Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Farinre (2021)	Subtype-specific differences in Gag-protease replication capacity of HIV-1 isolates from East and West Africa	Retrovirology 18 (1), 11 (2021)	2.08e-166	357	357	Naive	Plasma	Direct PCR	Molecular epidemiology

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Accession	IsolateName	Country	Coll Date	Clone	MolType	Source	Note	FirstAA	LastAA	MutList
MW123927	BS_001P	Cameroon	2006	BS 001	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,15V,27I,41T,54V,58I,71D,83T,92P,111IL,120S,124V,133RW,135V,148V,169F,178T,203R,208G
MW123928	BS_002P	Cameroon	2006	BS 002	genomic DNA		subtype: A1-like	1	231	6A,14S,15L,27I,31S,41T,54M,58I,71D,83G,86P,87HL,92Q,96L,97KR,102RS,109IS,110N,113EK,117GW,120S,132KR,148V,166DN,169F,178T,187D,200A,203KR,208G
MW123929	BS_003P	Cameroon	2006	BS 003	genomic DNA		subtype: G	1	231	6A,14P,41T,71D,83M,86P,87Q,96I,98D,100T,110N,116R,120S,148V,169F,178T,180D,187D,203R,208G
MW123930	BS_004P	Cameroon	2006	BS 004	genomic DNA		subtype: G	1	231	6A,71D,83I,86Q,87Q,92P,96I,116R,120S,148V,169F,178T,187D,203R,208G,225S
MW123931	BS_005P	Cameroon	2006	BS 005	genomic DNA		subtype: CRF 02_AG	1	231	6A,11I,14S,15M,27I,54M,58I,71D,83I,96I,120S,148V,169F,171AV,178T,183DGNS,200S,207T,208G
MW123932	BS_006P	Cameroon	2006	BS 006	genomic DNA		subtype: CRF 02_AG	1	231	6A,15M,27I,41T,48A,54M,58I,71D,75D,83T,92P,96I,120G,135V,148V,154K,169F,171A,177G,178T,200S,203R,208G,225S
MW123933	BS_009P	Cameroon	2006	BS 009	genomic DNA		subtype: CRF 02_AG	1	231	6AV,27I,33N,54M,58I,71D,120S,148V,169F,171A,178T,183G,187D,207T,208G
MW123934	BS_010P	Cameroon	2006	BS 010	genomic DNA		subtype: A1	1	231	6A,11I,14S,15L,27I,50G,58V,75D,83L,92P,111P,120G,128D,131R,148V,154K,169F,171V,178T,191I,203R,207T,208G,211I
MW123935	BS_011P	Cameroon	2006	BS 011	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14P,15M,26AV,27I,41T,54M,58I,71D,92P,111IL,120S,135V,148V,154K,169F,178T,180D,187D,200N,203R,208G
MW123936	BS_012P	Cameroon	2006	BS 012	genomic DNA		subtype: G	1	231	6A,15IL,30R,71D,79D,83Q,86R,87Q,88V,92P,96I,98D,100S,116R,120S,148V,169F,180D,183G,187D,203R,208G
MW123937	BS_013P	Cameroon	2006	BS 013	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,27I,54M,58I,71D,83M,87Q,92P,96I,120S,135V,148V,169F,178T,180D,203R,208G
MW123938	BS_014P	Cameroon	2006	BS 014	genomic DNA		subtype: CRF 02_AG	1	231	6V,11T,14S,15L,27I,54M,58I,71D,83T,92P,110N,120S,148V,169F,170R,178T,200S,207T,208G
MW123939	BS_016P	Cameroon	2006	BS 016	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14N,15M,27I,31G,54V,58I,71D,87Q,92P,110N,115V,120S,148V,169F,178T,204G,207T,208G,225S
MW123940	BS_019P	Cameroon	2006	BS 019	genomic DNA		subtype: CRF 02_AG	1	231	6A,11I,14N,15L,27I,31G,54M,58I,71D,92P,115M,116N,120S,124V,128D,148V,154K,169F,178T,200S,207T,208G
MW123941	BS_020P	Cameroon	2006	BS 020	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,15M,26AV,27I,54M,58I,71D,79D,83T,92P,96MV,120S,148V,169F,178T,200S,203KR,208G
MW123942	BS_021P	Cameroon	2006	BS 021	genomic DNA		subtype: CRF 02_AG	1	231	6A,14P,15M,27I,54M,58I,71D,83L,92P,120S,128D,129L,148V,169F,200S,203R,208G
MW123943	BS_022P	Cameroon	2006	BS 022	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,15M,27I,54M,58I,71D,83M,91V,110N,120G,148V,169F,178T,199R,200S,207T,208G
MW123944	BS_023P	Cameroon	2006	BS 023	genomic DNA		subtype: CRF 02_AG	1	231	6A,11I,14P,15M,27I,31G,33N,50T,54M,58I,71D,83L,86I,91N,92P,115V,120S,128D,148V,169F,178T,200A,203R,207T,208G
MW123945	BS_024P	Cameroon	2006	BS 024	genomic DNA		subtype: CRF 37_CPX	1	231	6A,10L,11T,14T,15M,41T,54M,58I,71D,91N,92P,120S,128D,148V,169F,178T,200S,203R,204G,207S,208G
MW123946	BS_025P	Cameroon	2006	BS 025	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,27I,45DE,54M,58I,71D,83I,91V,120S,148V,169F,178T,187D,200S,208G,225GS
MW123947	BS_026P	Cameroon	2006	BS 026	genomic DNA		subtype: CRF 01_AE	1	231	6A,27I,31G,33N,54M,58I,71D,92P,120G,123A,128D,148V,169F,178T,200S,207T,208G,225S
MW123948	BS_027P	Cameroon	2006	BS 027	genomic DNA		subtype: CRF 37_CPX	1	231	6A,11T,15L,41T,54M,58I,71D,92P,96IM,108ST,120S,121T,129IM,148V,169F,171AV,178T,180D,200HPSY,207T,208G,225S
MW123949	BS_029P	Cameroon	2006	BS 029	genomic DNA		subtype: CRF 02_AG	1	231	6A,10H,27I,41T,50F,52I,54M,58V,71D,81X,83G,91V,96L,119A,120S,132K,148V,169F,178T,180D,203R
MW123950	BS_030P	Cameroon	2006	BS 030	genomic DNA		subtype: D	1	231	6L,15L,27I,33N,83ILM,91IV,120S,148V,178T,208G,225S
MW123951	BS_032P	Cameroon	2006	BS 032	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,27I,54M,58I,71D,79D,92Q,120S,148V,169F,178T,200S,207T,208G
MW123952	BS_035P	Cameroon	2006	BS 035	genomic DNA		subtype: CRF 11_CPX	1	231	6A,15V,54M,58I,71D,83L,87Q,91V,120S,128D,131R,148V,154K,169F,178T,183G,187D,191I,200S,203R,208G
MW123953	BS_038P	Cameroon	2006	BS 038	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,27I,54M,58I,71D,83L,92P,120G,123A,124V,128D,148V,169F,180D,183G,191IV,207T,208G
MW123954	BS_039P	Cameroon	2006	BS 039	genomic DNA		subtype: CRF 02_AG	1	231	6A,11I,12HY,14S,15M,41T,54M,58I,71D,83T,87Q,91F,92P,111P,116A,120S,135V,141V,163E,169F,178T,180D,200A,203R,208G,225S
MW123956	BS_042P	Cameroon	2006	BS 042	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,27I,54M,58I,71D,83L,92P,120G,123A,124V,128D,148V,169F,180D,183G,191I,207T,208G
MW123957	BS_043P	Cameroon	2006	BS 043	genomic DNA		subtype: CRF 02_AG	1	231	6A,15V,31G,54M,58I,71D,83I,120S,148V,169F,178T,200S,207T,208G
MW123958	BS_044P	Cameroon	2006	BS 044	genomic DNA		subtype: CRF 02_AG	1	231	6A,10W,11T,14N,26A,27I,41T,49P_S,50K,51K,54M,58I,71D,83I,120S,135V,148V,160S,169F,178T,183S,200S,203R,208G
MW123959	BS_045P	Cameroon	2006	BS 045	genomic DNA		subtype: CRF 02_AG	1	231	6A,16T,27I,54M,58I,65AT,71D,83T,87Q,92P,96I,120S,148V,169F,178T,183G,207T,208G
MW123961	BS_047P	Cameroon	2006	BS 047	genomic DNA		subtype: F2	1	231	6L,27IV,31G,33N,71D,75D,79D,83L,87HQ,96L,116A,124V,148V,154K,169F,178T,183G,187D,207S,208G,210S,225S,230I
MW123962	BS_048P	Cameroon	2006	BS 048	genomic DNA		subtype: G	1	231	3GV,6A,9H,12HP,15L,27I,41T,68MV,71D,83L,86Q,87Q,92P,96I,110N,116T,120S,146C,148V,154K,169F,177S,187D,207T,208G,230I
MW123963	BS_049P	Cameroon	2006	BS 049	genomic DNA		subtype: F2	1	231	6L,31G,33N,71D,75D,79D,83L,96L,110ST,116A,124V,148V,154K,169F,178T,183G,187D,207S,208G,210S,225S,230I
MW123964	BS_050P	Cameroon	2006	BS 050	genomic DNA		subtype: CRF 02_AG	1	231	6A,11I,14N,15L,27I,31G,54M,58I,71D,83I,92P,111P,115M,116A,120S,124V,128D,148V,169F,171V,178T,200S,201L,207R,208G
MW123965	BS_051P	Cameroon	2006	BS 051	genomic DNA		subtype: G	1	231	6X,11AV,14PT,15L,41T,71D,83IM,86P,87Q,96I,110S,116T,120S,148V,154K,169F,178T,180D,187D,203R,208G
MW123966	BS_053P	Cameroon	2006	BS 053	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,15M,27I,54M,58I,71D,83I,92P,120S,124IV,148V,169F,178T,180D,207T,208G
MW123967	BS_054P	Cameroon	2006	BS 054	genomic DNA		subtype: D	1	231	2IV,6L,15L,27I,33NS,41T,50S,83L,87Q,91V,120S,124IV,148V,180D,208G
MW123968	BS_055P	Cameroon	2006	BS 055	genomic DNA		subtype: CRF 02_AG	1	231	6A,11IV,14N,15M,27I,41T,54M,58I,71D,83L,91V,116A,120S,128D,148V,169F,178T,200S,203R,208G
MW123969	BS_056P	Cameroon	2006	BS 056	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15L,26A,27I,54M,58I,71D,79D,83T,92P,120S,148V,169F,180D,203R,208G
MW123970	BS_057P	Cameroon	2006	BS 057	genomic DNA		subtype: CRF 11_CPX	1	231	6A,54M,58I,71D,72A,83T,91M,92P,97RS,107S,120G,132K,136M,140R,154K,169F,171A,178T,180D,191T,200S,203R,208G,225S
