D,83A,92P,120S,148V,178T,200S,207T,208G,225S
MK272702	2543625C001L_Sj	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,78V,79D,83A,92P,120S,148V,178T,200S,207T,208G,225S
MK272703	2543625C001L_Sk	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,78V,79D,83A,92P,120S,148V,178T,200S,207T,208G,225S
MK272704	2543625C001L_Sl	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,78V,79D,83A,92P,120S,148V,178T,200S,207T,208G,225S
MK272705	2543625C001L_Sm	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,27I,31G,33N,54M,58I,78V,79D,83A,92P,120S,148V,178T,200S,207T,208G,225S
MK272339	2543625P000FL_Sa	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,78V,79D,83A,92P,120S,148V,178T,200S,207T,208G,225S
MK272340	2543625P000FL_Sb	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,78V,79D,83A,92P,120S,144K,148V,178T,200S,207T,208G,225S
MK272341	2543625P000FL_Sd	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,78V,79D,83A,92P,120S,148V,178T,200S,207T,208G,225S
MK272342	2543625P000FL_Sg	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,78V,79D,83A,92P,120S,148V,178T,200S,207T,208G,225S
MK272343	2543625P000FL_Si	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,78V,79D,83A,92P,120S,148V,178T,200S,207T,208G,225S
MK272344	2543625P000FL_Sk	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,78V,79D,83A,92P,120S,148V,178T,200S,207T,208G,225S
MK272345	2543625P000FL_Sl	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,78V,79D,83A,92P,120S,148V,178T,200S,207T,208G,219R,225S
MK272346	2543625P000FL_Sm	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,78V,79D,83A,92P,120S,148V,178T,200S,207T,208G,225S
MK272347	2543625P000FL_Sn	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,78V,79D,83A,92P,120S,148V,178T,200S,207T,208G,225S
MK272706	2543733C001L_Sa	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,178T,200S,207S,208G,225S
MK272707	2543733C001L_Sb	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,178T,200S,207S,208G,225S
MK272708	2543733C001L_Sc	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,178T,200S,207S,208G,225S
MK272709	2543733C001L_Sd	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,178T,200S,207S,208G,225S
MK272710	2543733C001L_Se	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,178T,200S,207S,208G,225S
MK272711	2543733C001L_Sf	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,178T,200S,207S,208G,225S
MK272712	2543733C001L_Sg	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,178T,200S,207S,208G,225S
MK272713	2543733C001L_Sh	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,103N,128D,148V,149G,178T,200S,207S,208G,225S
MK272714	2543733C001L_Si	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,178T,200S,207S,208G,225S
MK272715	2543733C001L_Sj	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,178T,200S,207S,208G,225S
MK272348	2543733P000FL_Sa	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,178T,200S,207S,208G,225S
MK272349	2543733P000FL_Sc	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,178T,200S,207S,208G,225S
MK272350	2543733P000FL_Sd	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,178T,200S,207S,208G,225S
MK272351	2543733P000FL_Se	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,178T,200S,207S,208G,225S
MK272352	2543733P000FL_Sf	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,178T,200S,207S,208G,225S
MK272353	2543733P000FL_Sg	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,178T,200S,207S,208G,225S
MK272354	2543733P000FL_Sh	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,178T,200S,207S,208G,225S
MK272355	2543733P000FL_Si	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,178T,200S,207S,208G,225S
MK272356	2543733P000FL_Sj	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,178T,200S,207S,208G,225S
MK272441	2543832C001L_Sb	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G,225S
MK272442	2543832C001L_Sc	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G,225S
MK272443	2543832C001L_Sd	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G,225S
MK272444	2543832C001L_Se	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G,225S
MK272445	2543832C001L_Sf	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G,225S
MK272446	2543832C001L_Sg	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G,225S
MK272447	2543832C001L_Sh	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G,225S
MK272448	2543832C001L_Si	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G,225S
MK272449	2543832C001L_Sj	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G,225S
MK272450	2543832C001L_Sk	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G,225S
