Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Pujol-Hodge (2022)	Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa	Viruses 14 (8), 1673 (2022)	8.37e-171	547

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Accession	IsolateName	Country	Coll Date	Clone	MolType	Source	Note	FirstAA	LastAA	MutList
ON502062	SEARCH_001_gag	Kenya	2013		genomic DNA			1	231	6A,11I,12L,14T,15L,30R,31G,54M,58I,59I,71D,83L,87Q,92P,111P,115M,120S,124V,128D,148V,154K,169F,178T,180D,183H,200S,203R,207S,208G,210S
ON501741	SEARCH_002_gag	Uganda	2013		genomic DNA			1	231	6L,14P,27I,54V,77I,79D,83T,91A,107S,120S,148V,170R,180D,203R,208G,210S
ON501729	SEARCH_003_gag	Uganda	2013		genomic DNA			1	231	6L,27I,31G,33N,41T,59I,61*,83L,87Q,96I,102G,116T,120S,148V,180D,183T,208G
ON502111	SEARCH_004_gag		2013/2017		genomic DNA	Uganda/Kenya		1	231	2V,5T,6A,11I,14N,15L,27I,54M,58V,71D,83L,111P,116A,120G,123G,128D,131R,148V,152E,154K,169F,171V,178T,191I,200S,207T,208G,225S
ON501621	SEARCH_005_gag	Uganda	2013		genomic DNA			1	231	6L,14T,15L,27I,83L,87Q,91N,92P,98D,116A,120G,123A,148V,225S
ON501810	SEARCH_010_gag	Uganda	2013		genomic DNA			1	231	2V,6A,9H,11I,15L,27I,31G,35EK,50F,54M,58I,60GR,68IM,71D,78V,79EK,83L,91V,111P,120S,128D,143KR,148V,154K,169F,178T,183S,200S,207S,208G,212EK,225S
ON501991	SEARCH_011_gag	Kenya	2013		genomic DNA			1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120S,121T,128D,148V,154K,169F,178T,183G,191I,200S,203R,207T,208G
ON502041	SEARCH_013_gag	Kenya	2013		genomic DNA			1	231	6A,10W,11I,12P,14S,15L,23*W,27I,29D,31G,33N,54M,58I,71D,80*,83L,87Q,92P,96L,111P,120G,128D,137GR,148V,154K,169F,178T,183G,200S,203R,206GR,207T,208G,210S,229KR
ON502058	SEARCH_015_gag	Kenya	2013		genomic DNA			1	231	6A,10W,14P,15IM,17A,29DE,33NS,41AS,83L,110N,116A,120S,148V,154K,187D,208AG,225A
ON501943	SEARCH_016_gag	Uganda	2017		genomic DNA			1	231	6A,27I,31G,41A,50A,54M,58I,71D,83L,92P,111T,128D,132K,148V,169F,171A,178T,183S,200A,207S,208G,209P
ON501849	SEARCH_019_gag	Uganda	2017		genomic DNA			1	231	6L,15L,45*E,50G,59I,83L,91A,116A,120S,128D,148V,178T,230I
ON502046	SEARCH_020_gag	Kenya	2013		genomic DNA			1	231	6P,15V,27I,54M,58I,71D,91V,92P,96I,111I,115V,116Q,120G,128D,148V,154K,169F,171V,178T,180D,191I,203R,207T,208G,225S
ON502100	SEARCH_021_gag	Kenya	2016		genomic DNA			1	231	6A,11I,12Y,13N,15M,30R,31G,54M,58I,83L,87Q,92P,96I,111P,116A,120S,148V,154K,169F,171A,178T,183G,203R,204G,207S,208G,225S
ON502127	SEARCH_022_gag	Kenya	2016		genomic DNA			1	231	6L,15L,27I,41T,83L,91N,96I,116A,148V,178T,199R
ON502112	SEARCH_023_gag	Kenya	2016		genomic DNA			1	231	6A,14S,15L,27I,48AT,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,183G,200S,203R,208G
ON501701	SEARCH_024_gag	Uganda	2013		genomic DNA			1	231	6A,9H,13S,14P,15L,27I,31G,48I,54L,58I,71D,83L,86A,87Q,91F,92P,111P,120G,128D,148V,154K,169F,178T,180D,187D,200N,203R,208G,210S
ON501972	SEARCH_025_gag	Kenya	2013		genomic DNA			1	231	6A,11M,14N,15L,26A,27I,45DE,50H,54M,58V,71D,83AT,92P,111P,120S,128D,148V,153V,154K,169F,171I,180D,187D,191IV,203R,204G,208G,210ST,225S
ON501743	SEARCH_026_gag	Uganda	2014		genomic DNA			1	231	6A,14T,15L,27I,47C,54M,58I,71D,92P,111I,120S,124V,128D,148V,154K,169F,178T,180D,200S,203R,207A,208G,210S
ON501746	SEARCH_027_gag	Uganda	2013		genomic DNA			1	231	6A,11I,13S,14P,15L,16T,27I,48I,50G,54M,58V,71D,91V,111T,116A,120G,131R,148V,169F,200S,207V,208G
ON501692	SEARCH_028_gag	Uganda	2013		genomic DNA			1	231	6A,11M,15L,26A,27I,30R,31G,52I,54M,56M,58I,71D,83I,92Q,96L,111V,115M,120S,128D,148V,154K,169F,178T,180D,200S,203R,207S,208G,225A
ON502006	SEARCH_029_gag	Kenya	2013		genomic DNA			1	231	6A,11I,12L,14T,15L,27I,31G,54M,58I,71D,83L,92P,111P,115L,116A,120G,123A,124V,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G,225S
ON502139	SEARCH_031_gag	Kenya	2017		genomic DNA			1	231	6A,11M,27I,30R,31G,54M,58I,71D,83L,87Q,92P,111P,120S,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G,225S
ON501925	SEARCH_033_gag	Uganda	2017		genomic DNA			1	231	2V,6L,27I,50G,83L,86P,87Q,91V,120S,148V,180D,225S
ON502060	SEARCH_034_gag	Kenya	2013		genomic DNA			1	231	6L,15L,27I,83L,91V,148V,180D,208G
ON501915	SEARCH_035_gag	Uganda	2016		genomic DNA			1	231	6A,15L,27I,30R,31G,54M,58I,71D,79D,83L,87Q,92P,96L,111P,148V,154K,169F,178T,183G,191I,200S,207S,208G,210S
ON502044	SEARCH_036_gag	Kenya	2013		genomic DNA			1	231	6A,15V,27I,54M,58I,71D,83T,92P,111I,120S,128D,148V,154K,169F,178T,183G,191I,203R,208G
ON501694	SEARCH_037_gag	Uganda	2013		genomic DNA			1	231	6L,15L,58A,91N,98D,120S,148V,154K,178T,180D,210S
ON501835	SEARCH_038_gag	Uganda	2016		genomic DNA			1	231	3I,6AV,11IV,14N,15L,26A,27I,30R,31G,54M,58I,71D,83L,87Q,91F,92P,93AP,96L,111P,116A,120H,128D,148V,154K,160PS,169F,171V,178T,180D,183R,187D,191I,200S,207S,208G,225S
ON501737	SEARCH_039_gag	Uganda	2013		genomic DNA			1	231	6A,11I,12Y,14G,15V,27I,30R,54M,58I,71D,83T,87Q,92P,96L,107S,111P,120G,128D,148V,154K,169F,171A,178T,183G,191I,200S,207T,208G,210S
ON502129	SEARCH_041_gag	Kenya	2016		genomic DNA			1	231	6A,11I,27I,30R,54M,58I,71D,83L,87Q,92P,111P,120G,128D,148V,169F,178T,183G,191I,200S,203R,207A,208G
ON501860	SEARCH_042_gag	Uganda	2017		genomic DNA			1	231	6A,11I,12Y,14P,15L,29D,31G,33C,54M,58V,71D,83L,87Q,91N,92Q,94N,96L,110N,111V,115V,120G,128D,131R,148V,154K,169F,178T,180D,200S,203R,208G,210S
ON502162	SEARCH_043_gag	Kenya	2016		genomic DNA			1	231	6A,11I,14S,15L,27I,29EK,54M,58I,71D,79EK,83L,87Q,92P,96L,111P,120G,128D,148V,154K,160PS,169F,171C,175EK,178T,183G,200S,203R,207T,208G,222EG
ON501757	SEARCH_045_gag	Uganda	2013		genomic DNA			1	231	6A,11I,12Y,15L,27I,33N,54M,58V,71D,83T,91V,92P,111V,115V,120S,131R,148V,154K,169F,178T,180D,203R,208G
ON502138	SEARCH_046_gag	Kenya	2017		genomic DNA			1	231	2V,6A,11I,12Y,15L,27I,29D,31S,41T,71D,83L,87Q,92P,96L,110N,120S,148V,169F,178T,187D,200S,203R,208G,225S
ON502149	SEARCH_047_gag	Kenya	2017		genomic DNA			1	231	6A,11T,14P,15L,27I,31N,41T,50G,54M,58I,71D,83L,92P,96L,111P,115L,116Q,120G,128D,143KR,148V,154K,169F,178T,180EK,183G,191I,200V,203R,204G,207A,208G,210S,225S
ON501684	SEARCH_048_gag	Uganda	2013		genomic DNA			1	231	6L,14P,27I,41T,83L,86A,87Q,91L,96I,102G,116Q,120G,148V,170R,180D,210S,225S
ON502033	SEARCH_049_gag	Kenya	2013		genomic DNA			1	231	6A,10P,11I,15M,27I,50G,54M,58I,59I,68I,71D,83L,92P,111P,120S,128N,132G,141V,148V,154K,169F,178T,180D,187D,200S,203R,208G
ON501691	SEARCH_050_gag	Uganda	2013		genomic DNA			1	231	6A,11I,14S,15L,27I,54M,58I,71D,111P,115V,116A,120G,128D,148V,154K,169F,180D,187D,200S,203R,208G,210S,225S
ON502049	SEARCH_051_gag	Kenya	2013		genomic DNA			1	231	2L,6L,15L,27I,41T,83M,86P,87Q,91V,96L,98D,120S,148V,178T,200N,208G