MW123971	BS_064P	Cameroon	2006	BS 064	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14N,15M,27I,54M,58I,71D,83X,110N,115V,116A,120G,128D,148V,169F,180D,200S,207T,208G,230I
MW123972	BS_065P	Cameroon	2006	BS 065	genomic DNA		subtype: CRF 22_01A1	1	231	3IV,6T,14P,15L,31G,33N,54M,58I,71D,91N,92P,110N,116Q,120S,148V,169F,178T,183H,191IV,200S,207T,208G,210S,225S
MW123973	BS_066P	Cameroon	2006	BS 066	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,15M,27I,41T,54M,58I,71D,83T,92P,98D,120S,124V,135V,148V,154K,169F,178T,180D,203R,208G
MW123974	BS_071P	Cameroon	2006	BS 071	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14N,15L,27I,41T,48A,50H,54M,58I,71D,83I,120S,148V,169F,178T,200S,203R,208G,210S
MW123975	BS_072P	Cameroon	2006	BS 072	genomic DNA		subtype: F2	1	231	6A,15V,31G,33N,54M,58I,71D,83I,91N,92P,120S,148V,154K,169F,178T,187D,200S,207T,208G
MW123976	BS_073P	Cameroon	2006	BS 073	genomic DNA		subtype: CRF 02_AG	1	231	6A,14T,15M,27I,54M,58I,71D,83T,92P,110N,120S,128D,148V,169F,178T,185MR,200S,208G
MW123977	BS_074P	Cameroon	2006	BS 074	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,15M,27I,54M,58I,71D,92P,120S,135V,148V,169F,178T,200S,203R,210S
MW123978	BS_075P	Cameroon	2006	BS 075	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,27I,54M,58I,71D,83I,92P,110N,120S,128D,148V,169F,178T,208G,225S
MW123979	BS_076P	Cameroon	2006	BS 076	genomic DNA		subtype: CRF 09_cpx	1	231	6A,11I,12Y,15M,27I,41T,54M,58I,71D,72A,83M,91N,92P,115M,116A,118I,120G,148V,154K,169F,177G,178T,203R,208G,225S
MW123980	BS_077P	Cameroon	2006	BS 077	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14N,15M,27I,54M,58I,71D,83L,115V,128D,148V,169F,178T,200S,207T,208G
MW123981	BS_078P	Cameroon	2006	BS 078	genomic DNA		subtype: CRF 22_01A1	1	231	6A,15L,31G,33N,54M,58I,71D,79D,83T,91H,92P,96I,99PS,116V,148V,169F,178T,200S,207T,208G
MW123982	BS_081P	Cameroon	2006	BS 081	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,15IM,27I,33NS,54M,58I,71D,83T,87Q,92P,96I,98D,148V,169F,178T,203R,208G,225S
MW123983	BS_083P	Cameroon	2006	BS 083	genomic DNA		subtype: CRF 02_AG	1	231	6V,15M,27I,50A,54M,58I,71D,83L,91V,110N,128D,148V,169F,171A,178T,180D,200S,208G,225S
MW123984	BS_085P	Cameroon	2006	BS 085	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,15L,27I,31S,54M,58I,71D,87Q,92P,120S,128D,148V,169F,178T,183H,199R,200S,207T,208G
MW123985	BS_086P	Cameroon	2006	BS 086	genomic DNA		subtype: CRF 02_AG	1	231	6AT,11AITV,15L,27I,31S,54M,58I,71D,83I,92P,120G,135V,148V,169F,171V,178T,200S,207T,208G
MW123986	BS_088P	Cameroon	2006	BS 088	genomic DNA		subtype: CRF 01_AE	1	231	6V,15L,27I,31G,33N,54M,58I,71D,92P,120S,128D,148V,154K,169F,178T,207T,208G,210S
MW123987	BS_090P	Cameroon	2006	BS 090	genomic DNA		subtype: CRF 01_AE	1	231	6A,27I,31G,33N,54M,58I,71D,83L,92P,120G,128D,148V,169F,178T,200S,207T,208G
MW123988	BS_092P	Cameroon	2006	BS 092	genomic DNA		subtype: CRF 11_CPX	1	231	6A,54A,58I,71D,79D,83I,86P,87Q,92P,96I,116R,120S,148V,169F,178T,183G,187D,203R,208G
MW123989	BS_094P	Cameroon	2006	BS 094	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,15L,27I,31S,54M,58I,71D,83I,120S,148V,169F,178T,200S,207S,208G
MW123990	BS_096P	Cameroon	2006	BS 096	genomic DNA		subtype: CRF 02_AG	1	231	6A,14N,15M,27I,54M,58I,71D,83T,86L,112P,120S,128D,148V,169F,178T,182EK,200S,203R,208G
MW123991	BS_097P	Cameroon	2006	BS 097	genomic DNA		subtype: A1	1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,86A,87Q,92P,96I,111P,116T,120S,128D,148V,169F,178T,180D,187AE,200S,203R,207A,208G
MW123992	BS_099P	Cameroon	2006	BS 099	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14N,15L,27I,31G,47S,54M,58I,71D,83T,91V,92P,115M,120S,148V,154K,169F,178T,200S,207T,208G
MW123993	BS_101P	Cameroon	2006	BS 101	genomic DNA		subtype: CRF 45_cpx	1	231	4P,6A,14G,26A,27I,41T,54M,58V,71D,79D,92P,120S,148V,154KR,169F,178T,203R,208G
MW123994	BS_102P	Cameroon	2006	BS 102	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14N,15M,27I,54M,58I,71D,92P,120S,128D,148V,169F,178T,188ST,200S,207T,208G,230IV
MW123995	BS_105P	Cameroon	2006	BS 105	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14P,15M,16T,27I,41T,54M,58I,71D,83AITV,86A,87Q,91F,92P,120S,148V,169F,187D,200A,207T,208G,210S
MW123996	BS_107P	Cameroon	2006	BS 107	genomic DNA		subtype: CRF 22_01A1	1	231	6A,11I,14P,15M,17A,31G,33N,54M,58I,71D,91N,92P,110N,148V,169F,178T,200A,203R,207T,208G,209P,210S,225S
MW123997	BS_114P	Cameroon	2006	BS 114	genomic DNA		subtype: CRF 22_01A1	1	231	6A,15IL,31G,33N,54M,58I,71D,92P,96I,120S,148V,169F,178T,187D,200S,207T,208G
MW123998	BS_115P	Cameroon	2006	BS 115	genomic DNA		subtype: CRF 22_01A1	1	231	3I,6A,27I,31G,33N,54M,58I,71D,91N,92P,148V,162K,169F,178T,200S,207T,208G
MW123999	BS_117P	Cameroon	2006	BS 117	genomic DNA		subtype: CRF 02_AG	1	231	2V,6A,11I,14N,15M,27I,41T,54M,58I,71D,120S,135V,148V,167K,169F,178T,200S,203R,208G
MW124000	BS_118P	Cameroon	2006	BS 118	genomic DNA		subtype: CRF 11_CPX	1	231	6A,54M,58I,71D,83L,91A,92P,120G,128D,131R,148V,154K,169F,171C,178T,183G,187DE,191I,203R,204S,207S,208G,210S
MW124001	BS_119P	Cameroon	2006	BS 119	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14NS,15IM,27I,41T,54M,58I,71D,83T,91V,110N,120S,135V,148V,169F,178T,180DE,200S,203R,208G,225S
MW124002	BS_120P	Cameroon	2006	BS 120	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,27I,54M,58I,71D,91A,92P,120G,135V,148V,169F,178T,203R,208G
MW124003	BS_123P	Cameroon	2006	BS 123	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,15IM,27I,41T,54M,58I,71D,75D,92P,111I,120S,135V,148V,169F,178T,180D,200S,203R
MW124004	BS_125P	Cameroon	2006	BS 125	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,15M,27I,41T,54S,58V,71D,75D,83T,92P,120S,135V,148V,169F,178T,200S,203R,208G,211I
MW124006	BS_129P	Cameroon	2006	BS 129	genomic DNA		subtype: CRF 02_AG	1	231	6A,26A,27I,41T,54M,58I,71D,92P,120S,135V,148V,169F,178T,203R,208G
MW124007	BS_130P	Cameroon	2006	BS 130	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,15L,30R,31G,54M,58I,71D,83L,92P,110N,120S,128D,148V,169F,178T,188S,200S,207T,208G
MW124008	BS_133P	Cameroon	2006	BS 133	genomic DNA		subtype: H	1	231	6A,54A,71D,92P,116A,120S,146CS,148V,169F,177C,178T,180DE,187N,203R,208G,211I,225S
MW124009	BS_135P	Cameroon	2006	BS 135	genomic DNA		subtype: H	1	231	6A,54A,71D,92P,116A,120S,148V,169F,177C,178T,180D,187N,203R,208G,211I,225S
MW124010	BS_136P	Cameroon	2006	BS 136	genomic DNA		subtype: D	1	231	6L,27I,41T,83L,96I,116A,124V,148V,154K,180D,225S
MW124011	BS_137P	Cameroon	2006	BS 137	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15L,26A,27I,54M,58I,71D,83L,87Q,92P,110N,120S,148V,169F,178T,183G,207T,208G,225S
MW124012	BS_139P	Cameroon	2006	BS 139	genomic DNA		subtype: D	1	231	6L,14P,15L,27I,33N,44A,83L,87Q,91V,96L,120S,148V,208G,225S
MW124013	BS_140P	Cameroon	2006	BS 140	genomic DNA		subtype: CRF 02_AG	1	231	6A,54M,58I,71D,78G,92P,120S,148V,169F,171A,178T,180D,200A,208G
MW124014	BS_141P	Cameroon	2006	BS 141	genomic DNA		subtype: G	1	231	6A,10P,11I,27I,71D,83M,86Q,87Q,92P,96I,116R,120S,124V,148V,169F,178T,187D,203R,208G,225S
MW124015	BS_142P	Cameroon	2006	BS 142	genomic DNA		subtype: CRF 02_AG	1	231	6A,10W,11T,14N,27I,54M,58I,71D,83T,128D,148V,169F,178T,200S,203R,208G
MW124016	BS_143P	Cameroon	2006	BS 143	genomic DNA		subtype: CRF 02_AG	1	231	6A,11I,26A,27I,54M,58I,71D,79DE,83IV,91V,92P,120S,148V,169F,178T,208G,217AV
MW124017	BS_144P	Cameroon	2006	BS 144	genomic DNA		subtype: CRF 01_AE	1	221	4QR,6A,15L,31G,33N,54M,58I,71D,83L,92P,120G,128D,148V,166ADNT,168FL,169AFSV,170EK,171AT,173RT,175EGKR,176X,177ADE,178AGRT,179QR,185T,187D,188S,189F,190I,193K,194K,195D,196T,198G,200Y,203N,205V,207A,208K,209I,210A,214E,215N,216S,218*,219H,221G