MK272357	2543832P000FL_Sa	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G,225S
MK272358	2543832P000FL_Sb	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G,225S
MK272359	2543832P000FL_Sc	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G,225S
MK272360	2543832P000FL_Sd	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G,225S
MK272361	2543832P000FL_Se	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G,225S
MK272362	2543832P000FL_Sf	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G,225S
MK272363	2543832P000FL_Sg	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G,225S
MK272364	2543832P000FL_Sh	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54I,58I,92P,120S,123S,128D,142I,148V,178T,200S,207T,208G,225S
MK272365	2543832P000FL_Sj	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G,225S
MK272366	2543832P000FL_Sk	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,92P,120S,123S,128D,148V,178T,200S,207T,208G,225S
MK272367	2544636P000FL_Sa	Thailand	2015	genomic RNA	subtype: 01B	1	231	6A,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272368	2544636P000FL_Sb	Thailand	2015	genomic RNA	subtype: 01B	1	231	6A,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272369	2544636P000FL_Sf	Thailand	2015	genomic RNA	subtype: 01B	1	231	6A,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272370	2544636P000FL_Si	Thailand	2015	genomic RNA	subtype: 01B	1	231	6A,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272371	2544636P000FL_Sj	Thailand	2015	genomic RNA	subtype: 01B	1	231	6A,14P,15L,31G,33N,54M,58I,74X,75~,76~,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272372	2544636P000FL_Sk	Thailand	2015	genomic RNA	subtype: 01B	1	231	6A,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272373	2544636P000FL_Sl	Thailand	2015	genomic RNA	subtype: 01B	1	231	6A,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272374	2545383P000FL_Sd	Thailand	2014	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,87Q,92P,96I,110N,116A,128D,148V,170I,187D,200S,207T,208G,225S
MK272375	2545383P000FL_Sg	Thailand	2014	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,87Q,92P,96I,110N,116A,128D,148V,187D,195DN,200S,207T,208G,225S
MK272376	2545383P000FL_Sh	Thailand	2014	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,87Q,92P,96I,110N,116A,128D,148V,187D,200S,207T,208G,225S
MK272377	2545383P000FL_Si	Thailand	2014	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,87Q,92P,96I,110N,116A,128D,148V,187D,200S,207T,208G,225S
MK272378	2545383P000FL_Sj	Thailand	2014	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,87Q,92P,96I,110N,116A,128D,148V,187D,200S,207T,208G,225S
MK272379	2545383P000FL_Sk	Thailand	2014	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,87Q,92P,96I,110N,116A,128D,148V,187D,200S,207T,208G,225S
MK272380	2545383P000FL_Sl	Thailand	2014	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,87Q,92P,96I,110N,116A,128D,148V,187D,200S,207T,208G,225S
MK272381	2545383P000FL_Sm	Thailand	2014	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,87Q,92P,96I,110N,116A,128D,148V,187D,200S,207T,208G,225S
MK272382	2545383P000FL_So	Thailand	2014	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,87Q,92P,96I,110N,116A,128D,148V,152DN,187D,200S,207T,208G,225S
MK272451	2545436C001L_Sa	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272452	2545436C001L_Sb	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,209AV,225S
MK272453	2545436C001L_Sc	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272454	2545436C001L_Se	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272455	2545436C001L_Sf	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272456	2545436C001L_Sg	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272457	2545436C001L_Sh	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272458	2545436C001L_Si	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272459	2545436C001L_Sj	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272460	2545436C001L_Sk	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272383	2545436P000FL_Sb	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272384	2545436P000FL_Sd	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272385	2545436P000FL_Se	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272386	2545436P000FL_Sf	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272387	2545436P000FL_Sg	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272388	2545436P000FL_Si	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272389	2545436P000FL_Sj	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272390	2545436P000FL_Sk	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272391	2545436P000FL_Sl	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6T,14P,15L,31G,33N,54M,58I,83L,92P,120G,123A,128D,148V,178T,200S,207T,208G,225S