ON502097	SEARCH_052_gag	Kenya	2015		genomic DNA			1	231	6A,14P,15L,27I,54M,58I,71D,83L,92P,111P,120G,128D,148V,154K,169F,178T,180D,187D,200S,203R,208G,225S,230I
ON501770	SEARCH_053_gag	Uganda	2013		genomic DNA			1	231	6L,15L,27I,33N,83L,87Q,91V,120S,148V,180D,225S
ON501796	SEARCH_054_gag	Uganda	2013		genomic DNA			1	231	6A,11I,14S,15L,17A,27I,30R,54M,58I,71D,83L,86I,87Q,92P,111P,120S,128D,148V,154K,169F,178T,183G,200S,203R,207T,208G
ON502059	SEARCH_055_gag	Kenya	2013		genomic DNA			1	231	6A,27I,41T,50H,54A,71D,91V,92P,120S,124V,148V,154K,169F,178T,187D,200S,203R,208G,225S
ON501897	SEARCH_056_gag	Uganda	2017		genomic DNA			1	231	6A,15V,27I,54M,58I,71D,83L,92P,111M,120S,128D,148V,154K,169F,178T,183G,187D,203R,208G
ON502118	SEARCH_057_gag	Kenya	2016		genomic DNA			1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,183G,200S,203R,207T,208G,225S,230I
ON501850	SEARCH_059_gag	Uganda	2017		genomic DNA			1	231	6A,11A,12Y,14V,15M,27I,54M,58I,71D,83L,91V,111P,116A,118I,120G,128D,148V,154K,169F,171C,178T,183G,200S,203R,207S,208G,210S
ON501779	SEARCH_060_gag	Uganda	2013		genomic DNA			1	231	2V,6A,11IV,12F,14G,15M,27I,30R,31G,36I,44A,50H,54M,58I,71D,87Q,91N,92P,94N,96I,111P,112P,115V,116A,120G,148V,153V,154K,169F,178T,183G,200S,203R,207S,208G,210S
ON502053	SEARCH_062_gag	Kenya	2013		genomic DNA			1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,183NS,191I,200S,203R,208G,210S
ON502054	SEARCH_063_gag	Kenya	2013		genomic DNA			1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,187D,191I,200S,207S,208G
ON501716	SEARCH_064_gag	Uganda	2013		genomic DNA			1	231	6L,27I,31G,41T,71D,83L,91V,115IV,116Q,120S,126IV,128D,148V,154K,169F,177C,178T,180D,187D,207ST,208G
ON501953	SEARCH_066_gag	Kenya	2013		genomic DNA			1	231	6L,14H,15M,27I,31G,33N,41T,71D,83L,87Q,91V,96I,98D,110N,116A,148V,154K,169F,178T,180D,187D,203R,208G,225S
ON501855	SEARCH_069_gag	Uganda	2017		genomic DNA			1	231	6L,27I,83L,91A,120G,148V,180D,225S
ON502061	SEARCH_070_gag	Kenya	2013		genomic DNA			1	231	6A,14P,15L,27I,29D,54M,58V,71D,83L,91A,92P,111P,120G,128D,148V,154K,169F,178T,187D,201L,208G
ON501777	SEARCH_073_gag	Uganda	2013		genomic DNA			1	231	6A,11I,12F,15L,16T,27I,31G,33N,54M,58I,71D,83L,91IV,111P,115V,116A,120G,128D,148V,154K,169F,171C,178T,180DE,187D,200A,203R,207T,208G,225S
ON502137	SEARCH_075_gag	Kenya	2017		genomic DNA			1	231	6A,14S,27I,41T,50G,54M,58I,83L,87Q,92P,96L,107A,111P,115L,116Q,120G,128D,148V,169F,171A,178T,183S,203R,204G,207T,208G
ON501788	SEARCH_078_gag	Uganda	2013		genomic DNA			1	231	6L,13N,14P,15L,41T,71D,87Q,91V,116A,120G,128D,136M,148V,154K,169F,178T,180D,187D,200N,203R,208G,210S,225S
ON501710	SEARCH_079_gag	Uganda	2013		genomic DNA			1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111M,120S,128D,148V,154K,169F,171A,178T,180D,187D,200S,207PT,208G,213EK
ON501682	SEARCH_081_gag	Uganda	2013		genomic DNA			1	231	6L,14AS,15L,83L,91IV,115IV,116A,120S,136FL,148V,178ST,183GRS,203KR,225GS,230I
ON501940	SEARCH_082_gag	Uganda	2017		genomic DNA			1	231	6A,15V,27I,30R,54M,58I,71D,83T,87Q,96L,98D,120G,128D,131R,148V,154K,169F,180D,183G,191I,200G,203R,207A,208G,210S,225S
ON501670	SEARCH_083_gag	Uganda	2013		genomic DNA			1	231	6A,9G,15L,27I,50S,54M,58V,71D,83L,91F,92P,111I,128D,131R,148V,154K,169F,171V,180D,200S,207M,208G
ON501971	SEARCH_085_gag	Kenya	2013		genomic DNA			1	231	6A,54M,58I,71D,83M,92P,120S,124V,148V,169F,178T,187D,200S,208G
ON501919	SEARCH_087_gag	Uganda	2017		genomic DNA			1	231	6A,9H,13S,14P,15L,26A,27I,30R,31G,54M,58I,83L,86A,91M,92Q,107I,111T,113D,116A,120S,128D,148V,154K,169F,171A,178T,183S,200S,203R,207A,208G
ON501899	SEARCH_088_gag	Uganda	2017		genomic DNA			1	231	3L,6A,11T,12Y,14C,15L,27I,83L,91N,92P,148V,180D,207A,208G,225S
ON501665	SEARCH_089_gag	Uganda	2013		genomic DNA			1	231	6L,15L,27I,41T,83L,91V,96L,116A,120H,148V,154K,180D,208G,225S
ON501963	SEARCH_090_gag	Kenya	2013		genomic DNA			1	231	6A,14N,15L,27I,31G,50T,54M,58I,83L,87Q,92P,96L,98D,111P,128D,148V,154K,169F,178T,183G,187EG,200S,203R,207T,208G,225S
ON501833	SEARCH_091_gag	Uganda	2016		genomic DNA			1	231	6L,14S,15L,31G,33N,41T,71D,91A,116A,120S,124V,148V,154K,169F,180D,187D,203R,208G
ON502055	SEARCH_092_gag	Kenya	2013		genomic DNA			1	231	2V,6A,14N,15L,27I,29D,31G,33N,41A,54M,58I,59I,83L,92P,111P,115V,120S,128D,132K,148V,154K,169F,171V,178T,191I,200S,203R,207T,208G,225S
ON502002	SEARCH_093_gag	Kenya	2013		genomic DNA			1	231	6A,11M,14G,15L,27I,31G,45D,48L,50V,54M,58I,71D,81N,83L,87Q,92P,96L,111T,118T,120G,128D,148V,154K,169F,178T,183G,200S,203R,207T,208G
ON502117	SEARCH_094_gag	Kenya	2016		genomic DNA			1	231	6A,14N,15L,27I,54M,58I,83L,92P,96L,111P,120A,128D,148V,154K,169F,171V,178T,183G,191I,203R,207T,208G,225S
ON501950	SEARCH_095_gag	Kenya	2013		genomic DNA			1	231	6A,11I,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,120S,128D,148V,154K,169F,178T,180D,200P,203R,207T,208G,225S
ON501962	SEARCH_096_gag	Kenya	2013		genomic DNA			1	231	6A,11I,14S,15L,26A,27I,31G,36I,41T,52Y,54M,58I,71D,111V,116A,120G,128D,131R,148V,154K,169F,178T,180D,200S,203R,207A,208G
ON501795	SEARCH_098_gag	Uganda	2013		genomic DNA			1	231	6M,27I,41T,50G,80*W,83LQ,86P,87Q,91V,96L,98D,116A,120A,124V,135V,148V,171V,180D,187DE,208G,220GR,229KR
ON502052	SEARCH_100_gag	Kenya	2013		genomic DNA			1	231	6A,15V,27I,58I,71D,83L,87Q,96I,111P,115V,116A,120G,128D,148V,154K,169F,171A,178T,183G,200S,203R,207A,208G
ON501727	SEARCH_102_gag	Uganda	2016		genomic DNA			1	231	6L,14P,15L,16T,27I,41T,75D,78S,83L,91V,96I,116T,120S,128D,136LM,148V,154K,169F,171A,178T,180D,207A,208G,225S
ON501798	SEARCH_103_gag	Uganda	2013		genomic DNA			1	231	2V,6A,11I,12Y,15L,26A,27I,30R,31G,36I,54M,58I,77I,83L,87Q,91V,95H,96I,107A,111P,115V,116A,120G,123A,148V,154K,169F,171A,178T,180D,183V,187D,200S,203R,207T,208G,225S
ON501624	SEARCH_104_gag	Uganda	2014		genomic DNA			1	231	2V,6A,11I,15L,26A,30R,31G,54M,58I,68I,71D,79D,83L,92P,111P,120G,123A,148V,169F,180D,183G,200A,203R,207S,208G,230I
ON502069	SEARCH_106_gag	Kenya	2015		genomic DNA			1	231	6A,54M,58I,71D,92P,110N,120S,148V,169F,170R,178T,187D,199R,200S,208G,225S
ON501970	SEARCH_107_gag	Kenya	2013		genomic DNA			1	231	2V,6V,11I,12Y,14N,15M,26A,27I,30R,31G,54M,58I,71D,83L,92P,111P,120S,128D,148V,153V,154K,169F,178T,183G,191I,200S,203R,207S,208G,210S,225S
ON501868	SEARCH_111_gag	Uganda	2016		genomic DNA			1	231	6A,11I,15V,27I,50A,58I,71D,79D,83L,87Q,96I,111P,115V,116A,120G,128D,148V,154K,169F,178R,200S,203R,207S,208G,225S
ON502047	SEARCH_112_gag	Kenya	2013		genomic DNA			1	231	2V,6A,15L,27I,54M,58V,71D,83L,87Q,92P,96I,111I,116A,120G,128D,129L,131R,136M,148V,154K,169F,171C,177C,178T,183G,187D,191I,200S,207T,208G,225S