MW124018	BS_145P	Cameroon	2006	BS 145	genomic DNA		subtype: CRF 22_01A1	1	231	6A,11M,14P,15L,31G,33N,54M,58I,71D,91N,92P,120S,148V,169F,178T,200S,207T,208G
MW124019	BS_147P	Cameroon	2006	BS 147	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14N,15M,27I,54M,58I,71D,83A,86A,91N,92P,120S,148V,169F,178T,187D,199R,200S,208G
MW124020	BS_159P	Cameroon	2006	BS 159	genomic DNA		subtype: CRF 45_cpx	1	231	6A,26A,27I,54M,58I,71D,79D,91V,92P,120S,148V,169F,178T,203R,208G
MW124021	BS_160P	Cameroon	2006	BS 160	genomic DNA		subtype: CRF 11_CPX	1	231	6A,27I,41T,54M,58I,71D,83L,92P,96V,110N,116Q,120G,124V,128D,131R,148V,169F,178T,183G,191I,203R,207A,208G,225S
MW124022	BS_166P	Cameroon	2006	BS 166	genomic DNA		subtype: A1, G	1	231	6A,14P,54S,58A,71D,83I,86Q,87Q,92P,96I,98D,116A,120S,128D,148V,169F,178T,180D,187D,203R,208G
MW124023	BS_168P	Cameroon	2006	BS 168	genomic DNA		subtype: CRF 02_AG	1	231	6A,14N,27I,54M,58I,71D,83I,91A,115V,120S,128D,148V,169F,177C,178T,194S,200S,203R,208G
MW124024	BS_170P	Cameroon	2006	BS 170	genomic DNA		subtype: A1, G	1	231	6A,14P,27I,37L,54S,58V,71D,83I,86Q,87Q,92P,96I,98D,116A,120S,128D,148V,169F,178T,180D,187D,203R,208G
MW124025	BS_171P	Cameroon	2006	BS 171	genomic DNA		subtype: CRF 02_AG	1	231	6A,10W,11S,13N,15V,27I,58I,71D,83I,92P,111I,120S,124V,148V,169F,178T,200S,203R,208G
MW124026	BS_175P	Cameroon	2006	BS 175	genomic DNA		subtype: CRF 22_01A1	1	231	3M,6A,15L,31G,33N,54M,58I,71D,83AITV,91N,92P,120G,148V,169F,178T,200S,207T,208G
MW124027	BS_176P	Cameroon	2006	BS 176	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,15M,27I,54M,58I,71D,83I,116A,120G,128D,148V,169F,178T,187D,200S,203R,208G
MW124028	BS_178P	Cameroon	2006	BS 178	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,15M,27I,54M,58I,71D,83I,92P,97RS,120S,124V,148V,169F,178T,200S,207T,208G
MW124029	BS_179P	Cameroon	2006	BS 179	genomic DNA		subtype: D	1	231	6IL,27I,78V,83L,116A,120S,148V,177C,178T,208Q
MW124141	Ken_076P	Kenya	2009	PC 076	genomic DNA		subtype: A1	1	231	3GV,6A,11I,14N,15L,20LW,23GW,27I,50G,54M,58V,71D,83L,87Q,92P,95PQR,96L,104IL,107A,111P,120G,128D,129L,131KR,148V,154K,169F,178T,183S,191I,200S,207T,208G
MW124142	Ken_077P	Kenya	2009	PC 077	genomic DNA		subtype: A1	1	231	6A,9H,11I,15L,26A,27I,30R,31G,54M,58I,71D,83L,86A,87Q,91V,92Q,93A,98D,111T,120G,139H,148V,154K,169F,178T,180D,203R,204G,207A,208G
MW124143	Ken_078P	Kenya	2009	PC 078	genomic DNA		subtype: A1	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,87Q,88M,92P,96L,111LP,116A,120GS,121KNT,124IV,148V,154K,169F,171A,173GR,178T,183G,200S,203R,207S,208G
MW124144	Ken_079P	Kenya	2009	PC 079	genomic DNA		subtype: A1D	1	231	6A,14S,71D,83LV,87HQ,88X,92P,96LM,111LP,116AG,120GS,121KNT,124V,128D,148V,154K,169F,171AT,178T,183DGNS,187DE,200AS,203R,207S,208G,225GS
MW124146	Ken_081P	Kenya	2009	PC 081	genomic DNA		subtype: A1	1	231	6A,12L,14N,15L,27I,31G,54M,58I,71D,83L,86A,92P,111P,115L,120S,128D,148V,149GS,154K,169F,178T,200S,203R,207T,208G
MW124147	Ken_083P	Kenya	2009	PC 083	genomic DNA		subtype: A1	1	231	6A,11I,14S,27I,54M,58I,59I,71D,83L,87Q,92P,96L,111P,120G,128D,148V,154K,169F,178T,183G,200S,203R,207A,208G
MW124148	Ken_087P	Kenya	2009	PC 087	genomic DNA		subtype: A1	1	231	6A,14S,15L,27I,29D,54M,58I,71D,83L,111P,116A,120G,131R,148V,154K,169F,178T,180D,187D,200S,203R,208G
MW124149	Ken_088P	Kenya	2009	PC 088	genomic DNA		subtype: A1	1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,87Q,92P,96I,111P,116R,128D,148V,154K,169F,171A,178T,180D,199R,200S,207T,208G,230I
MW124150	Ken_089P	Kenya	2009	PC 089	genomic DNA		subtype: A1	1	231	6A,10P,15V,27I,54M,58I,71D,79D,83L,111IT,116A,120G,128D,148V,154K,169F,171A,178ST,180DE,183G,200S,203R,207Q,208G
MW124151	Ken_092P	Kenya	2009	PC 092	genomic DNA		subtype: A1	1	231	6A,14T,15L,27I,50H,54M,58I,71D,83L,92P,108S,111T,115L,120G,128D,148V,154K,169F,171A,178T,180D,200S,203R,204G,207A,208G,225S
MW124152	Ken_093P	Kenya	2009	PC 093	genomic DNA		subtype: A1	1	231	6A,14N,15L,27I,50H,54M,58I,83L,92P,108S,111P,120G,128D,148V,154K,169F,171A,178T,180D,203R,204G,208G,225S
MW124153	Ken_100P	Kenya	2009	PC 100	genomic DNA		subtype: A1	1	231	2L,6A,11I,12Y,14S,15L,27I,30R,31G,33N,48N,54M,58I,71D,83L,87Q,92P,111P,116A,120G,128D,148V,154K,160S,163E,169F,178T,183G,187D,200A,203R,207S,208G,225S
MW124154	Ken_121P	Kenya	2009	PC 121	genomic DNA		subtype: A1	1	231	6A,12Y,14T,15F,27I,29D,31G,54M,58I,71D,91H,92P,111P,128D,148V,154K,169F,178T,183G,191I,207A,208G
MW124155	Ken_122P	Kenya	2009	PC 122	genomic DNA		subtype: A1	1	231	6A,11I,14S,15L,27I,50G,54M,58V,71D,83L,92P,111P,120G,128D,148V,154K,169F,178T,200S,201L,208G,210S,225S
MW124156	Ken_137P	Kenya	2009	PC 137	genomic DNA		subtype: A1	1	231	6A,14S,15L,27I,54M,58I,68I,71D,79D,83L,92P,111P,120S,148V,154K,169F,171C,178T,183G,200S,203R,204G,207T,208G,225S
MW124157	Ken_141P	Kenya	2009	PC 141	genomic DNA		subtype: A1	1	231	6A,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,116A,120G,124V,128D,148V,154K,169F,178T,180D,200S,203R,207PS,208G
MW124158	Ken_142P	Kenya	2009	PC 142	genomic DNA		subtype: A1D	1	231	6A,11T,12Y,13S,14P,15L,27I,29D,54M,58V,71D,75D,83L,91V,96L,111P,115V,116A,128D,148V,169F,180D,183K,203R,208G,225CFS
MW124159	Ken_143P	Kenya	2009	PC 143	genomic DNA		subtype: A1	1	231	6A,14T,15L,27I,54M,58I,71D,83L,87Q,92P,96L,111I,120A,128D,148V,154K,169F,178T,180D,200S,203R,204G,207T,208G
MW124160	Ken_144P	Kenya	2009	PC 144	genomic DNA		subtype: A1	1	231	3M,6A,11I,12Y,14G,27I,30R,36I,54M,58I,71D,83L,87Q,96L,111P,115V,116A,118T,128D,148V,154K,169F,178T,183G,191I,200S,203R,207S,208G,225S
MW124161	Ken_194P	Kenya	2009	PC 194	genomic DNA		subtype: A1	1	231	6A,11IT,14S,15L,27I,41T,54M,58I,71DN,83L,87Q,92P,96L,111P,116T,120G,128D,148V,154K,169F,178T,180D,191I,200S,203R,208G
MW124162	Ken_195P	Kenya	2009	PC 195	genomic DNA		subtype: A1	1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,111P,116A,120G,128D,148V,154K,169F,171C,178T,180DE,183DGNS,191I,200S,203R,207T,208G,225S
MW124163	Ken_196P	Kenya	2009	PC 196	genomic DNA		subtype: D	1	231	6L,14S,15L,27I,83L,91V,113D,116A,148V
MW124164	Ken_197P	Kenya	2009	PC 197	genomic DNA		subtype: A1	2	231	2S,6A,11I,14N,15L,27I,54M,58I,71D,83L,91IV,92P,111P,120S,128D,148V,154K,169F,171C,178T,180D,200S,203R,204G,207T,208G,225S
MW124165	Ken_198P	Kenya	2009	PC 198	genomic DNA		subtype: A1	1	231	6A,10W,11A,14T,15L,27I,31G,54M,58I,71D,83L,92P,111V,113D,115M,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
MW124167	Ken_200P	Kenya	2009	PC 200	genomic DNA		subtype: A1	1	231	6A,11I,14N,15L,27I,31G,36T,45D,50Y,54M,58I,71D,83L,92P,111P,120GS,128D,148V,154K,169F,178T,183G,191I,200S,203KR,207T,208G
MW124168	Ken_201P	Kenya	2009	PC 201	genomic DNA		subtype: A1	1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,91V,92P,111P,120S,128D,148V,154K,169F,178T,183G,203R,204S,207T,208G,230I
MW124169	Ken_202P	Kenya	2009	PC 202	genomic DNA		subtype: A1	1	231	6A,11I,14P,15M,16T,26A,27I,30R,31G,54M,58I,71D,79D,83L,87Q,91V,111P,116A,120H,128D,148V,154K,169F,178T,180D,200A,203R,207S,208G,225A
MW124171	Ken_204P	Kenya	2009	PC 204	genomic DNA		subtype: A1	1	231	6A,11I,14N,15L,27I,36I,45D,50Y,54M,58I,71D,83L,92P,111T,115L,120S,128D,148V,154K,163E,169F,178T,183G,191I,200S,203R,207T,208G
MW124172	Ken_205P	Kenya	2009	PC 205	genomic DNA		subtype: A1	1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,171C,172V,178T,180D,200S,203R,204G,207T,208G
MW124173	Ken_206P	Kenya	2009	PC 206	genomic DNA		subtype: A1	1	231	6A,11I,15L,27I,30R,31G,54M,58I,71D,83L,92P,111T,120G,128D,148V,154K,169F,178T,183G,200A,203R,207S,208G