MK272461	2545573C001L_Sb	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,41T,54M,58I,87Q,92P,107S,116A,120G,123A,128D,178T,200S,207T,208G,225S
MK272462	2545573C001L_Sc	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,41T,54M,58I,87Q,92P,107S,116A,120G,123A,128D,178T,200S,207T,208G,225S
MK272463	2545573C001L_Sd	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,21NS,31G,33N,41T,54M,58I,87Q,92P,107S,116A,120G,123A,128D,178T,200S,207T,208G,225S
MK272464	2545573C001L_Se	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,41T,54M,58I,87Q,92P,107S,116A,120G,123A,128D,178T,200S,207T,208G,225S
MK272465	2545573C001L_Sf	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,41T,54M,58I,87Q,92P,107S,116A,120G,123A,128D,178T,200S,207T,208G,225S
MK272466	2545573C001L_Sg	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,41T,54M,58I,87Q,92P,107S,116A,120G,123A,128D,178T,200S,207T,208G,225S
MK272467	2545573C001L_Si	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,41T,54M,58I,87Q,92P,107S,116A,120G,123A,128D,178T,200S,207T,208G,225S
MK272468	2545573C001L_Sj	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,41T,54M,58I,87Q,92P,107S,116A,120G,123A,128D,178T,200S,207T,208G,225S
MK272469	2545573C001L_Sk	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,41T,54M,58I,87Q,92P,107S,116A,120G,123A,128D,178T,200S,207T,208G,225S
MK272470	2545573C001L_Sl	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,41T,54M,56X,58I,87Q,92P,107S,116A,120G,123A,128D,178T,200S,207T,208G,225S
MK272471	2545573P000L_Sa	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,41T,54M,58I,87Q,92P,107S,116A,120G,123A,128D,178T,200S,207T,208G,225S
MK272472	2545573P000L_Sc	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,41T,54M,58I,87Q,92P,107S,116A,120G,123A,128D,178T,200S,207T,208G,225S
MK272473	2545573P000L_Sd	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,41T,54M,58I,87Q,92P,107S,116A,120G,123A,128D,178T,200S,207T,208G,225S
MK272474	2545573P000L_Sg	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,41T,54M,58I,87Q,92P,107S,116A,120G,123A,128D,178T,200S,207T,208G,225S
MK272475	2545573P000L_Sh	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,41T,54M,58I,87Q,92P,107S,116A,120G,123A,128D,178T,200S,207T,208G,225S
MK272476	2545573P000L_Si	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,41T,54M,58I,87Q,92P,107S,116A,120G,123A,128D,178T,200S,207T,208G,225S
MK272477	2545573P000L_Sj	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,41T,54M,58I,87Q,92P,107S,116A,120G,123A,128D,178T,200S,207T,208G,225S
MK272478	2545573P000L_Sk	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,41T,54M,58I,87Q,92P,107S,116A,120G,123A,128D,178T,200S,207T,208G,225S
MK272479	2545573P000L_Sm	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,41T,54M,58I,86I,87Q,92P,107S,116A,120G,123A,128D,178T,200S,207T,208G,225S
MK272480	2546083C001L_Sa	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14S,15L,31G,33N,54M,58I,128D,148V,178T,200S,207T,208G,225S
MK272481	2546083C001L_Sb	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14S,15L,31G,33N,54M,58I,128D,148V,178T,200S,207T,208G,225S
MK272482	2546083C001L_Sc	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14S,15L,31G,33N,54M,58I,128D,148V,178T,200S,207T,208G,225S
MK272483	2546083C001L_Sd	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14S,15L,31G,33N,54M,58I,128D,148V,178T,200S,207T,208G,225S
MK272484	2546083C001L_Se	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	2M,6A,11I,14S,15L,31G,33N,54M,58I,128D,148V,178T,200S,207T,208G,225S
MK272485	2546083C001L_Sf	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14S,15L,31G,33N,54M,58I,128D,148V,178T,200S,207T,208G,225S
MK272486	2546083C001L_Si	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14S,15L,31G,33N,54M,58I,128D,148V,178T,200S,207T,208G,225S
MK272487	2546083C001L_Sl	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14S,15L,31G,33N,54M,58I,128D,148V,178T,200S,207T,208G,225S
MK272488	2546083C001L_Sn	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14S,15L,31G,33N,46EG,54M,58I,128D,148V,178T,200S,207T,208G,225S
MK272489	2546083C001L_So	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14S,15L,31G,33N,54M,58I,128D,148V,178T,200S,207T,208G,225S
MK272490	2546083P000L_Sc	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14S,15L,31G,33N,54M,58I,128D,148V,178T,200S,207T,208G,225S
MK272491	2546083P000L_Se	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14S,15L,31G,33N,54M,58I,128D,148V,178T,200S,207T,208G,225S