ON501944	SEARCH_113_gag	Uganda	2017		genomic DNA			1	231	6A,11I,15L,31G,54M,58I,71D,83L,92P,111P,120G,128D,148V,154K,169F,178T,183G,200S,203R,207A,208G
ON502160	SEARCH_114_gag	Kenya	2017		genomic DNA			1	231	2V,6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,96L,111P,120G,128D,148V,154K,169F,178T,183G,191I,203R,207A,208G
ON502015	SEARCH_115_gag	Kenya	2013		genomic DNA			1	231	6A,9I,11I,15L,16A,27I,31G,50Y,54M,58V,71D,110S,111T,118I,120S,128D,131R,136M,141IL,148V,154K,169F,171I,172LP,178T,200S,203R,208G,225S
ON501866	SEARCH_116_gag	Uganda	2017		genomic DNA			1	231	6A,11I,27I,54M,58I,71D,83L,92P,96I,111T,116A,120G,123S,128D,148V,154K,169F,178T,183H,191I,200S,203R,207A,208G
ON501986	SEARCH_118_gag	Kenya	2013		genomic DNA			1	231	6A,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,121T,128D,148V,154K,163E,169F,180D,200S,203R,207A,208G
ON501632	SEARCH_120_gag	Uganda	2013		genomic DNA			1	231	6L,15L,27I,41T,83L,91V,96L,116A,124V,148V,180D,207Q,208G
ON501790	SEARCH_121_gag	Uganda	2013		genomic DNA			1	231	6A,11I,12L,14N,15L,27I,54M,58I,68I,71D,79D,83L,92P,111P,115L,120S,128D,131R,148V,154K,169F,178T,180D,200S,203R,207T,208G,210S
ON501976	SEARCH_122_gag	Kenya	2013		genomic DNA			1	231	6L,27I,36I,41T,71D,83L,91V,110N,116T,120S,124V,128D,148V,154K,169F,180D,187D,203R,208G,225S
ON501785	SEARCH_123_gag	Uganda	2013		genomic DNA			1	231	6A,10W,14V,15V,27I,31AV,36I,58I,75D,77AITV,79D,83LS,91V,96L,111I,120S,148V,154K,169F,171I,180D,187D,200S,203R,208G,225S
ON502148	SEARCH_126_gag	Kenya	2017		genomic DNA			1	231	6A,9H,10W,11I,14P,15M,17A,33N,71D,83L,91V,96I,110N,116A,120S,148V,187D,200S,208G,225S
ON501666	SEARCH_127_gag	Uganda	2013		genomic DNA			1	231	6A,11I,15V,27I,50T,54M,58I,71D,83L,96I,110N,111T,116A,120G,128D,148V,154K,169F,180D,191I,200S,203R,207A,208G
ON502067	SEARCH_128_gag	Kenya	2014		genomic DNA			1	231	6L,27I,29*E,91V,116N,120G,128D,148V,154K,171V,180D,183Q
ON501673	SEARCH_129_gag	Uganda	2013		genomic DNA			1	231	6A,12Y,14G,15V,27I,30R,54M,58I,71D,83L,87Q,92P,96L,111P,120G,128D,148V,154K,169F,171A,178T,183G,191I,200S,207T,208G,210S
ON501813	SEARCH_130_gag	Uganda	2013		genomic DNA			1	231	2V,6A,11I,13S,14P,15F,27I,30R,31G,48A,54M,58I,83L,87Q,92P,96L,111P,120G,128D,148V,154K,169F,171V,178T,180D,200S,203R,208G,225S
ON501994	SEARCH_132_gag	Kenya	2013		genomic DNA			1	231	6A,11I,27I,31G,33N,54M,58I,71D,83L,87Q,111P,120H,128D,148V,154K,169F,171V,178T,183G,187D,200S,203R,207S,208G
ON501920	SEARCH_134_gag	Uganda	2016		genomic DNA			1	231	6L,15L,27I,41T,83L,86I,91P,96L,110N,116A,124V,148V,180D,208G
ON501659	SEARCH_135_gag	Uganda	2013		genomic DNA			1	231	6A,11I,12F,15L,27I,54M,58V,71D,83L,92P,111P,120S,128D,148V,154K,169F,171V,178T,183G,191I,207T,208G,225S
ON501744	SEARCH_136_gag	Uganda	2013		genomic DNA			1	231	6A,11T,12F,15L,27I,54M,58V,71D,83L,92P,111P,120S,128D,148V,154K,169F,171V,178T,183G,191I,207T,208G,225S
ON501929	SEARCH_137_gag	Uganda	2016		genomic DNA			1	231	6L,11I,14T,15L,27I,41T,50G,83L,87Q,91V,96I,116T,120S,124V,148V,180D,203R,208Q,225S
ON501712	SEARCH_138_gag	Uganda	2013		genomic DNA			1	231	6A,11I,15L,27I,30R,31G,47T,54M,58I,59I,71D,83L,87Q,91V,92Q,96IL,111I,116A,120H,128D,129L,148V,154K,169F,178ST,180D,200S,203R,207A,208G
ON501762	SEARCH_139_gag	Uganda	2013		genomic DNA			1	231	6A,10P,11I,14S,15L,27I,41T,54M,58I,71D,83L,91V,110N,111I,115V,116A,120GS,128D,148V,169F,171C,180D,187D,199R,200S,207T,208G
ON501996	SEARCH_140_gag	Kenya	2013		genomic DNA			1	231	6A,10P,11I,15L,16T,22S,27I,54M,58V,71D,83L,92P,96I,111T,116A,120G,128D,148V,154K,169F,178T,183G,207T,208G
ON501979	SEARCH_141_gag	Kenya	2013		genomic DNA			1	231	6A,11I,12Y,14S,15L,27I,54M,58I,71D,83L,86A,87Q,91L,92P,96L,98D,100S,110N,111A,115L,116R,120G,128D,148V,154K,169F,171V,178T,183G,203R,207S,208G,225S
ON501947	SEARCH_142_gag	Uganda	2017		genomic DNA			1	231	6A,10A,12F,15L,27I,30R,31G,54M,58I,71D,83L,92P,96I,110N,111T,116A,120G,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G
ON502025	SEARCH_143_gag	Kenya	2013		genomic DNA			1	231	3M,6A,11T,14P,15L,27I,48I,54M,58V,71D,83L,92P,107V,111P,120S,128D,131R,132K,136M,146C,148V,154K,169F,191I,207G,208G
ON502066	SEARCH_144_gag	Kenya	2013		genomic DNA			1	231	6L,15L,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,203R,225S
ON502107	SEARCH_148_gag	Kenya	2016		genomic DNA			1	231	6L,16T,27I,75D,83L,86P,87Q,91V,96I,110N,116T,120S,148V,180D,208Q
ON501933	SEARCH_152_gag	Uganda	2016		genomic DNA			1	231	6L,27I,41T,83L,87Q,96I,98D,110S,116Q,135V,136M,148V,154K,178T,225S
ON501633	SEARCH_153_gag	Uganda	2013		genomic DNA			1	231	6L,14P,27I,31G,33N,41ST,83L,91V,110N,112A,115V,116A,120S,128D,148V,180D,208G,210S,225S
ON501671	SEARCH_154_gag	Uganda	2013		genomic DNA			1	231	6L,27I,31G,33N,71D,83L,86A,87Q,91V,96I,98D,115V,116T,120G,128D,136M,148V,154K,169F,178T,187D,203R,208G,210S,225S
ON501814	SEARCH_155_gag	Uganda	2016		genomic DNA			1	231	6L,27I,41T,71D,83I,87Q,116A,120A,124V,148V,154K,169F,177C,178A,180D,187D,208G,225S
ON501881	SEARCH_156_gag	Uganda	2017		genomic DNA			1	231	6L,33N,83L,91L,93K,94K,95G,96V,116A,120S,124V,148V,171V,180D,183A,225S
ON501752	SEARCH_157_gag	Uganda	2013		genomic DNA			1	231	6A,11I,12Y,14S,15L,26A,27I,30R,31G,54M,58I,71D,83L,87Q,92P,96L,111P,148V,154K,169F,178T,183G,200S,203R,207S,208G,225S
ON502020	SEARCH_158_gag	Kenya	2013		genomic DNA			1	231	6A,9H,15L,27I,30R,31G,54M,58I,71D,83L,87Q,91V,92P,111P,120H,128D,148I,153V,154K,169F,171V,178AT,183G,187D,200S,207S,208G,225S
ON501954	SEARCH_159_gag	Kenya	2013		genomic DNA			1	231	3M,6A,11I,14P,15L,26A,27I,30R,31G,54M,58V,71D,83L,92P,111P,128D,148V,154K,169F,180D,183G,187D,200S,203R,207S,208G
ON501935	SEARCH_160_gag	Uganda	2016		genomic DNA			1	231	6A,11T,14S,15V,27I,54M,58I,71D,83L,91V,111I,116A,120G,128D,148V,154K,169F,178T,180D,191I,200G,203R,208G,210S
ON501649	SEARCH_161_gag	Uganda	2013		genomic DNA			1	231	3IV,6L,27I,83MV,91N,92P,96L,148V,180D
ON502090	SEARCH_162_gag	Kenya	2015		genomic DNA			1	231	6A,15L,33N,54M,56M,58V,71D,83T,87Q,92P,96I,115V,116A,120G,131R,148V,169F,178T,179L,191I,200S,207T,208G,225S
ON501873	SEARCH_163_gag	Uganda	2017		genomic DNA			1	231	6A,11T,12Y,14S,15M,27I,31N,44A,48P,54M,58V,59I,71D,128D,148V,154K,169F,178T,180D,191I,200S,203R,205M,208G,210S
ON501645	SEARCH_164_gag	Uganda	2014		genomic DNA			1	231	6L,27I,41A,83T,91N,92P,120S,124V,148V,154K,180D,225S
ON501839	SEARCH_165_gag	Uganda	2016		genomic DNA			1	231	6A,11I,14PS,15F,16T,27I,30R,31G,54M,58I,82K,83L,87Q,92P,96L,111T,120G,148V,154K,169F,171A,178T,183G,203R,204G,207T,208G,225S,230I
ON501902	SEARCH_166_gag	Uganda	2014		genomic DNA			1	231	6L,14T,15L,27I,50T,83M,120S,148V,154K,180D,194S,225S
ON501806	SEARCH_167_gag	Uganda	2013		genomic DNA			1	231	6A,11M,13S,14P,15L,26A,27I,29D,50G,54M,58V,68I,71D,83L,91V,111P,115M,116A,118I,120G,128D,131R,148V,169F,171V,180D,200S,203R,207T,208G,225S