MW124175	Ken_217P	Kenya	2009	PC 217	genomic DNA		subtype: A1	1	231	6A,11I,14N,15L,27I,36I,45D,50Y,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,183G,191I,200S,203R,207T,208G
MW124176	Ken_222P	Kenya	2009	PC 222	genomic DNA		subtype: A1	1	231	6A,14S,15L,27I,31G,41T,54M,58I,71D,79D,83L,87Q,92P,96L,111P,115M,120S,148V,169F,178ST,180D,200S,203R,207S,208G
MW124177	Ken_223P	Kenya	2009	PC 223	genomic DNA		subtype: A1D	1	231	6L,27I,41T,83L,116A,124V,148V,180D
MW124179	Ken_225P	Kenya	2009	PC 225	genomic DNA		subtype: A1	1	231	6A,14N,15L,27I,31G,41T,58I,71D,79D,83L,87Q,92P,96L,111P,115M,120GS,148V,169F,178T,180D,191I,200S,203R,207Q,208G,225S
MW124180	Ken_227P	Kenya	2009	PC 227	genomic DNA		subtype: A1D	1	231	6A,11I,15L,27I,30R,31G,50G,54M,58I,71D,79D,83L,87Q,92P,111P,120S,148V,154K,169F,178T,183G,200S,207A,208G,225S
MW124181	Ken_229P	Kenya	2009	PC 229	genomic DNA		subtype: A1	1	231	6A,10W,11T,14N,15L,27I,54M,58I,71D,83L,92P,94N,96L,111P,115L,116Q,120G,128D,148V,169F,178T,200S,203R,207A,208G
MW124031	NG_001P	Nigeria	2007	NG_001P	genomic DNA		subtype: CRF 43_02G	1	231	6A,14P,15M,27I,41T,52M,71D,83L,86P,87Q,91IL,110NS,116A,120S,148V,154K,169F,178T,180D,200N,203R,207AT,208G,225S
MW124032	NG_002P	Nigeria	2007	NG_002P	genomic DNA		subtype: CRF 02_AG	1	231	6A,27I,31G,33N,54M,58I,71D,79D,83IMV,92P,96I,120S,124IV,148V,169F,178T,199R,200S,207T,208G,210S
MW124033	NG_003P	Nigeria	2007	NG_003P	genomic DNA		subtype: G	1	231	6A,41T,71D,83L,86Q,87Q,92P,96I,116T,146C,154K,169F,178T,203R,207A,208G,225S
MW124034	NG_006P	Nigeria	2007	NG_006P	genomic DNA		subtype: CRF 02_AG	1	231	6A,11I,26A,30R,41T,54M,58I,71D,83T,92P,96I,120G,135V,154K,169F,171A,178T,180D,191T,203R,204G,208G,225S
MW124035	NG_007P	Nigeria	2007	NG_007P	genomic DNA		subtype: G	1	231	6A,71D,83L,92P,120S,148V,169F,178T,187D,203R,204G,208G
MW124036	NG_012P	Nigeria	2007	NG_012P	genomic DNA		subtype: G	1	231	6A,27I,41T,71D,75D,83L,86P,87Q,96I,116A,120S,148V,154K,169F,178T,183G,203R,207A,208G,225S
MW124037	NG_030P	Nigeria	2007	NG_030P	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,27I,54M,58I,71D,92P,120S,135V,148V,169F,178A,180P,200S,203R,208G
MW124038	NG_032P	Nigeria	2007	NG_032P	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,27I,54M,58I,71D,83T,92P,115V,120S,135V,148V,169F,171V,178T,200S,203R,208G,210S,225S
MW124039	NG_033P	Nigeria	2007	NG_033P	genomic DNA		subtype: CRF 02_AG	1	231	2V,6A,15M,27I,31S,54M,58I,71D,83T,92P,107S,120S,135V,148V,154K,169F,178T,187D,200S,203R,208G,211V,225S
MW124040	NG_035P	Nigeria	2007	NG_035P	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,27I,41T,54M,58I,71D,83T,92P,120S,124V,135V,148V,169F,178T,180D,200N,203R,208G,225S
MW124041	NG_036P	Nigeria	2007	NG_036P	genomic DNA		subtype: G	1	231	6A,27I,41T,71D,75D,83LV,86PQ,87Q,91IV,96I,116T,148V,154K,169F,178T,180DE,183DGNS,187DE,203R,207A,208G,225S
MW124042	NG_038P	Nigeria	2007	NG_038P	genomic DNA		subtype: G	1	231	6A,15L,27I,41T,71D,83L,86P,87Q,92P,96I,116T,148V,154K,169F,178T,187D,200N,203R,207A,208G,225S
MW124044	NG_045P	Nigeria	2007	NG_045P	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,27I,54M,58I,71D,92P,120S,135V,148V,169F,178A,180P,200S,203R,208G
MW124045	NG_046P	Nigeria	2007	NG_046P	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,27I,54M,58I,71D,83T,92P,115V,120S,135V,148V,169F,171V,178T,200S,203R,208G,210S,225S
MW124046	NG_050P	Nigeria	2007	NG_050P	genomic DNA		subtype: G	1	231	6A,14S,27I,41T,71D,86Q,87Q,91V,96I,116T,148V,154K,169F,178T,180D,187D,203R,207A,208G,225S,230I
MW124047	NG_053P	Nigeria	2007	NG_053P	genomic DNA		subtype: CRF 02_AG	1	231	6V,11T,12Y,14V,15M,27I,54M,58I,71D,83T,87Q,92P,96L,111P,120G,135V,148V,169F,178T,183S,200S,203R,208G,225S
MW124048	NG_069P	Nigeria	2007	NG_069P	genomic DNA		subtype: CRF 02_AG	1	231	6A,15L,27I,41T,71D,83L,86P,87Q,92P,110N,120S,148V,154K,169F,178T,200S,203R,208G
MW124183	RW_002P	Rwanda	2009	PC 002	genomic DNA		subtype: A1	1	231	6A,11I,14N,15L,27I,30KR,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,171V,180D,191I,204S,207T,208G,210S
MW124184	RW_003P	Rwanda	2009	PC 003	genomic DNA		subtype: A1C	1	231	6A,11I,14N,15L,27I,50H,54M,58V,63R,71D,91V,111P,116A,120S,128D,148V,154K,169F,174S,178T,187D,200S,203R,208G,225S
MW124185	RW_004P	Rwanda	2009	PC 004	genomic DNA		subtype: A1	1	231	6A,11IV,13S,14AP,15IM,31G,41T,54M,58I,71D,83L,87Q,115M,120S,128D,129L,148V,154K,169F,178T,183G,200S,203R,207T,208G,225S
MW124186	RW_005P	Rwanda	2009	PC 005	genomic DNA		subtype: A1	1	231	6A,15V,27I,36I,58I,71D,83L,92P,111P,115V,120G,128D,148V,154K,169F,171A,180D,183G,187D,203R,207S,208G
MW124187	RW_006P	Rwanda	2009	PC 006	genomic DNA		subtype: A1	1	231	6A,11I,14S,15L,27I,33N,54M,58V,71D,83L,92P,111P,120S,128D,148V,154K,169F,180D,187D,200S,203R,208G,225S
MW124188	RW_008P	Rwanda	2009	PC 008	genomic DNA		subtype: A1	1	231	6A,11I,14T,15L,27I,54M,58I,71D,83L,91A,92P,111M,120S,128D,148V,154K,169F,171V,178T,183G,200S,207T,208G,225S
MW124189	RW_009P	Rwanda	2009	PC 009	genomic DNA		subtype: A1	1	231	6A,11T,12Y,15V,27I,30R,54M,58I,71D,83L,91V,92P,111P,120G,128D,148V,153V,154K,169F,171I,178T,183G,191I,200S,207T,208G,212EG,218CG,219LQ,225S,227KR
MW124190	RW_010P	Rwanda	2009	PC 010	genomic DNA		subtype: A1	1	231	6A,15V,26A,27I,30R,58I,68L,71D,83L,92P,120S,124V,128D,131R,148V,154K,169F,171I,177G,200S,203R,204G,207Q,208G,210S,216A,225S
MW124191	RW_011P	Rwanda	2009	PC 011	genomic DNA		subtype: A1	1	231	6A,15L,27I,47T,50G,54M,58V,71D,83L,92P,120S,128D,131R,148V,153V,154K,169F,171I,178T,183G,199R,200S,207T,208G,225S
MW124192	RW_012P	Rwanda	2009	PC 012	genomic DNA		subtype: A1C	1	231	6A,11I,15V,27I,54M,58I,71D,83L,87Q,92P,111I,115M,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
MW124194	RW_017P	Rwanda	2009	PC 017	genomic DNA		subtype: A1	1	231	6A,11I,12Y,15L,27I,29D,31G,33N,54M,58V,71D,83M,87Q,92P,96L,111P,115L,120G,128D,129L,148V,154K,169F,178T,183G,200S,207T,208G
MW124195	RW_018P	Rwanda	2009	PC 018	genomic DNA		subtype: A1	1	231	6A,11I,26A,30R,31G,54M,58I,71D,83L,92P,96I,110N,120G,123A,128D,139H,148V,154K,169F,178T,180D,200S,203R,208G,210S,225R
MW124196	RW_020P	Rwanda	2009	PC 020	genomic DNA		subtype: A1	1	231	6A,9H,15L,27I,54M,58V,71D,83L,92P,96I,111P,116A,120G,123A,128D,148V,154K,169F,171I,183G,187D,200S,207A,208G
MW124197	RW_027P	Rwanda	2009	PC 027	genomic DNA		subtype: A1	1	231	6A,11I,12Y,15M,16NS,20LW,27I,31G,33N,54M,58I,71D,79D,83L,91A,92P,111P,120G,139HN,148V,154K,169F,178T,180D,203R,204G,207T,208G
MW124198	RW_028P	Rwanda	2009	PC 028	genomic DNA		subtype: A1	1	231	6A,15L,27I,30R,54M,58I,71D,83L,92P,107S,111P,120GS,128D,148V,154K,169F,171A,180D,183S,187D,191I,200S,203R,208G
MW124199	RW_029P	Rwanda	2009	PC 029	genomic DNA		subtype: A1	1	231	6A,11I,14N,15L,27I,31G,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207S,208G,213EK,217AT,229GR
MW124200	RW_030P	Rwanda	2009	PC 030	genomic DNA		subtype: A1	1	231	6A,12Y,14P,15V,27I,54M,58I,71D,83L,87Q,92P,96L,110N,111S,112H,116T,120G,128D,148V,154K,169F,171A,178T,180D,200S,207T,208G
MW124201	RW_031P	Rwanda	2009	PC 031	genomic DNA		subtype: A1	1	231	6A,9A,14T,15L,27I,54M,58V,59I,71D,83L,92P,96I,111P,116Q,120G,128D,129L,148V,154K,169F,178T,183G,200S,203R,208G
MW124203	RW_033P	Rwanda	2009	PC 033	genomic DNA		subtype: A1	1	231	6A,11A,12Y,15V,19IT,41T,54M,58I,71D,82K,87Q,92P,96L,111P,120G,128D,148V,154K,169F,171C,180D,187D,191I,203R,204G,207T,208G,210S,225S
MW124204	RW_034P	Rwanda	2009	PC 034	genomic DNA		subtype: A1	1	231	2IV,6A,10F,11I,15L,27I,30R,31G,36IV,49PS,54M,58I,71D,83L,87Q,92P,96L,111P,120G,128D,148V,154K,169F,178T,183G,187D,200S,207T,208G,225S,230I