MK272492	2546083P000L_Sf	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14S,15L,31G,33N,54M,58I,128D,148V,178T,200S,207T,208G,225S
MK272493	2546083P000L_Sg	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14S,15L,31G,33N,54M,58I,128D,148V,178T,200S,207T,208G,225S
MK272494	2546083P000L_Sh	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14S,15L,31G,33N,54M,58I,128D,148V,178T,200S,207T,208G,225S
MK272495	2546083P000L_Si	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14S,15L,31G,33N,54M,58I,128D,148V,178T,200S,207T,208G,225S
MK272496	2546083P000L_Sj	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14S,15L,31G,33N,54M,58I,128D,148V,178T,200S,207T,208G,225S
MK272497	2546083P000L_Sk	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14S,15L,31G,33N,54M,58I,128D,148V,178T,200S,207T,208G,225S
MK272498	2546083P000L_Sl	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14S,15L,31G,33N,54M,58I,128D,148V,178T,200S,207T,208G,225S
MK272499	2546083P000L_Sm	Thailand	2009	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,14S,15L,31G,33N,54M,58I,128D,148V,178T,200S,206R,207T,208G,225S
MK272500	2546340C001L_Sa	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83I,116A,128D,148V,178T,204S,207T,208G,225S
MK272501	2546340C001L_Sb	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83I,116A,128D,148V,178T,204S,207T,208G,225S
MK272502	2546340C001L_Sc	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83I,116A,128D,148V,178T,204S,207T,208G,225S
MK272503	2546340C001L_Sd	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83I,116A,128D,148V,178T,204S,207T,208G,225S
MK272504	2546340C001L_Se	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83I,116A,128D,148V,178T,204S,207T,208G,225S
MK272505	2546340C001L_Sf	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83I,116A,128D,148V,178T,204S,207T,208G,225S
MK272506	2546340C001L_Sg	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83I,116A,128D,148V,167K,178T,204S,207T,208G,225S
MK272507	2546340C001L_Sh	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83I,116A,128D,130CY,148V,178T,204S,207T,208G,225S
MK272508	2546340C001L_Si	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83I,116A,128D,148V,178T,204S,207T,208G,225S
MK272509	2546340C001L_Sj	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83I,116A,128D,148V,178T,204S,207T,208G,225S
MK272672	2546340P000FL_Sa	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83I,102R,116A,128D,148V,178T,204S,207T,208G,225S
MK272673	2546340P000FL_Sb	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83I,116A,128D,148V,178T,204S,207T,208G,225S
MK272674	2546340P000FL_Sc	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83I,116A,128D,148V,178T,204S,207T,208G,225S
MK272675	2546340P000FL_Sd	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83I,116A,128D,148V,178T,204S,207T,208G,225S
MK272676	2546340P000FL_Sf	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83I,116A,128D,148V,178T,204S,207T,208G,225S
MK272677	2546340P000FL_Sh	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,7R,14P,31G,33N,54M,58I,83I,116A,128D,148V,178T,204S,207T,208G,225S
MK272678	2546340P000FL_Sj	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83I,116A,128D,148V,178T,204S,207T,208G,225S
MK272679	2546340P000FL_Sl	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83I,116A,128D,148V,178T,204S,207T,208G,225S
MK272392	2546340P000FL_Sm	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,29K,31G,33N,54M,58I,83I,116A,128D,148V,178T,204S,207T,208G,225S
MK272510	2546609C001L_Sa	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,54M,58I,83L,87Q,92P,110N,120G,123S,128D,146Q,148V,149G,154K,178T,200S,207S,208G,225S
MK272511	2546609C001L_Sb	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,54M,58I,83L,87Q,92P,110N,120G,123S,128D,146Q,148V,149G,154K,178T,200S,207S,208G,225S
MK272512	2546609C001L_Sc	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,54M,58I,83L,87Q,92P,110N,120G,123S,128D,146Q,148V,149G,154K,178T,200S,207S,208G,225S
MK272513	2546609C001L_Sd	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,54M,58I,68LM,83L,87Q,92P,110N,120G,123S,128D,146Q,148V,149G,154K,178T,200S,207S,208G,225S
MK272514	2546609C001L_Se	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,54M,58I,83L,87Q,92P,110N,120G,123S,128D,146Q,148V,149G,154K,178T,200S,207S,208G,225S
MK272515	2546609C001L_Sf	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,54M,58I,83L,87Q,92P,110N,120G,123S,128D,146Q,148V,149G,154K,178T,200S,207S,208G,225S
MK272516	2546609C001L_Sg	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,54M,58I,83L,87Q,92P,110N,120G,123S,128D,146Q,148V,149G,154K,178T,200S,207S,208G,225S