ON501826	SEARCH_170_gag	Uganda	2016		genomic DNA			1	231	6A,11T,14N,15L,27I,54M,58I,71D,91V,96L,111P,116A,120A,128D,148V,154K,169F,178T,183G,200S,203R,207A,208G,210S
ON501686	SEARCH_171_gag	Uganda	2013		genomic DNA			1	231	6L,15L,27I,31G,33N,41T,83L,87Q,91V,96I,102G,116T,120S,148V,180D,183NT,208G,210ST
ON502089	SEARCH_172_gag	Kenya	2015		genomic DNA			1	231	6A,14N,15L,27I,29D,31G,50H,54M,58I,71D,83L,91V,111P,115L,116Q,120S,128D,129L,148V,154K,169F,178ST,180D,187D,203R,204G,208G,210ST,225S
ON502115	SEARCH_173_gag	Kenya	2016		genomic DNA			1	231	6A,14S,15L,27I,54M,58V,71D,83L,92P,111P,120G,123A,128D,148V,154K,169F,178T,183G,200S,203R,208G,225S
ON502161	SEARCH_174_gag	Kenya	2017		genomic DNA			1	231	6A,11I,14P,15F,27I,29D,31G,33N,54M,58I,71D,83L,92P,111P,120G,128D,148V,154K,169F,171C,178T,183G,191I,200S,203R,207T,208G
ON501711	SEARCH_176_gag	Uganda	2013		genomic DNA			1	231	6A,14G,15V,27I,31G,41T,45D,54M,58I,71D,83L,87Q,91V,92Q,96I,111I,116A,120H,128D,148V,154K,169F,178T,183G,191I,200S,203R,207T,208G
ON502116	SEARCH_177_gag	Kenya	2016		genomic DNA			1	231	6A,15L,16T,27I,30R,54M,58I,71D,83L,87Q,88V,92P,96I,107A,111P,115V,116I,120S,128D,148V,154K,169F,171A,180D,183T,187D,200S,207A,208G
ON501778	SEARCH_178_gag	Uganda	2013		genomic DNA			1	231	6L,27I,87Q,91V,96V,116A,120H,148V,180D,225S
ON501989	SEARCH_179_gag	Kenya	2013		genomic DNA			1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,183G,200A,203R,207T,208G
ON502057	SEARCH_180_gag	Kenya	2013		genomic DNA			1	231	6A,41T,71D,86A,87Q,98D,120S,148V,169F,178T,183H,200S,203R,208G
ON501829	SEARCH_186_gag	Uganda	2016		genomic DNA			1	231	6A,11T,12Y,15L,54M,58V,71D,83M,87Q,92P,96L,111V,115M,118I,128D,131R,148V,169F,171A,178T,180D,200G,207T,208G
ON501851	SEARCH_187_gag	Uganda	2016		genomic DNA			1	231	6L,14N,15L,27I,41T,83L,86T,87Q,91V,96V,116A,148V,154K,180D
ON502027	SEARCH_188_gag	Kenya	2013		genomic DNA			1	231	6A,15V,27I,54M,58I,71D,83L,110N,111I,116A,120G,128D,148V,154K,169F,178T,183G,200S,203R,208G,225S
ON502043	SEARCH_189_gag	Kenya	2013		genomic DNA			1	231	6L,15L,27I,41T,50G,71D,83L,91V,96I,116T,120S,128D,135V,148V,154K,169F,178T,187D,203R,208G,210S,225S
ON501721	SEARCH_190_gag	Uganda	2013		genomic DNA			1	231	6M,27I,41T,54M,58I,59I,83Q,87P,91V,96I,98D,110N,115M,120S,148V,211I
ON501698	SEARCH_191_gag	Uganda	2013		genomic DNA			1	231	5G,6A,11I,15V,27I,36I,44AS,50HQ,71D,83I,86A,87Q,92P,96I,110N,116R,120S,128D,148V,154K,180D,207T,208G
ON501638	SEARCH_192_gag	Uganda	2013		genomic DNA			1	231	6A,10F,11T,12Y,15V,27I,54M,58I,71D,83L,92P,111P,120G,128D,148V,153V,154K,169F,171I,180D,183G,203R,207T,208G
ON501958	SEARCH_194_gag	Kenya	2013		genomic DNA			1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,86A,87Q,111P,116A,120S,128D,148V,153V,154K,169F,171I,178T,183G,191I,200S,207T,208G
ON502106	SEARCH_195_gag	Kenya	2016		genomic DNA			1	231	6A,15L,33N,54M,56M,58V,71D,83T,87Q,92P,96I,115V,116A,120G,131R,148V,169F,178T,179L,191I,200S,207T,208G,225S
ON501802	SEARCH_196_gag	Uganda	2013		genomic DNA			1	231	6A,14P,15L,16T,27I,33N,54M,58V,71D,83L,92P,96L,111S,120G,128D,148V,154K,169F,178T,187D,200S,208G,210S,225S
ON501965	SEARCH_197_gag	Kenya	2013		genomic DNA			1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120A,128D,148V,154K,169F,178T,183G,200S,203R,207A,208G,230I
ON501627	SEARCH_198_gag	Uganda	2013		genomic DNA			1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,111P,116A,120S,128D,148V,154K,169F,178T,183G,200S,203R,208G,210S,225S
ON501687	SEARCH_201_gag	Uganda	2013		genomic DNA			1	231	6L,14P,15L,27I,41T,78V,83M,91A,120S,148V,154K,180D
ON501735	SEARCH_202_gag	Uganda	2013		genomic DNA			1	231	2V,6A,11I,14S,15L,23*,27I,29D,54M,58I,60R,71D,79D,80*,83T,87Q,91V,96I,111I,116T,120S,148V,154K,156R,169F,177G,180D,184*,187D,190M,191I,203R,206R,208G,225S
ON501783	SEARCH_203_gag	Uganda	2016		genomic DNA			1	231	3I,6A,11I,15F,27I,30R,31G,54M,58I,71D,83L,86T,87Q,91F,92P,96L,111P,148V,154K,163E,169F,178T,183T,187D,191T,200S,208G
ON501733	SEARCH_205_gag	Uganda	2013		genomic DNA			1	231	6L,14P,15L,27I,41I,83T,87Q,91L,92P,110N,120S,124V,135V,148V,180D,208G,225S
ON502065	SEARCH_206_gag	Kenya	2013		genomic DNA			1	231	6A,14S,15L,27I,54M,58I,71D,83L,92P,111P,120G,128D,148V,154K,169F,178T,183G,191I,200S,203R,208G
ON501937	SEARCH_207_gag	Uganda	2016		genomic DNA			1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,91V,110N,111I,116A,120A,128D,148V,154K,169F,178T,183G,191I,203R,208G
ON501838	SEARCH_208_gag	Uganda	2016		genomic DNA			1	231	2V,4PT,6A,11I,12Y,15L,27I,48A,54M,58V,71D,83LV,92P,98DE,111T,116A,120G,131R,148V,154K,169F,178T,180D,200N,203R,207A,208G
ON501763	SEARCH_209_gag	Uganda	2013		genomic DNA			1	231	6A,11I,14N,15L,27I,31G,54M,58I,71D,83L,92P,111P,120G,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
ON501724	SEARCH_210_gag	Uganda	2013		genomic DNA			1	231	6A,14P,15L,26A,27I,30R,54M,58V,71D,83L,92P,110N,111V,115V,120G,131R,148V,154K,169F,178T,180D,200AS,203R,207A,208G
ON502016	SEARCH_211_gag	Kenya	2013		genomic DNA			1	231	6A,11I,12Y,14T,15L,27I,31Q,36I,54M,58I,71D,83L,87Q,111P,116A,120S,124V,128D,148V,169F,171C,183H,200S,203R,207S,208G,212EK,225S
ON502001	SEARCH_212_gag	Kenya	2013		genomic DNA			1	231	6A,11T,15L,27I,54M,58I,68I,71D,83L,92P,111P,120S,128N,132G,148V,154K,169F,171A,178T,180D,183G,187D,200A,203R,207A,208G
ON501822	SEARCH_213_gag	Uganda	2016		genomic DNA			1	231	6L,27I,41T,83L,116A,124V,148V,180D,191I,208G
ON501975	SEARCH_214_gag	Kenya	2013		genomic DNA			1	231	6A,10P,11I,14S,15L,27I,31G,54M,58I,71D,83L,86AV,87Q,92P,96I,111IV,116A,120A,128D,129L,148V,154KR,169F,178T,194AS,200S,203R,207PS,208G
ON502130	SEARCH_215_gag	Kenya	2017		genomic DNA			1	231	6A,12L,14T,15L,27I,54M,58I,71D,83L,92P,102GS,111P,115M,116A,120S,124V,128D,148V,154K,169F,178T,180D,203R,204G,207T,208G
ON501772	SEARCH_216_gag	Uganda	2013		genomic DNA			1	231	6L,27I,71D,87Q,96I,98D,116R,120S,148V,180D
ON501846	SEARCH_217_gag	Uganda	2017		genomic DNA			1	231	2L,6A,11I,12Y,14S,15L,27I,30R,36I,83L,87Q,91V,111P,120S,128D,131R,138F,148V,154K,180D,203R,208G,225S
ON501789	SEARCH_220_gag	Uganda	2013		genomic DNA			1	231	6S,27I,45D,50G,54M,58I,83T,116A,120G,146C,147PS,148V,180D,210S
ON501616	SEARCH_221_gag	Uganda	2014		genomic DNA			1	231	6L,27I,41T,91A,116A,120S,124V,148V,171V,183G,208G
ON501730	SEARCH_222_gag	Uganda	2013		genomic DNA			1	231	6A,13S,14P,15F,27I,30R,31G,48A,54M,58I,83L,87Q,92P,96L,111P,120S,128D,148V,154K,169F,171V,178T,183G,200S,203R,207S,208G,225S
ON501773	SEARCH_223_gag	Uganda	2013		genomic DNA			1	231	6A,15L,27I,33N,54M,58V,71D,83I,92P,96L,111P,120S,128D,148V,169F,178T,200S,203R,208G