MW124205	RW_036P	Rwanda	2009	PC 036	genomic DNA		subtype: A1C	1	231	6L,14P,15M,17A,27I,41T,71D,91V,116A,120S,128D,148V,154K,169F,178T,187D,200N,203R,208G
MW124206	RW_039P	Rwanda	2009	PC 039	genomic DNA		subtype: A1D	1	231	6A,14S,15L,27I,54M,58I,71D,83L,87Q,88M,92P,96L,111P,116A,120G,121T,124V,128D,148V,154K,169F,171A,178T,183S,208G
MW124207	RW_040P	Rwanda	2009	PC 040	genomic DNA		subtype: A1	1	231	6A,15L,27I,50W,54M,56M,58I,71D,83L,87Q,92P,96L,120G,124V,131R,148I,153V,154K,169F,171I,178T,183G,187D,200S,203R,208G,210S
MW124208	RW_041P	Rwanda	2009	PC 041	genomic DNA		subtype: A1	1	231	6A,11I,12L,14T,15L,27I,54M,58I,71D,83IL,86LV,91IL,92P,96I,98DE,111P,115IL,116AP,120GS,128D,129L,148V,154K,169F,178T,183G,200S,203R,208G
MW124209	RW_042P	Rwanda	2009	PC 042	genomic DNA		subtype: A1	1	231	6A,12NY,14V,15L,26A,27IV,30R,36I,54M,58V,71D,83L,92P,111P,120G,128D,148V,169F,180D,200A,207S,208G,210S
MW124210	RW_043P	Rwanda	2009	PC 043	genomic DNA		subtype: A1	1	231	6A,11A,12Y,15V,24A,41T,58I,71D,83L,87Q,92P,96L,111P,120G,128D,148V,154K,169F,171C,180D,187D,191I,203R,204G,207T,208G,210S,225S
MW124211	RW_046P	Rwanda	2009	PC 046	genomic DNA		subtype: A1C	1	231	6L,14P,15M,17A,27I,41T,71D,91V,116A,120S,128D,148V,154K,169F,178T,187D,200N,203R,208G
MW124212	RW_101P	Rwanda	2009	PC 101	genomic DNA		subtype: A1	1	231	2V,6A,11I,15L,27I,30R,31G,48A,54M,58I,71D,83L,87Q,88V,92P,98D,111P,115V,116A,120G,128D,148V,154K,169F,180D,183H,200S,203R,207T,208G
MW124213	RW_104P	Rwanda	2009	PC 104	genomic DNA		subtype: A1	1	231	6A,10P,11I,14S,15L,27I,48I,54M,58I,71D,83L,92P,96L,111P,120G,128D,148V,154K,169F,183G,187D,191I,200S,203R,208G
MW124214	RW_105P	Rwanda	2009	PC 105	genomic DNA		subtype: A1	1	231	6A,11I,12Y,15V,54M,58I,71D,83L,87Q,91V,92P,96L,111P,120G,128D,148V,169F,171A,178T,180D,200S,207AITV,208G
MW124215	RW_106P	Rwanda	2009	PC 106	genomic DNA		subtype: A1	1	231	6A,15V,27I,54M,58I,71D,83L,92P,111P,120G,128D,148V,149G,154K,169F,190M,191I,200S,203R,208G
MW124216	RW_107P	Rwanda	2009	PC 107	genomic DNA		subtype: A1	1	231	6A,11I,12Y,15M,27I,54M,58I,71D,79D,83L,92P,111T,120G,128D,148V,154K,169F,171A,178T,180D,183G,191I,203R,207T,208G,225S
MW124217	RW_109P	Rwanda	2009	PC 109	genomic DNA		subtype: A1	1	231	2V,6A,11IV,12Y,15V,16PST,54M,58I,71D,83M,87Q,91L,92P,96L,111P,120G,148V,169F,171V,178T,183G,191I,203R,207S,208G,210S
MW124218	RW_128P	Rwanda	2009	PC 128	genomic DNA		subtype: A1	1	231	2V,6A,9H,15L,27I,30R,31G,48A,54M,58I,71D,83L,87Q,92P,111P,120G,127EG,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G,225S
MW124220	RW_154P	Rwanda	2009	PC 154	genomic DNA		subtype: A1	1	231	6A,11I,12Y,14P,15M,26A,27I,29D,54M,58IV,71D,83L,87Q,91V,92P,110NT,111V,120S,128D,148V,154KR,169F,180D,183G,187D,203R,207A,208G,210S
MW124221	RW_155P	Rwanda	2009	PC 155	genomic DNA		subtype: A1	1	231	6A,11I,14P,15V,27I,54M,58I,71D,83L,111P,116A,120S,128D,148V,169F,178T,180D,203R,208G,225S,230I
MW124222	RW_158P	Rwanda	2009	PC 158	genomic DNA		subtype: A1	1	231	6A,11I,15V,16T,27I,48I,54M,58I,71D,92P,96L,111P,118I,120G,128D,148V,154K,169F,180D,199R,200N,203R,207A,208G,225S
MW124223	RW_159P	Rwanda	2009	PC 159	genomic DNA		subtype: A1	1	231	6A,11I,14S,15L,27I,31G,54M,58I,71D,83L,92P,111T,120G,128D,148V,154K,169F,178T,180D,187D,200S,207T,208G
MW124224	RW_161P	Rwanda	2009	PC 161	genomic DNA		subtype: A1	1	231	6A,14T,15L,27I,31G,47G,50G,54M,58I,71D,83L,86A,87Q,92P,96I,111P,116R,120S,124V,128D,148V,153V,154K,169F,171I,178T,180D,200S,203R,207Q,208G
MW124225	RW_162P	Rwanda	2009	PC 162	genomic DNA		subtype: A1	1	231	6A,14S,15L,27I,54M,58I,71D,87P,91V,92P,96I,98D,111A,116R,120S,128D,148V,154K,169F,183G,187D,191I,200S,203R,208G,210S,225S
MW124049	SN_001P	Senegal	1995	SN 001	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,27I,41T,54M,58I,72V,92P,120S,124V,148I,169F,178T,200S,203R,208G
MW124050	SN_002P	Senegal	1995	SN 002	genomic DNA		subtype: CRF 02_AG	1	231	2V,6A,14S,15M,27I,41T,54M,58I,71D,75D,79D,83T,92P,110N,120S,135V,148V,169F,177G,178T,197G,200S,203R,208G,224Q,229P,230I
MW124051	SN_003P	Senegal	1995	SN 003	genomic DNA		subtype: C	1	231	6L,10N,14P,27I,31G,33N,41T,71D,83L,110N,116A,128D,135V,136M,148V,154K,169F,178T,180D,187D,203R,208G,225S
MW124052	SN_004P	Senegal	1995	SN 004	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14P,15M,26A,27I,41T,54M,58I,71D,92P,120S,135V,148V,160S,169F,200S,203R,208G
MW124053	SN_005P	Senegal	1995	SN 005	genomic DNA		subtype: CRF 02_AG	1	231	6A,9A,14S,15M,27I,54M,58I,71D,92P,120S,135V,154K,169F,178T,180D,193S,203R,208G,210S
MW124054	SN_006P	Senegal	1995	SN 006	genomic DNA		subtype: CRF 02_AG	1	231	6A,11I,14P,15M,27I,31G,33N,41T,54M,58I,71D,110N,115M,120S,135V,148V,169F,178T,199R,200S,203R,207Q,208G
MW124055	SN_007P	Senegal	1995	SN 007	genomic DNA		subtype: A3	1	231	6A,14S,27I,54M,58I,71D,91V,92P,115V,120S,124V,131R,148V,169F,171C,178T,200S,203R,207T,208G
MW124056	SN_008P	Senegal	1995	SN 008	genomic DNA		subtype: CRF 02_AG	1	231	6A,14P,27I,41T,54M,58I,71D,79D,83M,91V,110N,120S,148V,169F,180D,208G,210N,225S
MW124057	SN_009P	Senegal	1995	SN 009	genomic DNA		subtype: CRF 02_AG	1	231	6A,15M,27I,41T,54M,58I,71D,79D,83A,87Q,91Y,92P,96I,116A,120G,148V,169F,178T,187D,203R,204G,208G
MW124058	SN_010P	Senegal	1995	SN 010	genomic DNA		subtype: CRF 02_AG	1	231	6A,15M,27I,41T,54M,58I,71D,79D,83A,87Q,91Y,92P,96I,116A,120G,148V,169F,178T,187D,203R,204G,208G
MW124059	SN_011P	Senegal	1995	SN 011	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,27I,54M,58I,71D,83T,92P,120S,135V,148V,169F,178T,180D,203R
MW124060	SN_012P	Senegal	1995	SN 012	genomic DNA		subtype: CRF 02_AG	1	231	6A,11A,15M,26A,27I,54M,58I,71D,79D,86I,87Q,92P,120S,148V,169F,178T,200S,203R,208G
MW124061	SN_013P	Senegal	1995	SN 013	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,27I,41T,54M,58I,71D,91N,92P,120S,135V,169F,178T,200S,207S,208G
MW124062	SN_014P	Senegal	1995	SN 014	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,12Y,14S,15M,27I,47T,54M,58I,71D,79D,83T,92Q,120S,154K,169F,178T,203R,204G,208G,225S
MW124063	SN_015P	Senegal	1995	SN 015	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14P,15M,27I,41T,54M,58I,71D,87Q,91V,92P,120S,135V,148V,169F,178T,203R,208G
MW124064	SN_016P	Senegal	1995	SN 016	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14P,27I,54M,58I,71D,92P,110N,120S,135V,148V,169F,178T,200S,203R,208G,225S
MW124065	SN_017P	Senegal	1995	SN 017	genomic DNA		subtype: CRF 02_AG	1	231	6A,14T,15L,27I,54M,58I,71D,75D,92P,120S,135V,148V,169F,178T,200S,207Q,208G,225S
MW124066	SN_018P	Senegal	1995	SN 018	genomic DNA		subtype: CRF 02_AG	1	231	3M,6A,11T,12Y,14S,15M,27I,54M,58I,71D,87Q,92P,96I,120S,135V,148V,169F,183G,200S,203R,208G
MW124067	SN_019P	Senegal	1995	SN 019	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14P,15M,26A,27I,41T,54M,58I,71D,83L,92P,110N,120S,135V,148V,169F,200S,203R,208G,225S
MW124068	SN_020P	Senegal	1995	SN 020	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,15M,27I,54M,58I,71D,92P,110N,120S,148V,169F,178T,199R,200S,203R,208G
MW124069	SN_021P	Senegal	1995	SN 021	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,15M,26A,27I,41T,54M,58I,71D,83T,91V,92P,120G,124V,135V,148V,169F,178T,180D,190M,200S,203R,208G
MW124070	SN_022P	Senegal	1995	SN 022	genomic DNA		subtype: CRF 02_AG	1	231	6A,10L,11T,14S,15L,27I,54M,58I,71D,75D,87Q,92P,115V,120S,132K,135V,136I,148V,169F,178T,208G
MW124071	SN_023P	Senegal	1995	SN 023	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,27I,54M,58I,71D,72V,92P,120S,124V,148I,154K,169F,178T,200S,208G,210S