MK272517	2546609C001L_Sh	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,54M,58I,83L,87Q,92P,110N,120G,123S,128D,146Q,148V,149G,154K,178T,200S,207S,208G,225S
MK272518	2546609C001L_Sj	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,54M,58I,83L,87Q,92P,110N,120G,123S,128D,143K,146Q,148V,149G,154K,178T,200S,207S,208G,225S
MK272519	2546609C001L_Sl	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,54M,58I,83L,87Q,92P,110N,120G,123S,128D,146Q,148V,149G,154K,178T,200S,207S,208G,225S
MK272680	2546609P000FL_Sb	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,54M,58I,83L,87Q,92P,110N,120G,123S,128D,146Q,148V,149G,154K,178T,200S,207S,208G,225S
MK272681	2546609P000FL_Sc	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,54M,58I,83L,87Q,92P,110N,120G,123S,128D,146Q,148V,149G,154K,178T,200S,207S,208G,225S
MK272682	2546609P000FL_Sd	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,54M,58I,83L,87Q,92P,110N,120G,123S,128D,146Q,148V,149G,154K,178T,200S,207S,208G,225S
MK272683	2546609P000FL_Se	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,54M,58I,83L,87Q,92P,98EG,110N,120G,123S,128D,146Q,148V,149G,154K,178T,200S,207S,208G,225S
MK272393	2546609P000FL_Sf	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,54M,58I,83L,87Q,92P,110N,120G,123S,128D,146Q,148V,149G,154K,178T,200S,207S,208G,225S
MK272684	2546609P000FL_Sg	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,54M,58I,83L,87Q,92P,110N,120G,123S,128D,146Q,148V,149G,154K,178T,200S,207S,208G,225S
MK272685	2546609P000FL_Sh	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,54M,58I,79DE,83L,87Q,92P,95QR,110N,120G,123S,128D,146Q,148V,149G,154K,178T,200S,207S,208G,225S
MK272394	2546609P000FL_Si	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,54M,58I,83L,87Q,92P,110N,120G,123S,128D,146Q,148V,149G,154K,178T,200S,207S,208G,225S
MK272686	2546609P000FL_Sk	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,15V,31G,33N,45G,54M,58I,83L,87Q,92P,110N,120G,123S,128D,146Q,148V,149G,154K,178T,200S,207S,208G,225S
MK272395	2547268P000FL_Sb	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,83L,92P,120S,123V,128D,148V,178T,200S,207T,208G,225S
MK272396	2547268P000FL_Sc	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,83L,92P,120S,123V,128D,148V,178T,200S,207T,208G,225S
MK272397	2547268P000FL_Sd	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,83L,92P,120S,123V,128D,148V,178T,200S,207T,208G,225S
MK272398	2547268P000FL_Se	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,83L,92P,120S,123V,128D,148V,178T,200S,207T,208G,225S
MK272399	2547268P000FL_Sf	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,83L,92P,120S,123V,128D,148V,178T,200S,207T,208G,225S
MK272400	2547268P000FL_Si	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,83L,92P,120S,123V,128D,148V,157LP,178T,200S,207T,208G,225S
MK272401	2547268P000FL_Sj	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54I,58I,83L,92P,120S,123V,128D,148V,178T,200S,207T,208G,225S
MK272402	2547268P000FL_Sl	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,83L,92P,108AT,120S,123V,128D,148V,178T,200S,207T,208G,225S
MK272403	2547268P000FL_Sm	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,83L,92P,120S,123V,128D,148V,178T,200S,207T,208G,225S
MK272404	2547279P000FL_Sb	Thailand	2014	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,81DG,92P,120S,128D,148V,178T,200S,203R,207A,208G,225S
MK272405	2547279P000FL_Sd	Thailand	2014	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,203R,207A,208G,225S
MK272406	2547279P000FL_Se	Thailand	2014	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,203R,207A,208G,225S
MK272407	2547279P000FL_Sf	Thailand	2014	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,203R,207A,208G,225S
MK272408	2547279P000FL_Sh	Thailand	2014	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,203R,207A,208G,225S
MK272409	2547279P000FL_Si	Thailand	2014	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,203R,207A,208G,225S
MK272410	2547279P000FL_Sj	Thailand	2014	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,203R,207A,208G,225S
MK272411	2547279P000FL_Sl	Thailand	2014	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,203R,207A,208G,225S
MK272412	2547279P000FL_Sm	Thailand	2014	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,203R,207A,208G,225S
MK272413	2547279P000FL_Sn	Thailand	2014	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,203R,207A,208G,225S
MK272414	2548105P000FL_Sb	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,15L,27I,31G,33N,37L,58I,83M,92P,111I,120G,128D,148V,178T,199R,200S,203R,207A,208G,225S
MK272415	2548105P000FL_Sd	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,15L,27I,31G,33N,37L,58I,83M,92P,111I,120G,128D,148V,178T,200S,203R,207A,208G,225S