ON502010	SEARCH_224_gag	Kenya	2013		genomic DNA			1	231	6A,11T,14S,15L,27I,41T,50S,54M,58I,71D,87Q,92P,96I,111P,115V,116A,120S,128D,148V,154K,169F,171C,180D,203R,204G,207T,208G
ON501750	SEARCH_225_gag	Uganda	2013		genomic DNA			1	231	6A,10A,15L,27I,33N,54M,58V,71D,83L,92P,96L,111P,120G,128D,148V,154K,169F,178T,200S,203R,208G,225S
ON501884	SEARCH_226_gag	Uganda	2017		genomic DNA			1	231	6L,27I,83L,87Q,91V,98D,110S,120S,148V,180D,194S
ON501707	SEARCH_227_gag	Uganda	2013		genomic DNA			1	231	6L,11T,14P,27I,31N,52F,58A,71D,83L,116A,120A,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
ON502109	SEARCH_228_gag	Kenya	2016		genomic DNA			1	231	33N,54L,83I,87Q,91V,96I,116T,120S,148V,160S,180D,208Q,225S
ON501697	SEARCH_229_gag	Uganda	2013		genomic DNA			1	231	6A,12HY,14AS,15L,27I,33N,54M,58V,71D,83L,87Q,92P,96L,111T,115IL,120GS,128D,148V,169F,178T,183H,200S,203R,207A,208G,225S
ON501641	SEARCH_230_gag	Uganda	2013		genomic DNA			1	231	6A,11I,14T,15L,27I,54M,58I,71D,83L,91V,111P,116A,120S,128D,148V,154K,169F,171A,178T,180D,183Q,200S,207T,208G
ON501969	SEARCH_231_gag	Kenya	2013		genomic DNA			1	231	2V,6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,183G,191I,203R,207A,208G
ON502122	SEARCH_232_gag	Kenya	2016		genomic DNA			1	231	6A,41A,83L,91V,96L,120S,124V,148V,154K,180D,225S
ON501787	SEARCH_233_gag	Uganda	2013		genomic DNA			1	231	6L,15L,27I,31N,41T,71D,91V,116A,120A,128D,148V,169F,171C,178T,180D,187D,200S,203R,210S
ON502105	SEARCH_235_gag	Kenya	2016		genomic DNA			1	231	6A,11I,14T,15L,27I,54M,58I,71D,83L,87Q,91V,111T,116A,120G,128D,148V,154K,169F,178T,180D,200S,203R,208G
ON502080	SEARCH_236_gag	Kenya	2014		genomic DNA			1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,92P,96I,111P,116A,118I,120G,128D,148V,154K,169F,178T,183G,200ST,203R,204S,207A,208G
ON502136	SEARCH_237_gag	Kenya	2017		genomic DNA			1	231	6A,11I,14P,15L,31G,52F,54M,58I,71D,83L,92P,111A,120A,128D,148V,154K,169F,178T,180D,187D,203R,208G
ON501742	SEARCH_238_gag	Uganda	2013		genomic DNA			1	231	6A,8R,9A,10IM,15V,23*,31GS,54M,58I,60EG,71D,80*,83L,92P,101GR,111I,117*W,120NS,128DN,137GR,148V,154KR,156GR,167KQR,169F,171V,178T,180D,184*,200S,203R,206GR,207S,208E,229K
ON502050	SEARCH_239_gag	Kenya	2013		genomic DNA			1	231	2V,4R,6P,11A,12Y,27I,41T,71D,83L,91A,96L,112D,116A,119T_H,148V,154K,169F,178T,180D,187D,203R,208G
ON501749	SEARCH_244_gag	Uganda	2013		genomic DNA			1	231	6A,15V,27I,54M,58I,71D,83L,87Q,92P,120S,131R,148V,154K,169F,178T,183G,203R,207T,208G
ON501626	SEARCH_245_gag	Uganda	2013		genomic DNA			1	231	6L,15L,58A,83I,120S,148V,154K,160S,178T,180D,210S
ON502087	SEARCH_246_gag	Kenya	2016		genomic DNA			1	231	6T,11I,14N,15L,27I,31G,54M,58I,71D,83L,87Q,92P,111P,120IS,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
ON501930	SEARCH_247_gag	Uganda	2017		genomic DNA			1	231	2V,3M,6A,11T,12Y,15L,26A,27I,30R,31G,54M,58V,71D,83L,92P,111P,115V,116A,120G,128D,129L,148V,153IV,154K,169F,171IV,177C,178T,183G,187D,200S,203R,207S,208G,225S
ON502072	SEARCH_248_gag	Kenya	2014		genomic DNA			1	231	6A,11I,14S,15L,27I,54M,58I,71D,92P,111I,120S,124V,128D,148V,154K,169F,178T,183G,200S,203R,208G,210S,225S
ON502131	SEARCH_249_gag	Kenya	2017		genomic DNA			1	231	6L,27I,41T,83L,86A,87Q,91V,96I,98D,116T,120S,199R,207V,208G
ON501900	SEARCH_250_gag	Uganda	2017		genomic DNA			1	231	6L,27I,83L,86I,87P,91L,116A,124M,148V,180D
ON501910	SEARCH_251_gag	Uganda	2016		genomic DNA			1	231	6A,11T,15L,27I,30R,31G,54M,58I,71D,83L,87Q,92P,96I,111I,116A,120G,128D,129L,148V,154K,169F,178T,183G,200A,203R,207S,208G,225S
ON501709	SEARCH_253_gag	Uganda	2013		genomic DNA			1	231	3M,6A,11T,12Y,15L,27I,54M,58V,71D,83L,92P,107S,110N,111V,115M,120S,131R,148V,169F,171A,191I,200S,207T,208G
ON502056	SEARCH_254_gag	Kenya	2013		genomic DNA			1	231	6A,11A,12Y,14T,15M,27I,54M,58I,71D,83L,92P,111P,120S,124V,128D,148V,154K,169F,178T,183G,187D,200S,203R,208G
ON501700	SEARCH_255_gag	Uganda	2013		genomic DNA			1	231	6A,11M,13N,14P,15L,27I,30R,31G,54M,58I,59I,71D,83L,87Q,92P,111T,115V,120S,124V,128D,148V,154K,169F,178T,183H,200S,203R,208G,225S
ON502099	SEARCH_258_gag	Kenya	2016		genomic DNA			1	231	6A,14N,15L,27I,54M,58I,83L,92P,96L,111P,120A,128D,148V,154K,169F,171V,178T,183G,191I,203R,207T,208G,209AV,225S
ON501782	SEARCH_259_gag	Uganda	2013		genomic DNA			1	231	6A,11I,15V,27I,54M,58I,83L,111T,116A,120G,148V,154KR,180D,191I,194S,208G,225S
ON501891	SEARCH_260_gag	Uganda	2017		genomic DNA			1	231	6A,9H,13S,14P,15L,27I,30R,31G,54M,58I,71D,83L,91A,92P,111P,120G,123A,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G
ON501832	SEARCH_261_gag	Uganda	2016		genomic DNA			1	231	6A,27I,31N,36I,41T,50H,71D,83T,91V,96L,116T,118I,120G,148V,154K,162K,169F,178T,180D,187D,199R,203R,210S,225S
ON502101	SEARCH_262_gag	Kenya	2016		genomic DNA			1	231	6A,11I,27I,30R,54M,58I,71D,83L,87Q,92P,111P,120G,128D,148V,169F,178T,183G,191I,200S,203R,207A,208G
ON501740	SEARCH_263_gag	Uganda	2013		genomic DNA			1	231	6A,11I,14N,15L,27I,30R,54M,58I,71D,91V,111P,116A,120S,128D,148V,154K,169F,180D,183G,187D,200S,203R,208G
ON501634	SEARCH_264_gag	Uganda	2013		genomic DNA			1	231	6L,15L,27I,41T,71D,91V,96V,116T,120S,148V,169F,178T,187D,203R,208G,225S
ON501791	SEARCH_265_gag	Uganda	2013		genomic DNA			1	231	6A,11T,12Y,15L,47T,54M,58V,71D,83L,87Q,92P,110N,111V,115V,120G,131R,148V,154K,163E,169F,180D,200S,203R,207T,208G,225S
ON501820	SEARCH_267_gag	Uganda	2016		genomic DNA			1	231	6A,11I,14T,15F,27I,29D,31G,54M,58I,59I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,183G,191I,198CR,200S,207T,208G,210S
ON501837	SEARCH_269_gag	Uganda	2016		genomic DNA			1	231	6L,14P,27I,36I,41T,83L,87Q,91H,92P,116A,135V,148V,180D,208G
ON502152	SEARCH_270_gag	Kenya	2017		genomic DNA			1	231	6L,27I,41T,71D,83L,91V,96I,116T,120S,148V,154K,169F,178T,180D,203R,208G,225S
ON501625	SEARCH_271_gag	Uganda	2013		genomic DNA			1	231	6L,27I,41T,83L,120S,148V,154KR,178T,199R,225S
ON501702	SEARCH_273_gag	Uganda	2013		genomic DNA			1	231	6L,14S,15L,27I,31G,33N,41T,71D,91A,116A,120S,124V,148V,154K,169F,180D,187D,203R,207Q,208G
ON501630	SEARCH_274_gag	Uganda	2013		genomic DNA			1	231	6A,8R,11A,14P,15L,18K,23*,27I,31G,54M,58I,71D,80*,83L,86G,87Q,91L,92P,96I,101R,111P,116A,117*,120S,127R,128D,133*,148V,154K,156R,167K,169F,177C,178T,183G,184*,187Q,191I,200S,203R,206R,207S,208E,229K
ON501961	SEARCH_275_gag	Kenya	2013		genomic DNA			1	231	2V,6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,183G,191I,200S,207T,208G,210S,225S
ON501623	SEARCH_276_gag	Uganda	2013		genomic DNA			1	231	6A,11I,14G,15M,27I,30R,31G,54M,58I,71D,83L,86P,87Q,91F,92P,95H,96I,111P,115V,116I,120S,128D,148V,154K,169F,178T,183G,200S,203R,208G
ON501747	SEARCH_279_gag	Uganda	2013		genomic DNA			1	231	6L,15L,27I,41T,83L,110N,116A,120S,148V,180D,229K