MW124072	SN_024P	Senegal	1995	SN 024	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,27I,54M,58I,71D,92P,120S,135V,148V,169F,178T,200S,203R,208G
MW124073	SN_025P	Senegal	1995	SN 025	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,12Y,14S,15M,27I,54M,58I,71D,92P,111P,120S,148V,169F,178T,183S,199R,200S,203R,208G
MW124074	SN_026P	Senegal	1995	SN 026	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,15L,27I,50T,54M,58I,71D,75D,83L,87Q,91V,92P,96L,120S,135V,148V,169F,178T,200S,208G
MW124075	SN_027P	Senegal	1995	SN 027	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,15M,27I,31G,48A,50H,54M,58I,71D,75D,83I,92P,120S,124V,135V,148V,169F,177G,178T,203R
MW124076	SN_028P	Senegal	1995	SN 028	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14P,15M,27I,27I_QG*KL*,31K,33N,39L,42T,43F,44L,47T,48P,50P,54L,56V,58I,71D,83T,86A,92P,116A,120G,124V,135V,148V,169F,178T,188S,200S,203R,208G
MW124077	SN_029P	Senegal	1995	SN 029	genomic DNA		subtype: CRF 02_AG	1	231	6A,10P,14P,15M,27I,41T,54M,58I,71D,92P,110NT,120S,135V,148V,169F,178T,200S,203R,208G
MW124078	SN_030P	Senegal	1995	SN 030	genomic DNA		subtype: CRF 02_AG	1	231	6A,10W,11T,14S,27I,54M,58I,71D,83T,86A,87Q,92P,96L,120S,135V,148V,169F,178T,191I,200S,203R,208G,225S
MW124079	SN_031P	Senegal	1995	SN 031	genomic DNA		subtype: A3	1	231	6A,14S,15L,27I,54M,58I,71D,83I,92P,120S,124V,131R,148V,169F,171C,178T,200S,203R,207T,208G
MW124080	SN_032P	Senegal	1995	SN 032	genomic DNA		subtype: CRF 02_AG	1	231	6A,11I,14S,15M,27I,41T,54M,58I,71D,92P,120S,124V,135V,148V,169F,178T,200S,203R,208G
MW124081	SN_033P	Senegal	1995	SN 033	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,12Y,14S,15M,16T,26A,27I,36I,41T,54M,58I,71D,79D,83T,91H,92P,110N,120S,135V,148V,169F,180D,203R,208G
MW124082	SN_034P	Senegal	1995	SN 034	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,26A,41T,54M,58I,71D,83T,92P,120S,135V,148V,169F,178T,200S,203R,204G,208G
MW124083	SN_035P	Senegal	1995	SN 035	genomic DNA		subtype: CRF 02_AG	1	231	6T,15M,27I,41T,50S,54M,58I,71D,92Q,120S,148V,169F,180D,187D,200S,203R,208G,225S
MW124084	SN_036P	Senegal	1995	SN 036	genomic DNA		subtype: CRF 02_AG	1	231	6A,10L,11T,14S,15L,27I,54M,58I,71D,87Q,92P,115V,120S,132K,135V,136I,148V,169F,178T,208G
MW124085	SN_037P	Senegal	1995	SN 037	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,27I,54M,58I,71D,83A,92P,120S,135V,148V,169F,178T,203R,208G
MW124086	SN_038P	Senegal	1995	SN 038	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,27I,54M,58I,71D,92P,120S,128D,148V,169F,178T,204S,208G
MW124087	SN_039P	Senegal	1995	SN 039	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,15M,26A,27I,54M,58I,71D,79D,86I,87Q,92P,120S,148V,169F,178T,200S,203R,208G
MW124088	SN_040P	Senegal	1995	SN 040	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,15M,27I,41T,54M,58I,71D,83T,91V,92P,120S,124V,135V,148V,154K,169F,177G,178T,190M,200S,203R,208G,225S
MW124089	SN_041P	Senegal	1995	SN 041	genomic DNA		subtype: CRF 06_cpx	1	231	6A,27I,36I,41A,54M,58I,71D,79D,92P,110N,120GS,124V,132K,148V,154K,169F,171A,180D,183S,187D,207Q,208G,225S
MW124090	SN_042P	Senegal	1995	SN 042	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,27I,41T,54M,58I,71D,83T,92P,120S,124V,135V,148V,169F,171V,178T,180D,203R,208G,225S
MW124091	SN_043P	Senegal	1995	SN 043	genomic DNA		subtype: CRF 22_01A1	1	231	3I,6A,11T,15L,31G,33N,54M,58I,71D,91N,92P,116A,120S,148V,169F,178T,200S,207T,208G
MW124092	SN_044P	Senegal	1995	SN 044	genomic DNA		subtype: CRF 06_cpx	1	231	6A,14S,15M,27I,54M,58I,71D,92P,120S,135V,148V,169F,178T,200S,203R,208G,225S
MW124093	SN_045P	Senegal	1995	SN 045	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,27I,54M,58I,71D,92P,120S,135V,148V,169F,178T,200S,203R,208G
MW124094	SN_046P	Senegal	1995	SN 046	genomic DNA		subtype: A3	1	231	6A,14S,15L,27I,54M,58I,71D,92P,120S,124V,131R,148V,169F,171C,178T,200S,203R,207T,208G
MW124095	SN_047P	Senegal	1995	SN 047	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,15L,27I,54M,58I,71D,87Q,92P,111I,120S,148V,154K,169F,178T,183G,203R,208G
MW124096	SN_048P	Senegal	1995	SN 048	genomic DNA		subtype: A3	1	231	6A,14S,27I,54M,58I,71D,78I,92P,116A,120S,124V,131R,148V,169F,171C,178T,183S,200S,203R,207T,208G,225S
MW124097	SN_049P	Senegal	1995	SN 049	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,27I,54M,58I,71D,92P,120S,135V,148V,154K,169F,178T,200N,203R,208G
MW124098	SN_050P	Senegal	1995	SN 050	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,27I,54V,58I,71D,83I,92P,120S,124V,148V,169F,177G,178T,200S,208G
MW124099	SN_051P	Senegal	1995	SN 051	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,27I,54M,58I,71D,83T,92P,120S,135V,148V,154K,160S,169F,177G,178T,183K,190M,200S,203R,208G,225S
MW124100	SN_052P	Senegal	1995	SN 052	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,15M,26A,27I,41T,54M,58I,71D,92P,120S,135V,148A,152DE,154K,169F,178T,200S,203R,207S,208G
MW124101	SN_053P	Senegal	1995	SN 053	genomic DNA		subtype: A3	1	231	6A,14T,15L,27I,54M,58I,71D,80X,81~,82~,83~,84~,85~,86~,87~,88~,89~,90~,91~,92X,120S,124V,131R,148V,169F,171C,178T,200S,203R,207T,208G
MW124102	SN_054P	Senegal	1995	SN 054	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,27I,54M,58I,71D,92P,120S,135V,148V,169F,178T,190M,191I,203R,204G,208G
MW124103	SN_055P	Senegal	1995	SN 055	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,15M,27I,54M,58I,71D,92P,111P,120S,135V,148V,169F,171A,178T,180D,203R,204G,208G
MW124104	SN_056P	Senegal	1995	SN 056	genomic DNA		subtype: G	1	231	6A,71D,83L,86P,87Q,92P,96I,110S,116R,120S,148V,169F,178T,183G,203R,208G
MW124105	SN_058P	Senegal	1995	SN 058	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14P,15M,27I,41T,54M,58I,71D,83T,92P,120S,135IV,148V,169F,178T,200A,203R,208G,225S
MW124106	SN_059P	Senegal	1995	SN 059	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,27I,41T,54M,58I,71D,83T,92P,110N,120S,128Q,132G,135V,148V,169F,178T,200S,203R,208G
MW124107	SN_060P	Senegal	1995	SN 060	genomic DNA		subtype: D	1	231	6L,15L,33N,83L,110S,120S,208G
MW124108	SN_061P	Senegal	1995	SN 061	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,26A,27I,54M,58I,71D,79D,83T,92P,120S,148V,169F,178T,183G,200S,203R,208G
MW124109	SN_062P	Senegal	1995	SN 062	genomic DNA		subtype: CRF 02_AG	1	231	6A,10F,11T,15M,27I,54M,58I,71D,75DE,83A,91A,92P,120S,124V,135V,148V,154K,169F,177G,178T,200S,203R,208G
MW124110	SN_063P	Senegal	1995	SN 063	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14P,27I,54M,58I,71D,92P,110N,120S,135V,148V,169F,178T,200S,203R,208G,225S
MW124111	SN_065P	Senegal	1995	SN 065	genomic DNA		subtype: A3	1	231	6A,15V,27I,54M,58I,71D,83I,92P,120S,124V,131R,148V,169F,171C,178T,200S,203R,207T,208G
MW124112	SN_066P	Senegal	1995	SN 066	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,27I,54M,58I,71D,92P,120S,135V,148V,169F,178T,190M,191I,203R,204G,208G
MW124113	SN_067P	Senegal	1995	SN 067	genomic DNA		subtype: CRF 02_AG	1	231	6A,11I,12Y,14S,15M,27I,54M,58I,71D,92P,107S,111P,120S,135V,148V,169F,171A,178T,180D,200S,203R,204G,208G
MW124114	SN_068P	Senegal	1995	SN 068	genomic DNA		subtype: G	1	231	6A,71D,83L,86P,87Q,92P,96I,110S,116R,120S,148V,169F,178T,183G,203R,208G
MW124115	SN_069P	Senegal	1995	SN 069	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,27I,54C,58I,71D,83I,87Q,92P,96I,110N,112S,116K,120S,148V,169F,178T,200S,203R,225S
MW124116	SN_070P	Senegal	1995	SN 070	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14P,15M,27I,41T,54M,58I,71D,83T,92P,120S,148V,169F,178T,200G,203R,208G,225S
MW124117	SN_071P	Senegal	1995	SN 071	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,27I,41T,54M,58I,71D,83T,92P,110N,120S,128Q,132G,135V,148V,169F,178T,200S,203R,208G