MK272416	2548105P000FL_Se	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,15L,27I,31G,33N,37L,58I,83M,92P,111I,120G,128D,148V,178T,199R,200S,203R,207A,208G,225S
MK272417	2548105P000FL_Si	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,15L,27I,31G,33N,37L,58I,83M,92P,111I,120G,128D,148V,178T,200S,203R,207A,208G,225S
MK272418	2548105P000FL_Sl	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,15L,27I,31G,33N,37L,58I,83M,92P,111I,120G,128D,148V,178T,193NS,199R,200S,203R,207A,208G,225S
MK272419	2548105P000FL_Sm	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,15L,27I,31G,33N,37L,58I,83M,92P,111I,120G,128D,148V,178T,199R,200S,203R,207T,208G,225S
MK272420	2548105P000FL_Sr	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,15L,27I,31G,33N,37L,58I,83M,92P,111I,120G,128D,148V,178T,199R,200S,203R,207A,208G,225S
MK272421	2548105P000FL_St	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,15L,27I,31G,33N,37L,58I,73IV,83M,92P,111I,118MV,120G,128D,148V,178T,199R,200S,203R,207A,208G,225S
MK272422	2548105P000FL_Su	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,11I,15L,27I,31G,33N,37L,58I,83M,92P,111I,120G,128D,148V,178T,199R,200S,203R,207A,208G,225S
MK272520	2548123P000L_Sa	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,87Q,92P,96L,128D,148V,178T,200S,207T,208G,225S
MK272521	2548123P000L_Sc	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,87Q,92P,96L,128D,148V,178T,200S,207T,208G,225S
MK272522	2548123P000L_Se	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,87Q,92P,96L,128D,148V,178T,200S,207T,208G,225S
MK272523	2548123P000L_Sf	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,87Q,92P,96L,128D,148V,178T,200S,207T,208G,225S
MK272524	2548123P000L_Sg	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,87Q,92P,96L,128D,148V,178T,200S,207T,208G,225S
MK272525	2548123P000L_Sh	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,87Q,92P,96L,128D,148V,178T,200S,207T,208G,225S
MK272526	2548123P000L_Si	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,87Q,92P,96L,128D,148V,178T,200S,207T,208G,225S
MK272527	2548123P000L_Sj	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,87Q,92P,96L,128D,148V,178T,200S,207T,208G,225S
MK272528	2548123P000L_Sk	Thailand	2011	genomic RNA	subtype: CRF01_AE	1	231	6A,14S,15L,31G,33N,54M,58I,87Q,92P,96L,128D,148V,178T,200S,207T,208G,225S
MK272423	2548522P000FL_Sf	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83L,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G,210S,225S
MK272424	2548522P000FL_Si	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83L,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G,210S,225S
MK272425	2548522P000FL_Sj	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83L,87Q,92P,96I,116A,128D,148V,176HQ,178T,200S,207T,208G,210S,225S
MK272426	2548522P000FL_Sk	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83L,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G,210S,225S
MK272427	2548522P000FL_Sm	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83L,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G,210S,225S
MK272429	2548522P000FL_Sp	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83L,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G,210S,225S
MK272430	2548522P000FL_Sq	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83L,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G,210S,225S
MK272431	2548522P000FL_Sr	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,31G,33N,54M,58I,83L,87Q,92P,96I,116A,128D,148V,178T,200S,207T,208G,210S,225S
MK272716	2549583C001L_Sa	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
MK272717	2549583C001L_Sb	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,203R,207T,208G,225S
MK272718	2549583C001L_Sc	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
MK272719	2549583C001L_Sd	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,166N,178T,200S,207T,208G,225S
MK272720	2549583C001L_Se	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
MK272721	2549583C001L_Sf	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
MK272722	2549583C001L_Sg	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
MK272723	2549583C001L_Sh	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
MK272724	2549583C001L_Si	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
MK272725	2549583C001L_Sj	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
MK272726	2549583C001L_Sk	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
MK272727	2549583P000FL_Sa	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
MK272728	2549583P000FL_Sb	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