ON502151	SEARCH_281_gag	Kenya	2017		genomic DNA			1	231	6A,11I,12L,14T,15L,27I,54M,58I,71D,83L,91IV,92P,111P,115L,120S,128D,148V,154K,169F,171AITV,178T,180D,183Q,200ST,203R,207S,208G
ON501862	SEARCH_282_gag	Uganda	2017		genomic DNA			1	231	6L,15L,27I,86A,87Q,91V,96I,98D,100T,116R,120S,148V,180D,225S
ON501966	SEARCH_283_gag	Kenya	2013		genomic DNA			1	231	6A,12L,14T,15L,27I,54M,58I,83L,92P,111P,115L,120S,128D,148V,154K,165I,169F,171V,178T,190M,191I,200S,207T,208G,225S
ON501650	SEARCH_285_gag	Uganda	2016		genomic DNA			1	231	6H,16T,27I,31S,41T,71D,83T,91V,115V,116A,120S,148V,154K,169F,178T,180D,187D,191I,207T,208G,225S
ON501751	SEARCH_286_gag	Uganda	2013		genomic DNA			1	231	6L,27I,41A,45D,54S,83T,92P,120S,124V,148V,154K,180D,225S
ON502095	SEARCH_287_gag	Kenya	2016		genomic DNA			1	231	6V,12Y,14T,15L,27I,54S,58V,71D,83L,86P,87Q,92P,96L,111P,115V,120G,128D,148V,169F,171A,178T,183G,200S,207S,208G,225S
ON502028	SEARCH_288_gag	Kenya	2013		genomic DNA			1	231	6V,11I,15V,26A,27I,30R,31G,54M,55I,58I,71D,83L,87Q,92P,96I,111I,115V,116T,128D,148V,154K,169F,178T,180D,200S,203R,207S,208G,225S
ON501893	SEARCH_289_gag	Uganda	2017		genomic DNA			1	231	6T,11I,12Y,15V,31G,54M,58I,71D,83T,91V,111I,113D,115M,120S,128D,148V,154K,169F,171V,180D,187D,203R,207S,208G,225S
ON502026	SEARCH_290_gag	Kenya	2013		genomic DNA			1	231	6A,14S,15L,27I,54M,58I,71D,83L,86A,91V,111P,120G,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G,216S
ON501812	SEARCH_294_gag	Uganda	2013		genomic DNA			1	231	6L,27I,41T,120A,148V,171V,180D,191I,210S,225S,230I
ON501644	SEARCH_295_gag	Uganda	2013		genomic DNA			1	231	2V,6A,11I,15L,26A,30R,31G,54M,58I,68I,71D,79D,83L,92P,111P,120G,123A,148V,169F,180D,183G,200A,203R,207S,208G,230I
ON502051	SEARCH_297_gag	Kenya	2013		genomic DNA			1	231	6A,27I,41T,71D,87Q,92P,120S,148V,169F,178T,187D,203R,207A,208G
ON501968	SEARCH_299_gag	Kenya	2013		genomic DNA			1	231	6A,15L,27I,50G,54M,58V,71D,83L,91IV,92P,111P,120G,128D,131R,148V,154K,169F,178T,180D,183Q,191IV,200IT,203R,204G,207A,208G,225GS,230IV
ON501959	SEARCH_300_gag	Kenya	2013		genomic DNA			1	231	6A,11I,12F,14T,15L,27I,31G,33N,54V,58I,71D,83L,87Q,92P,96I,111P,115V,116Q,120G,128D,148V,153V,154K,169F,171I,178T,183G,200S,207S,208G,225S
ON501705	SEARCH_301_gag	Uganda	2013		genomic DNA			1	231	6A,11I,14N,15L,27I,31G,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207S,208G,210S,225S
ON501715	SEARCH_302_gag	Uganda	2013		genomic DNA			1	231	6A,12Y,14S,15V,44A,50S,54S,58I,71D,83M,111P,115V,116A,120G,128D,148V,154K,169F,178T,183G,203R,208G,210S,225S
ON502108	SEARCH_307_gag	Kenya	2016		genomic DNA			1	231	3I,6A,11T,12Y,14S,15P,16T,27I,31G,33N,41T,58I,83L,91V,111P,115IV,116A,120ST,141L,148V,169F,171V,178T,183G,187D,203R,208G
ON502143	SEARCH_308_gag	Kenya	2017		genomic DNA			1	231	6A,11I,14T,15L,27I,50G,58V,71D,83L,92P,111T,120G,128D,148V,154K,169F,178T,194T,208G,216A,225S
ON501938	SEARCH_309_gag	Uganda	2017		genomic DNA			1	231	6A,11I,14P,15F,27I,29D,31G,33N,50A,54M,58I,71D,83L,87Q,92P,111P,120G,123S,128D,148V,154K,169F,171V,178T,183G,187D,203R,204G,207K,208G,225S
ON501760	SEARCH_310_gag	Uganda	2013		genomic DNA			1	231	6L,27I,31G,41T,91V,98D,120S,148V,160S,171V,180D,208G,210S,225S
ON501635	SEARCH_311_gag	Uganda	2013		genomic DNA			1	231	6A,15V,27I,58I,71D,83L,92P,96I,111P,115V,116T,120G,128D,148V,154K,169F,171A,177G,178T,180D,200S,207T,208G,225S
ON501654	SEARCH_313_gag	Uganda	2013		genomic DNA			1	231	6A,15V,27I,41T,45D,54A,58V,71D,83L,91V,98D,116A,121T,128D,148V,154K,169F,178T,180D,191I,203R,208G,210S,225S
ON501672	SEARCH_314_gag	Uganda	2013		genomic DNA			1	231	6L,31G,33N,41T,71D,83L,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
ON501903	SEARCH_315_gag	Uganda	2015		genomic DNA			1	231	6T,14P,15L,33C,47C,54M,58V,71D,83L,92P,110N,120G,131R,148V,154K,169F,171V,203R,207A,208G,225S
ON502088	SEARCH_316_gag	Kenya	2015		genomic DNA			1	231	2V,6A,11T,14T,15L,27I,29D,31G,33N,41A,54M,58I,83L,92P,111P,115V,120S,128D,132K,148V,154K,169F,171V,178T,180D,200S,203R,207T,208G
ON501706	SEARCH_317_gag	Uganda	2013		genomic DNA			1	231	6A,11I,13S,14P,15F,27I,30R,31G,54M,58I,83L,87Q,92P,96L,111P,115V,120G,128D,148V,154K,169F,171A,180D,183G,200S,203R,207S,208G,225S
ON502086	SEARCH_319_gag	Kenya	2015		genomic DNA			1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,163E,169F,178T,200S,207S,208G,225S
ON501901	SEARCH_321_gag	Uganda	2017		genomic DNA			1	231	6L,15L,27I,83L,116T,120S,148V,180D,225S
ON501863	SEARCH_322_gag	Uganda	2017		genomic DNA			1	231	6A,12N,15L,29D,54M,58V,71D,92P,96I,107S,111I,116A,120G,128D,148V,154K,169F,171A,178T,180D,200S,210S
ON501631	SEARCH_323_gag	Uganda	2013		genomic DNA			1	231	6L,14P,15L,31G,41T,71D,83I,91V,96L,111P,116A,120S,124V,135V,148V,154K,169F,178T,180D,187D,203R,208G,210S
ON501728	SEARCH_324_gag	Uganda	2013		genomic DNA			1	231	6A,11IM,15L,27I,54M,58V,79D,83L,91IV,96I,111M,116A,120G,128D,148V,154K,169F,171I,174S,178T,180D,207T,208G
ON501841	SEARCH_326_gag	Uganda	2016		genomic DNA			1	231	6L,15L,27I,86A,87Q,91V,96I,98D,100T,116R,120S,148V,180D,225S
ON501678	SEARCH_327_gag	Uganda	2013		genomic DNA			1	231	6A,11I,15V,27I,30R,31G,54M,58I,71D,83L,87Q,92P,96L,111P,128D,148V,154K,169F,177C,178T,183G,200S,203R,207S,208G,210S
ON501952	SEARCH_328_gag	Kenya	2013		genomic DNA			1	231	6A,12L,14S,15L,27I,54M,58I,71D,83L,91V,96L,111P,115L,116A,120A,128N,132G,148V,154K,169F,178T,183S,191I,200S,203R,207A,208G,210S
ON501681	SEARCH_329_gag	Uganda	2013		genomic DNA			1	231	2V,6A,10R,11I,14P,15F,27I,50F,54M,58I,83L,91V,111T,116D,120G,121N_AGN,128D,131R,148V,152E,154K,169F,171A,178T,183G,191I,200S,203R,207A,208G,225S
ON501792	SEARCH_332_gag	Uganda	2013		genomic DNA			1	231	6A,9G,15L,27I,50S,54M,58V,71D,83LV,92P,111I,120S,128D,131R,148V,154K,169F,171A,178T,180D,200S,207MT,208G
ON501926	SEARCH_333_gag	Uganda	2017		genomic DNA			1	231	2V,6A,11I,14P,15M,16T,27I,31G,44A,58I,71D,79D,83L,86A,87Q,91V,96I,98D,111P,115V,116IT,120G,123G,148V,169F,178T,180D,207S,208G,210S,225S
ON501651	SEARCH_334_gag	Uganda	2014		genomic DNA			1	231	6L,15L,27I,31N,41T,71D,91V,116A,120A,128D,148V,169F,171C,178T,180D,187D,199KR,200S,203R,210S
ON501668	SEARCH_335_gag	Uganda	2014		genomic DNA			1	231	6L,27I,30R,50E,83L,86P,91Q,115V,116A,120S,124V,148V,180D,204G,207A,208G,216I,225S
ON501869	SEARCH_337_gag	Uganda	2016		genomic DNA			1	231	6A,11I,15V,27I,54M,58I,71D,75D,83L,92P,111I,120S,128D,148V,154K,169F,178T,183G,200S,203R,208G,225S
ON502164	SEARCH_338_gag	Kenya	2015		genomic DNA			1	231	6A,11I,14S,15L,27I,50S,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,171A,178T,180D,200S,207T,208G