MW124118	SN_072P	Senegal	1995	SN 072	genomic DNA		subtype: D	1	231	6L,15L,33N,83L,110S,120S,208G
MW124119	SN_073P	Senegal	1995	SN 073	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,26A,27I,54M,58I,71D,79D,83T,92P,120S,148V,169F,178T,183G,200S,203R,208G
MW124120	SN_074P	Senegal	1995	SN 074	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,27I,41T,54M,58I,71D,75D,83A,91A,92P,120S,124V,135V,148V,154K,169F,177G,178T,200S,203R,208G
MW124121	SN_075P	Senegal	1995	SN 075	genomic DNA		subtype: D	1	231	6L,27I,83L,91V,148V,154K,180D,225S
MW124122	SN_076P	Senegal	1995	SN 076	genomic DNA		subtype: A3	1	231	6A,14P,15L,27I,31G,33N,54M,58V,71D,83I,92P,110N,115V,120G,124V,128D,131R,148V,154K,169F,171C,178T,200S,203R,207S,208G,225S
MW124123	SN_077P	Senegal	1995	SN 077	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,27I,54M,58I,71D,92P,110N,120S,135V,148V,169F,178T,200S,203R,208G
MW124124	SN_078P	Senegal	1995	SN 078	genomic DNA		subtype: CRF 02_AG	1	231	6A,14T,15M,27I,54M,58I,59I,71D,83T,92P,120S,124V,128N,132G,148V,169F,178T,200S,208G
MW124125	SN_079P	Senegal	1995	SN 079	genomic DNA		subtype: A3	1	231	6A,14S,15L,27I,47T,54M,58I,71D,83M,92P,120S,124V,131R,148V,169F,171C,178T,180D,200S,203R,207T,208G
MW124126	SN_080P	Senegal	1995	SN 080	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,15M,27I,54M,58I,71D,75D,83M,87Q,92P,120S,135V,148V,169F,178T,200S,207PS,208G
MW124127	SN_081P	Senegal	1995	SN 081	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,27I,54M,58I,71D,92P,115V,120S,135V,148V,169F,171A,178T,180D,200S,203R,208G
MW124128	SN_082P	Senegal	1995	SN 082	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,15M,27I,31G,54M,58I,71D,86A,87Q,92P,96I,110N,115M,116T,120S,135V,148V,169F,177C,178T,180D,200S,203R,208G
MW124129	SN_084P	Senegal	1995	SN 084	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,15M,27I,54M,58I,63H,71D,92P,120S,135V,148V,154K,169F,178T,183G,200S,203R,208G
MW124130	SN_085P	Senegal	1995	SN 085	genomic DNA		subtype: CRF 02_AG	1	231	6A,11I,13Q_GQMIHQ,15M,27I,41T,54M,58I,71D,92P,110N,120S,135V,148V,169F,178T,200S,203R,208G,225S
MW124131	SN_086P	Senegal	1995	SN 086	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,27I,54M,58I,71D,76E_WGDTRQQCRC*KTPSMRK,92P,120S,135V,148V,161~,162~,163~,164~,165~,166~,167~,168~,169~,170~,171~,172~,173~,174~,178T,200S,203R,208G
MW124132	SN_087P	Senegal	1995	SN 087	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15M,27I,54M,58I,71D,92P,120S,135V,154K,169F,178T,200S,203R,208G
MW124133	SN_088P	Senegal	1995	SN 088	genomic DNA		subtype: A3	1	231	6A,14S,15L,27I,54M,58I,71D,92P,96I,120S,124V,131R,148V,154K,169F,171C,178T,200S,203R,208G,225S
MW124134	SN_089P	Senegal	1995	SN 089	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,26A,27I,41T,54M,58I,71D,75D,83T,91A,92P,120S,135V,148V,169F,178T,200S,203R,208G,225S
MW124135	SN_090P	Senegal	1995	SN 090	genomic DNA		subtype: CRF 02_AG	1	231	6A,14S,15L,27I,54M,58I,71D,92P,110N,120S,124V,131R,148V,154K,169F,178T,203R,208G
MW124136	SN_091P	Senegal	1995	SN 091	genomic DNA		subtype: B	1	231	6M,15L,27I,83L,116A,148V,178T
MW124137	SN_092P	Senegal	1995	SN 092	genomic DNA		subtype: A1, G	1	231	6A,14P,15L,27I,30R,54M,58I,71D,92P,110N,120G,131R,154K,169F,171C,178T,194S,200A,203R
MW124138	SN_093P	Senegal	1995	SN 093	genomic DNA		subtype: CRF 02_AG	1	231	6A,11T,14S,26A,27I,41T,54M,58I,71D,83T,91V,92P,120S,135V,148V,152G,169F,178T,190M,200S,203R,208G
MW124139	SN_094P	Senegal	1995	SN 094	genomic DNA		subtype: CRF 02_AG	1	231	6A,11I,14S,15M,27I,31G,33N,48A,50H,54M,58I,71D,92P,120S,135V,148V,169F,171A,177G,178T,200S,203R,207Q,208G
MW124140	SN_096P	Senegal	1995	SN 096	genomic DNA		subtype: A3	1	231	6A,10P,12Y,15V,27I,30R,54M,58I,71D,83I,92P,120S,124V,131R,148V,169F,171C,178T,191I,200S,203R,207T,208G
MW124226	UG_014P	Uganda	2009	PC 014	genomic DNA		subtype: A1	1	231	6A,11I,14P,15LV,27I,30R,31G,54M,58I,71D,83L,87Q,92P,96L,111P,128D,148V,154K,169F,180D,200S,203R,207S,208G
MW124227	UG_015P	Uganda	2009	PC 015	genomic DNA		subtype: A1D	1	231	6L,27I,41T,83L,87Q,91V,120S,148V,204S,225S
MW124228	UG_016P	Uganda	2009	PC 016	genomic DNA		subtype: A1	1	231	6T,12Y,14S,15V,27I,54M,58I,71D,83L,85PS,86I,111P,116A,120S,128D,148V,154K,169F,171A,178T,180D,200S,207T,208G,225S
MW124229	UG_022P	Uganda	2009	PC 022	genomic DNA		subtype: D	1	231	2V,6L,12Y,14N,15L,41T,50A,83L,91V,111P,120S,148V,180D,191I,200I,204G,207A,208G
MW124230	UG_023P	Uganda	2009	PC 023	genomic DNA		subtype: D	1	231	6L,27I,71D,83L,91N,92P,116A,120S,148V,154K,177G,180D,208G
MW124231	UG_025P	Uganda	2009	PC 025	genomic DNA		subtype: D	1	231	6L,14V,27I,30R,79D,83Q,91V,116A,120S,148V,177G,179P,180D,183S,208G,225S
MW124232	UG_026P	Uganda	2009	PC 026	genomic DNA		subtype: A1D	1	231	6A,11IV,14S,15L,27I,50G,54M,58V,71D,83Q,95H,96I,111P,115L,116A,120G,128D,148V,154K,169F,178T,183D,208S,210P,225S
MW124233	UG_047P	Uganda	2009	PC 047	genomic DNA		subtype: A1	1	231	6A,10P,11I,14S,15L,27I,48I,54M,58I,71D,77AT,79EQ,83L,86T,87Q,91F,92P,94CG,111I,120G,128D,131RT,132IR,148V,154K,169F,183G,184GW,185MR,187D,191I,200S,203R,208G,215MR,217AT,225S,228AS,229GR
MW124234	UG_049P	Uganda	2009	PC 049	genomic DNA		subtype: D	1	231	6L,14N,27I,83L,91V,110ST,120S,148V,154K,180D,225S
MW124235	UG_050P	Uganda	2009	PC 050	genomic DNA		subtype: A1	1	231	6A,11M,14G,15V,26A,27I,30R,31G,36I,54M,58I,71D,79D,83L,87Q,92P,111I,115V,120S,128D,148V,154K,169F,178T,183G,187D,191I,200S,203R,208G
MW124236	UG_051P	Uganda	2009	PC 051	genomic DNA		subtype: A1D	1	231	2V,6A,11I,14N,15L,27I,50H,54M,58I,71D,83I,91N,92P,93V,96L,111P,115L,116Q,120S,128D,148V,169F,171A,178T,183G,200S,207T,208G
MW124237	UG_053P	Uganda	2009	PC 053	genomic DNA		subtype: A1D	1	231	6L,15L,27I,36IV,41M,83L,120S,124V,148V,152E,180D,207A,208G,225S
MW124238	UG_054P	Uganda	2009	PC 054	genomic DNA		subtype: D	1	231	6M,15L,16T,27I,31N,50A,83T,91V,116A,120S,148V,180D,204S,208G
MW124239	UG_055P	Uganda	2009	PC 055	genomic DNA		subtype: A1	1	231	6A,14T,15L,27I,54M,58I,71D,83L,87Q,92P,111S,115M,116A,120S,128D,148V,153V,154K,169F,171I,178T,183G,187D,200S,203R,208G
MW124240	UG_056P	Uganda	2009	PC 056	genomic DNA		subtype: A1D	1	231	6L,14P,15L,27I,41M,83L,91N,120S,124V,148V,152E,207T,208G,216A,225S
MW124241	UG_057P	Uganda	2009	PC 057	genomic DNA		subtype: A1	1	231	6A,11I,15V,27I,30R,31G,54M,58I,71D,83L,92P,110N,111M,120S,128D,148V,153V,154K,169F,171I,178T,183G,200S,203R,207S,208G,210S
MW124242	UG_058P	Uganda	2009	PC 058	genomic DNA		subtype: D	1	231	6L,15L,27I,33N,71D,83L,91V,116A,120S,148V,154K,177G,180D,208G,210S,225S
MW124243	UG_060P	Uganda	2009	PC 060	genomic DNA		subtype: D	1	231	6L,14G,15L,27I,83L,116A,148V,199R,230I
MW124244	UG_061P	Uganda	2009	PC 061	genomic DNA		subtype: A1D	1	231	6A,15V,27I,54M,58I,71D,83L,116A,120G,128D,148V,154K,169F,178T,180D,190I,203R,225S
MW124245	UG_062P	Uganda	2009	PC 062	genomic DNA		subtype: A1D	1	231	5G,6A,11L,12P,14P,15F,27I,30R,31G,54M,58I,71D,83L,87Q,92P,111P,115V,120S,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G,225S
MW124246	UG_063P	Uganda	2009	PC 063	genomic DNA		subtype: A1	1	231	3M,6A,11I,15V,27I,30R,31G,48I,54M,58I,71D,83L,92P,112K,120G,124S,128DN,135I_W,148V,154K,169F,171C,178T,183G,200S,203R,207T,208G,210S
MW124247	UG_066P	Uganda	2009	PC 066	genomic DNA		subtype: D	1	231	6L,15L,27I,41T,83L,86A,87Q,91V,110N,120S,148V,180D,194S
MW124248	UG_067P	Uganda	2009	PC 067	genomic DNA		subtype: A1	1	231	6V,12Y,15V,30R,31G,54M,58I,71D,83L,92P,96I,111P,120G,124V,128D,148V,154K,169F,171V,177G,180D,200S,203R,208G,225S