MK272729	2549583P000FL_Sc	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
MK272730	2549583P000FL_Sd	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
MK272731	2549583P000FL_Se	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
MK272732	2549583P000FL_Sf	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
MK272733	2549583P000FL_Sg	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
MK272734	2549583P000FL_Sh	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
MK272735	2549583P000FL_Si	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,10W,14S,15L,31G,33N,54M,58I,92P,120S,128D,178T,200S,207T,208G,225S
MK272432	2549813P000FL_Sb	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,48A,54M,58I,71D,83L,92P,96I,116A,128D,148V,149G,200S,207S,208G,225S
MK272433	2549813P000FL_Sc	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,48A,54M,58I,71D,83L,92P,96I,116A,128D,148V,149G,200S,207S,208G,225S
MK272434	2549813P000FL_Se	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,48A,54M,58I,71D,83L,92P,96I,116A,128D,148V,149G,200S,207S,208G,225S
MK272435	2549813P000FL_Sg	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,48A,54M,58I,71D,83L,92P,96I,116A,128D,134IV,148V,149G,200S,207S,208G,225S
MK272436	2549813P000FL_Si	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,48A,54M,58I,71D,83L,92P,96I,116A,128D,148V,149G,200S,207S,208G,225S
MK272437	2549813P000FL_Sj	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,48A,54M,58I,71D,83L,92P,96I,116A,128D,148V,149G,200S,207S,208G,225S
MK272438	2549813P000FL_Sk	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,48A,54M,58I,71D,83L,92P,96I,116A,128D,148V,149G,200S,207S,208G,225S
MK272439	2549813P000FL_Sl	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,48A,54M,58I,71D,83L,92P,96I,116A,128D,148V,149G,200S,207S,208G,225S
MK272440	2549813P000FL_Sm	Thailand	2015	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15V,31G,33N,48A,54M,58I,71D,83L,92P,96I,116A,128D,148V,149G,200S,207S,208G,225S
MK272529	2549844C001L_Sa	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,79D,83M,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
MK272530	2549844C001L_Sb	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,79D,83M,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
MK272531	2549844C001L_Sc	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,79D,83M,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
MK272532	2549844C001L_Sd	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,79D,83M,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
MK272533	2549844C001L_Se	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,79D,83M,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
MK272534	2549844C001L_Sg	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,79D,83M,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
MK272535	2549844C001L_Sh	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,79D,83M,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
MK272536	2549844C001L_Si	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,79D,83M,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
MK272537	2549844C001L_Sj	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,79D,83M,92P,110N,120S,128D,148V,178T,188IT,200S,207T,208G,225S
MK272538	2549844C001L_Sk	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,79D,83M,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
MK272687	2549844P000FL_Sa	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,79D,83M,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S,231F
MK272688	2549844P000FL_Sb	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,79D,83M,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
MK272689	2549844P000FL_Sd	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,79D,83M,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
MK272690	2549844P000FL_Se	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,79D,83M,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
MK272691	2549844P000FL_Sf	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,79D,83M,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
MK272692	2549844P000FL_Sg	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,79D,83M,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
MK272693	2549844P000FL_Sh	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,79D,83M,92P,110N,120S,128D,148V,167K,178T,200S,207T,208G,225S
MK272694	2549844P000FL_Si	Thailand	2010	genomic RNA	subtype: CRF01_AE	1	231	6A,14P,15L,31G,33N,54M,58I,79D,83M,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S

Genbank References: capsid (p24)

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