ON502091	SEARCH_340_gag	Kenya	2016		genomic DNA			1	231	6L,15M,27I,41T,71D,83L,86P,87Q,91V,96I,98D,116T,148V,154K,169F,178T,187D,191I,203R,204S,208G
ON501677	SEARCH_341_gag	Uganda	2013		genomic DNA			1	231	6A,9H,11I,14S,15L,27I,33RS,50G,54M,58I,71D,83L,111T,116A,120G,131R,148V,169F,178T,200S,203R
ON502081	SEARCH_346_gag	Kenya	2014		genomic DNA			1	231	6A,11I,14AP,15MV,27I,54M,58I,71D,83L,86AV,91V,92P,111P,120S,128D,148V,154K,169F,178T,183G,187D,200S,203R,208G
ON501928	SEARCH_347_gag	Uganda	2017		genomic DNA			1	231	6A,11L,12Y,15L,30R,31G,54M,58I,71D,83L,87Q,92P,96L,111P,116Q,118I,148V,169F,178T,183G,200S,203R,207S,208G
ON502113	SEARCH_349_gag	Kenya	2016		genomic DNA			1	231	6A,11I,14V,15M,16T,27I,31G,33N,48I,58I,71D,83L,86I,111P,116A,120G,128D,148V,169F,180D,183G,203R,207A,208G
ON502030	SEARCH_350_gag	Kenya	2013		genomic DNA			1	231	6A,11I,27I,54M,58I,71D,92P,111T,120S,148V,154K,169F,178T,183G,187D,200S,203R,208G,225S
ON501988	SEARCH_351_gag	Kenya	2013		genomic DNA			1	231	6A,11I,14N,15L,27I,45D,50Y,58V,71D,83L,92P,111P,120G,128D,148V,154K,169F,178T,183G,200S,207T,208G,225S,230I
ON501617	SEARCH_354_gag	Uganda	2013		genomic DNA			1	231	2V,4P,6S,11I,12Y,15L,27I,48A,54M,58V,71D,83L,92P,111T,116A,120G,123A,131R,148V,154K,169F,178T,180D,200N,203R,208G
ON501852	SEARCH_355_gag	Uganda	2017		genomic DNA			1	231	6L,27I,50V,71D,83L,86Q,91V,96I,116Q,120S,128D,148V,154K,180D,183T,225S
ON501817	SEARCH_356_gag	Uganda	2016		genomic DNA			1	231	6A,11I,12Y,14S,15L,26A,27I,30R,31G,54M,58I,71D,83L,87Q,92P,96L,111P,148V,154K,169F,178T,183G,200S,203R,207S,208G
ON501781	SEARCH_357_gag	Uganda	2013		genomic DNA			1	231	6A,11IT,14N,15L,27I,31G,33NS,50S,54M,58I,71D,83L,91AV,111ST,115IL,116AG,120NS,128D,148V,154K,169F,178T,183G,200A,203KR,207T,208G,225S
ON502005	SEARCH_358_gag	Kenya	2013		genomic DNA			1	231	6A,14S,15L,27I,54M,58I,71D,92P,111I,120S,131R,148V,154K,169F,171V,178T,183G,187D,200S,203R,208G,210S
ON501784	SEARCH_361_gag	Uganda	2013		genomic DNA			1	231	6L,27I,83L,91V,110N,116A,120S,148V,180D,208G,225S
ON502077	SEARCH_362_gag	Kenya	2014		genomic DNA			1	231	2V,6A,11T,15V,27I,31G,33N,54M,58I,71D,83L,92P,111T,115IV,116A,120G,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G,210S
ON501880	SEARCH_363_gag	Uganda	2017		genomic DNA			1	231	6A,11I,14N,15L,27I,54M,58I,71D,83I,91V,111P,116A,120A,128D,148V,154K,169F,178T,183G,200S,203R,207A,208G,210S
ON501703	SEARCH_364_gag	Uganda	2013		genomic DNA			1	231	6A,15V,26A,27I,41T,54M,58I,71D,83L,92P,120S,121T,148V,154K,169F,178T,180D,203R,208G,225S
ON501818	SEARCH_366_gag	Uganda	2016		genomic DNA			1	231	6A,9G,15L,27I,50S,54M,58V,71D,83L,92P,111I,116N,120GS,128D,131R,148V,154K,169F,171A,178T,180D,200S,207IM,208G
ON501658	SEARCH_367_gag	Uganda	2013		genomic DNA			1	231	6A,12Y,15L,27I,54M,58V,71D,83L,87Q,92P,96I,98D,111V,115M,120G,123S,131R,148V,169F,171A,178T,180D,200S,207T,208G,225S,230I
ON501664	SEARCH_369_gag	Uganda	2013		genomic DNA			1	231	2V,6A,11I,15L,26A,27I,30R,31G,50G,54M,58I,71D,79D,83L,87Q,92P,96I,111P,116A,120G,148V,154K,169F,178T,183G,200S,203R,207S,208G,210S
ON501890	SEARCH_370_gag	Uganda	2017		genomic DNA			1	231	6L,27I,50G,83T,91V,96I,116T,120S,148V,180D,208G,210S
ON502045	SEARCH_371_gag	Kenya	2013		genomic DNA			1	231	6A,11I,12HL,14NT,15L,27I,50HQ,54M,58I,71D,83L,86AV,87Q,92P,96I,111P,115L,116A,120S,128D,148V,154K,169F,171AT,178ST,180DE,183DGNS,187DE,200S,203R,207PS,208G,225GS
ON501957	SEARCH_372_gag	Kenya	2013		genomic DNA			1	231	6A,11I,14N,15L,27I,54M,58I,71D,83T,96I,115M,116A,120S,121T,124V,148V,154K,169F,171V,178T,200S,203R,210S,225S
ON501886	SEARCH_373_gag	Uganda	2017		genomic DNA			1	231	6L,27I,83L,148V,154K,171V,180D
ON502163	SEARCH_375_gag	Kenya	2016		genomic DNA			1	231	6A,11I,15V,31G,54M,58I,71D,83L,91V,111P,116T,120G,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
ON502093	SEARCH_376_gag	Kenya	2015		genomic DNA			1	231	6A,27I,30R,54M,58I,71D,83L,91P,96L,120S,128D,129L,148V,154K,169F,180D,183G,203R,207A,208G,225S,230I
ON501713	SEARCH_377_gag	Uganda	2013		genomic DNA			1	231	6L,14P,15L,27I,41T,83L,87HQ,91V,96IM,110N,115V,116A,120S,148V,154K,178T,225S
ON501738	SEARCH_378_gag	Uganda	2013		genomic DNA			1	231	6A,11I,12F,15L,16T,23*,27I,31G,33N,54M,58I,60E,71D,80*,83L,87Q,91V,101R,111P,115V,116A,117*,120G,127R,128D,137R,148V,154K,156R,169F,171C,178T,180D,184*,187D,200A,203R,206R,207T,208K,222R,225S,229K
ON501704	SEARCH_379_gag	Uganda	2013		genomic DNA			1	231	2V,6A,11T,12Y,15L,27I,33N,54M,58V,71D,83L,91V,96L,111V,115V,120G,123A,131R,148V,154K,169F,171I,177C,180D,187D,203R,208G
ON501876	SEARCH_380_gag	Uganda	2017		genomic DNA			1	231	2V,6A,11I,12Y,14S,15L,27I,30R,31G,33N,48S,54M,58V,71D,83L,92P,111P,120G,128D,148V,154K,169F,171I,183G,187D,200S,207S,208G,225S
ON502120	SEARCH_384_gag	Kenya	2016		genomic DNA			1	231	6L,27I,50G,59I,83L,91V,96L,111T,120G,148V,199R,225S
ON501951	SEARCH_387_gag	Kenya	2013		genomic DNA			1	231	6A,10W,14P,33N,75D,83L,91V,96L,116A,120S,148V,187D,204G,208G
ON502019	SEARCH_389_gag	Kenya	2013		genomic DNA			1	231	6L,15L,27I,41T,83L,91A,116A,120S,148V,183S,187D,208G
ON501922	SEARCH_390_gag	Uganda	2016		genomic DNA			1	231	6A,14N,15L,27I,50S,54M,58I,83L,87P,96I,98D,111P,115V,116A,120G,128D,148V,154K,169F,178T,183G,203R,207A,208G,210S
ON502158	SEARCH_392_gag	Kenya	2017		genomic DNA			1	231	6A,10N,11I,12Y,14T,15F,27I,29D,31G,33T,48I,54M,58I,71D,83L,92P,111P,116A,120G,124V,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G,225S
ON502011	SEARCH_394_gag	Kenya	2013		genomic DNA			1	231	6L,15L,27I,33N,83L,96I,116T,120G,148V,178T,208Q,225S,230I
ON501895	SEARCH_396_gag	Uganda	2017		genomic DNA			1	231	6A,10A,15L,27I,30R,31G,54M,58I,71D,83L,86A,87Q,91L,92P,96L,111T,112H,115V,116A,118I,120G,128D,148V,154K,169F,180D,187D,200N,203R,208G,210S,225S
ON501980	SEARCH_398_gag	Kenya	2013		genomic DNA			1	231	6L,14P,15L,41T,52M,83L,91Q,110S,120S,148V,180D,208G
ON502071	SEARCH_399_gag	Kenya	2015		genomic DNA			1	231	2V,6A,11I,14P,15L,26A,27I,30R,54M,58V,91V,111T,116A,120G,139H,148V,154K,178T,200S,203R
ON501799	SEARCH_400_gag	Uganda	2013		genomic DNA			1	231	6L,27I,41T,83L,86A,87Q,91V,116A,120S,124V,148V,183G,203R,208G,225S
ON502068	SEARCH_401_gag	Kenya	2014		genomic DNA			1	231	3M,6A,11I,14P,15M,16T,27I,31G,54M,58I,71D,83L,91V,96I,111T,116A,120G,123A,128D,148V,154K,169F,178T,183G,191I,203R,207T,208G,225S
ON502032	SEARCH_402_gag	Kenya	2013		genomic DNA			1	231	6A,11I,14T,15M,27I,50G,54M,58I,83L,111T,116A,120A,128D,148V,154K,169F,171A,178T,183G,200S,203R,208G,210N,225S
ON501669	SEARCH_403_gag	Uganda	2013		genomic DNA			1	231	2V,6IL,14P,15L,27I,31N,41T,71D,83L,91V,110N,116A,120S,148V,169F,178ST,180D,187D,203R,208G,210S,225S