MW124249	UG_068P	Uganda	2009	PC 068	genomic DNA		subtype: D	1	231	6L,14S,15L,24GV,26A,27I,41MR,45D,48PST,59I,65P,66X,74X,77A_Q,116A,120S,124V,148V,154K,180D,200N,203R,225A
MW124250	UG_070P	Uganda	2009	PC 070	genomic DNA		subtype: A1	1	231	6V,12Y,15V,30R,31G,54M,58I,71D,83L,92P,111P,120G,123A,124V,128D,148V,154K,169F,171V,177G,180D,200S,203R,208G,225S
MW124251	UG_071P	Uganda	2009	PC 071	genomic DNA		subtype: D	1	231	2IL,6M,15L,16T,27IV,41T,50S,79D,83LPQ,84HP,95PQ,116A,120S,148V,180D,183T,208G
MW124252	UG_095P	Uganda	2009	PC 095	genomic DNA		subtype: D	1	231	6A,11A,12Y,15L,27I,41T,83L,87P,98D,116A,120S,148V
MW124253	UG_096P	Uganda	2009	PC 096	genomic DNA		subtype: A1D	1	231	6A,11I,14AT,15M,27I,54M,58I,71D,83L,110N,116A,120S,128D,148V,154K,164F,169F,178T,199KR,203R,210S,225S
MW124254	UG_097P	Uganda	2009	PC 097	genomic DNA		subtype: A1	1	231	6A,11T,12Y,14S,15L,27I,54M,58V,71D,83L,111P,115L,116A,120G,128D,129L,131R,148V,154K,169F,171C,178T,180D,200S,203R,207A,208G
MW124255	UG_098P	Uganda	2009	PC 098	genomic DNA		subtype: A1	1	231	6A,11I,12N,14P,15L,27I,54M,58I,71D,83T,87P,91H,92P,95R,96L,98D,111I,120S,128D,148V,169F,180D,187D,203R,208G
MW124256	UG_099P	Uganda	2009	PC 099	genomic DNA		subtype: D	1	231	2V,6L,15L,27I,54V,83I,91V,120S,148V,154K,180D,208G,225S
MW124257	UG_112P	Uganda	2009	PC 112	genomic DNA		subtype: A1	1	231	6A,11M,12N,14P,15L,26A,27I,30R,36IV,54M,58V,71D,83L,92P,111P,115V,116Q,120G,128D,148V,154K,169F,180D,187D,203R,204G,207A,208G
MW124258	UG_113P	Uganda	2009	PC 113	genomic DNA		subtype: A1	1	231	6A,11I,12Y,15L,27I,30R,31G,48A,54M,58I,59I,71D,78I,83L,87Q,88V,91F,92P,111P,116A,117RW,120G,128D,148V,154K,169F,178T,180D,187D,200S,203R,207S,208G
MW124259	UG_114P	Uganda	2009	PC 114	genomic DNA		subtype: A1D	1	231	6L,27I,83I,87Q,91IV,120S,148V,180D,208G
MW124260	UG_116P	Uganda	2009	PC 116	genomic DNA		subtype: A1	1	231	6A,14P,15L,27I,30R,54M,58I,71D,83L,86IV,111P,116A,120G,128D,148V,154K,169F,180D,183G,200S,203R,207A,208G
MW124262	UG_118P	Uganda	2009	PC 118	genomic DNA		subtype: A1	1	231	6A,11I,12L,14T,15L,27I,30R,54M,58I,71D,83L,91V,111P,115L,116A,120S,128D,148V,154K,169F,180D,183G,187D,200S,203R,207A,208G,225S,230I
MW124263	UG_123P	Uganda	2009	PC 123	genomic DNA		subtype: D	1	231	4R,6L,10L,14S,15L,27I,33N,41T,54IV,83T,91V,116D,120S,135IV,148V,180D,208G,225S
MW124264	UG_125P	Uganda	2009	PC 125	genomic DNA		subtype: D	1	231	6L,15L,27I,41T,83L,116A,120S,148V,154K,172IL,180D,225S
MW124265	UG_132P	Uganda	2009	PC 132	genomic DNA		subtype: A1	1	231	2V,6A,11I,14P,15L,26A,30R,31G,54M,58I,71D,79D,92P,110N,111I,120S,148V,153V,154K,169F,171V,172F,178T,183G,200S,203R,207S,208G,210S
MW124266	UG_148P	Uganda	2009	PC 148	genomic DNA		subtype: A1	1	231	6A,11M,14G,16T,26A,27I,30R,31G,54M,58V,71D,83L,86M,87Q,91L,96I,98D,111P,115V,116V,120G,128D,148V,154K,169F,178T,180D,187D,191I,200S,203R,208G
MW124267	UG_149P	Uganda	2009	PC 149	genomic DNA		subtype: D	1	231	6L,27I,41T,83L,91N,96I,116T,120S,148V,180D
MW124268	UG_150P	Uganda	2009	PC 150	genomic DNA		subtype: A1D	1	231	6A,11IT,12Y,15L,16ST,27I,41T,83L,91N,92P,110N,116A,120G,123A,148V,178T,208G,225S
MW124269	UG_151P	Uganda	2009	PC 151	genomic DNA		subtype: A1	1	231	6A,11I,14S,15V,27I,54M,58I,71D,83L,96I,111I,116A,120G,128D,148V,153V,154K,169F,171I,178T,183G,187D,200S,203R,208G
MW124270	UG_163P	Uganda	2009	PC 163	genomic DNA		subtype: D	1	231	6L,27I,41T,83L,115V,120S,148V,180D
MW124271	UG_164P	Uganda	2009	PC 164	genomic DNA		subtype: A1	1	231	6V,11I,14P,15L,27I,31G,33N,54M,58I,71D,83L,91V,110N,111T,116A,120GS,128D,148V,154K,169F,171A,178T,183G,200S,203R,207S,208G,225S
MW124272	UG_165P	Uganda	2009	PC 165	genomic DNA		subtype: D	1	231	6L,27I,50S,83L,91N,96LM,110N,120S,148V,180D,225S
MW124273	UG_166P	Uganda	2009	PC 166	genomic DNA		subtype: D	1	231	6L,15L,27I,30R,31G,33N,41A,54A,79D,83Q,91IN,110N,116A,120GS,128D,148V,154K,177C,180D,225S
MW124274	UG_167P	Uganda	2009	PC 167	genomic DNA		subtype: A1D	1	231	6L,27I,75D,83L,91V,116A,120S,148V,171V,180D,183S,225S
MW124275	UG_168P	Uganda	2009	PC 168	genomic DNA		subtype: D	1	231	6L,11I,27I,41A,68I,72A,83L,115V,116A,120S,124V,132K,136I,140R,143K,148V,180D,191I,203R,208G
MW124276	UG_170P	Uganda	2009	PC 170	genomic DNA		subtype: D	1	231	6L,27I,41T,83L,91V,116A,120G,124V,148V,180D,225S
MW124277	UG_171P	Uganda	2009	PC 171	genomic DNA		subtype: D	1	231	6L,27I,83L,116A,120S,148V,180D,225S
MW124278	UG_172P	Uganda	2009	PC 172	genomic DNA		subtype: D	1	231	6L,27I,83L,148V,180D,225S
MW124279	UG_173P	Uganda	2009	PC 173	genomic DNA		subtype: A1	1	231	6A,11I,15L,27I,30R,31G,54M,58I,71D,83L,92P,111P,128D,148V,153V,154K,169F,178T,183G,200S,203KR,207T,208G
MW124280	UG_174P	Uganda	2009	PC 174	genomic DNA		subtype: A1	1	231	3I,6A,11M,15L,26A,27I,30R,31G,50G,54M,58I,71D,83L,86A,91V,92Q,111P,120G,128D,148V,154K,169F,180D,188S,200S,203R,207S,208G,225S
MW124281	UG_175P	Uganda	2009	PC 175	genomic DNA		subtype: A1D	1	231	6L,14P,15L,16T,27I,31N,41T,59I,83L,86I,110N,120S,148V,180D,208G,210S
MW124282	UG_176P	Uganda	2009	PC 176	genomic DNA		subtype: A1	1	231	6A,10A,11I,12Y,14S,15L,27I,31G,33N,54M,58I,71D,86T,87Q,96I,111P,116A,120G,148V,154K,169F,178T,180A,183NS,200S,203R,207AT,208G
MW124283	UG_177P	Uganda	2009	PC 177	genomic DNA		subtype: A1	1	231	4T,6A,11I,15L,27I,30R,31G,41T,50G,58I,71D,83L,87Q,92P,96I,111T,116A,120H,128D,141V,148V,154K,169F,178T,181I,183G,187D,200A,203R,207S,208G,210S,211I,225S
MW124284	UG_178P	Uganda	2009	PC 178	genomic DNA		subtype: D	1	231	6A,11I,14P,27I,41T,71D,83L,110N,115M,116A,120G,148V,180D,203R,225S
MW124286	UG_181P	Uganda	2009	PC 181	genomic DNA		subtype: D	1	231	6L,15L,27I,31AS,83L,115V,116A,120S,148V,178ST,180DE,208AG,225S
MW124287	UG_182P	Uganda	2009	PC 182	genomic DNA		subtype: D	1	231	6L,27I,41T,83L,91Q,115V,116A,120S,148V,180D,225S
MW124288	UG_183P	Uganda	2009	PC 183	genomic DNA		subtype: D	1	231	2V,6L,14P,15M,27I,41T,50S,59I,83L,87Q,91A,93A,96L,110N,116A,120H,148V,180D,208G,210S,225S
MW124289	UG_185P	Uganda	2009	PC 185	genomic DNA		subtype: D	1	231	6L,27I,41T,83L,91N,115V,120S,148V,154K,180D
MW124290	UG_186P	Uganda	2009	PC 186	genomic DNA		subtype: D	1	231	6V,27I,83L,91P,96L,116A,123A,148V,154K,180D,225S
MW124292	UG_188P	Uganda	2009	PC 188	genomic DNA		subtype: A1	1	231	6P,12Y,16T,27I,33N,54M,58V,71D,83L,86T,87Q,96I,98D,111P,116A,120G,128D,148V,153V,154K,169F,171I,178T,183G,204G,207T,208G,225S
MW124293	UG_190P	Uganda	2009	PC 190	genomic DNA		subtype: D	1	231	6L,27I,41T,83L,87P,91V,120S,148V,180D,194S,208G,230IMV
MW124294	UG_191P	Uganda	2009	PC 191	genomic DNA		subtype: D	1	231	6L,14P,16A,27I,41T,71D,83L,116E,135V,148V,170R,180D,183T,208G
MW124295	UG_192P	Uganda	2009	PC 192	genomic DNA		subtype: D	1	231	6L,14P,15L,27I,41I,83L,110N,120S,124T,135V,148V,154K,225S
MW124296	UG_193P	Uganda	2009	PC 193	genomic DNA		subtype: D	1	231	6L,14N,27I,54M,58I,72V,83L,91A,120S,123A,148V,154K,180D,208G,225S
MW124297	UG_232P	Uganda	2009	PC 232	genomic DNA		subtype: A1	1	231	6A,9H,11T,15F,27I,30R,31G,54M,58I,71D,83L,86A,87Q,91V,92Q,93A,98D,111T,120G,139H,148V,154K,169F,175K,178T,180D,203R,204G,207A,208G
MW124298	UG_233P	Uganda	2009	PC 233	genomic DNA		subtype: A1	1	231	6A,11I,15V,27I,54M,58I,59I,71D,83L,87Q,92P,96L,111P,118I,120G,148V,154K,169F,178T,180D,200L,203R,204G,207T,208G,210S
MW124299	UG_235P	Uganda	2009	PC 235	genomic DNA		subtype: A1	1	231	2V,6A,11I,15L,26A,30R,31G,54M,58I,59I,71D,79D,83T,92P,111I,120G,148V,153V,154K,169F,171I,178T,183G,200S,203R,208G,225S
MW124300	UG_239P	Uganda	2009	PC 239	genomic DNA		subtype: A1	1	231	2V,6A,11I,12Y,15L,33N,54M,58V,70R,83L,87Q,92P,96I,107I,108S,110S,111V,115V,120S,128D,131R,148V,154K,171V,180D