ON502110	SEARCH_404_gag	Kenya	2016		genomic DNA			1	231	6A,9H,14S,15L,27I,31G,47T,54M,58I,71D,83I,92P,111I,115M,116A,120A,124V,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
ON501842	SEARCH_405_gag	Uganda	2016		genomic DNA			1	231	6A,14N,15L,27I,31G,33N,54M,58I,79D,83L,87Q,111P,116A,120S,124V,148V,154K,169F,178T,183H,200S,203R,208G,225S
ON502154	SEARCH_406_gag	Kenya	2017		genomic DNA			1	231	6A,14S,15L,41T,71D,83L,91V,96L,110N,116A,128D,148V,154K,169F,178T,180D,187D,203R,204G,207Q,208G,210S
ON501905	SEARCH_407_gag	Uganda	2016		genomic DNA			1	231	6A,11IV,12Y,15M,26A,27I,30R,31G,52I,54M,58I,71D,83L,87Q,91L,92P,96L,111P,116A,128D,148V,154K,169F,178T,180D,200S,203R,207S,208G
ON501676	SEARCH_408_gag	Uganda	2013		genomic DNA			1	231	6L,14P,15L,27I,41T,71D,83T,87Q,92P,96I,116A,128D,148V,154K,169F,171V,179A,180D,187D,208G,210S,225S
ON501756	SEARCH_409_gag	Uganda	2013		genomic DNA			1	231	6L,27I,41A,83T,91N,92P,120S,124V,148V,154KR,180D,225S
ON502098	SEARCH_410_gag	Kenya	2016		genomic DNA			1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,203R,204S,207A,208G,225S,229IR,230I
ON501780	SEARCH_411_gag	Uganda	2013		genomic DNA			1	231	6A,11I,15L,27I,30R,31G,45D,54M,58I,71D,83L,87Q,91V,92P,96I,111I,116A,120H,128D,148V,154K,169F,178T,183G,200S,203R,207T,208G
ON502064	SEARCH_412_gag	Kenya	2013		genomic DNA			1	231	6L,15L,16T,41T,50S,83T,91V,120S,154K,210S,225S
ON501931	SEARCH_413_gag	Uganda	2016		genomic DNA			1	231	6A,10L,11I,15L,26A,27I,30R,31G,36I,45D,54M,58I,71D,83L,87P,88V,92P,98D,111T,115V,116A,120G,124V,128D,148V,169F,178T,183H,200S,203R,207S,208G,225S
ON501982	SEARCH_414_gag	Kenya	2013		genomic DNA			1	231	6A,11I,14V,15L,27I,54M,58V,71D,83L,92P,111T,120S,128D,148V,154K,169F,171C,178T,180D,187D,207S,208G,225S
ON501848	SEARCH_415_gag	Uganda	2017		genomic DNA			1	231	3I,6A,11I,12Y,14S,15L,26A,27I,30R,31G,36I,54M,58V,71D,83L,86T,87Q,91F,92P,96L,111P,120H,128D,148V,154K,169F,180D,187D,200S,207A,208G,213EK
ON501683	SEARCH_416_gag	Uganda	2013		genomic DNA			1	231	6L,27I,41T,71D,83I,116A,120A,124V,148V,169F,177C,178A,180D,187D,203R,208G,225S
ON501628	SEARCH_418_gag	Uganda	2013		genomic DNA			1	231	6A,14S,15L,27I,29D,54M,58I,71D,83T,91V,92P,111I,113D,120G,128D,148V,154K,169F,180D,187D,200S,203R,208G,225S
ON501794	SEARCH_419_gag	Uganda	2013		genomic DNA			1	231	6L,14P,15L,27I,31G,33N,41T,71D,83L,91V,110N,115IV,116A,120NS,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
ON501998	SEARCH_420_gag	Kenya	2013		genomic DNA			1	231	6A,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,116N,120S,128D,148V,154K,169F,178T,180D,187D,200S,203R,207A,208G
ON501655	SEARCH_421_gag	Uganda	2013		genomic DNA			1	231	6A,14S,15L,26A,27I,30R,31G,54M,58I,71D,83I,87Q,92P,96I,111P,116A,120H,128D,148V,154K,169F,171V,178T,180D,183R,187D,191I,200S,207S,208G,225S
ON501807	SEARCH_424_gag	Uganda	2013		genomic DNA			1	231	6A,11I,14P,15L,27I,30R,31G,54M,58I,64AT,71D,79D,83L,92P,111P,120S,148V,154K,169F,178T,200S,203R,204G,207S,208G
ON501661	SEARCH_425_gag	Uganda	2013		genomic DNA			1	231	6A,14P,27I,29D,79D,87Q,91V,96L,110N,116A,120G,124V,136I,148V,180D,208G,225S
ON501674	SEARCH_426_gag	Uganda	2013		genomic DNA			1	231	6L,15L,27I,83L,91V,116A,120S,123A,148V,154K,160A,180D,183T,225S
ON502144	SEARCH_428_gag	Kenya	2017		genomic DNA			1	231	6L,14S,15L,27I,83L,91V,116A,120S,148V,180D,225S
ON501859	SEARCH_429_gag	Uganda	2017		genomic DNA			1	231	6L,14P,15L,16T,27I,41T,83L,91A,120S,148V,180D,208G
ON501827	SEARCH_430_gag	Uganda	2016		genomic DNA			1	231	6L,27I,36I,41T,83L,87Q,91H,92P,98D,116A,135V,148V,180D,208G
ON501717	SEARCH_431_gag	Uganda	2013		genomic DNA			1	231	6L,15L,27I,41T,50S,83L,87Q,91V,98D,120S,148V,180D,183T,187D,208G
ON501882	SEARCH_433_gag	Uganda	2017		genomic DNA			1	231	6L,15L,27I,50G,54L,83L,91N,116A,120S,128D,148V,180D,225S
ON501754	SEARCH_434_gag	Uganda	2013		genomic DNA			1	231	6L,14P,27I,29D,83M,91Q,110N,116A,120S,148V,154K,171V,177G,180D,208G,225S
ON501768	SEARCH_435_gag	Uganda	2013		genomic DNA			1	231	6L,14P,15L,27I,83L,91P,116N,120G,148V,180D
ON502008	SEARCH_436_gag	Kenya	2013		genomic DNA			1	231	6A,11T,14T,15L,27I,31G,48I,50H,52I,54M,58I,71D,83L,86A,87Q,92P,96L,111P,115M,120A,128D,132K,148V,154K,169F,178T,180D,200S,203R,208G
ON502146	SEARCH_437_gag	Kenya	2017		genomic DNA			1	231	6A,9H,11I,14S,15L,27I,31G,35EK,48AITV,54M,58I,71D,83L,91A,92AP,111AV,120G,128D,148V,153V,154K,169F,171I,178T,204S,207T,208G,225S
ON502003	SEARCH_438_gag	Kenya	2013		genomic DNA			1	231	6A,14T,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,199R,200S,203R,207A,208G,225S,230I
ON502096	SEARCH_447_gag	Kenya	2016		genomic DNA			1	231	6A,14N,15L,27I,54M,58I,83L,92P,96L,111P,120A,128D,148V,154K,169F,171V,178T,183G,191I,203R,207T,208G,225S
ON501909	SEARCH_448_gag	Uganda	2016		genomic DNA			1	231	6A,11T,14S,15L,27I,54M,58I,71D,83L,91V,96L,111P,116A,120A,128N,132G,148V,154K,169F,178T,183S,199R,200A,203R,207A,208G,230I
ON501800	SEARCH_450_gag	Uganda	2013		genomic DNA			1	231	6A,11M,14P,15L,27I,30R,31G,54M,58I,71D,83L,87Q,92P,96I,111P,128D,148V,154K,169F,178T,183G,200S,203R,207S,208G,225S
ON501767	SEARCH_451_gag	Uganda	2013		genomic DNA			1	231	6A,11I,15V,26A,27I,30R,31G,58I,71D,83I,91A,92P,111I,120S,128D,148V,154K,169F,180D,183S,187D,200S,203R,208G,225A
ON501879	SEARCH_453_gag	Uganda	2017		genomic DNA			1	231	6L,27I,71D,83L,91V,111FL,120T,148V,180D,225S
ON502126	SEARCH_456_gag	Kenya	2016		genomic DNA			1	231	6A,10L,13S,14P,15L,27I,48A,50A,54V,58V,71D,83L,86A,91V,92Q,96I,111T,116A,120S,128D,131R,148V,154K,169F,178T,183G,199R,200S,203R,207T,208G,225S,230I
ON502079	SEARCH_457_gag	Kenya	2015		genomic DNA			1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,171C,178T,183G,200S,203R,207S,208G,225S
ON501695	SEARCH_458_gag	Uganda	2013		genomic DNA			1	231	3I,6L,14P,15L,27I,41T,71D,83T,91V,116A,120H,124V,128D,148V,154K,169F,171V,179V,180D,183NS,187D,208G,210S,225S
ON502000	SEARCH_459_gag	Kenya	2013		genomic DNA			1	231	6L,14V,83L,87Q,91V,96L,116A,120H,148V,154K,170R,180D,225S
ON501916	SEARCH_460_gag	Uganda	2016		genomic DNA			1	231	6L,13N,14P,27I,29R,30E,41T,50S,54S,83L,86A,87Q,91V,98D,110N,116A,120G,148V,180D,208G,225S
ON501945	SEARCH_461_gag	Uganda	2017		genomic DNA			1	231	6IV,27I,83I,91V,116A,120S,123A,148V,180DE
ON501722	SEARCH_462_gag	Uganda	2013		genomic DNA			1	231	6L,27I,71D,83L,91AT,120S,148V,180D,225S
ON502102	SEARCH_463_gag	Kenya	2016		genomic DNA			1	231	6A,9H,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,183G,191I,203R,207A,208G
ON501823	SEARCH_464_gag	Uganda	2016		genomic DNA			1	231	6A,11I,14P,15F,16T,27I,47S,54M,58V,68I,71D,83L,92Q,93H,98D,107A,111V,120G,128D,131R,148V,154K,169F,171A,178T,180D,191I,199R,200S,207T,208G
ON501997	SEARCH_465_gag	Kenya	2013		genomic DNA			1	231	6L,27I,83L,91V,96L,110N,120S,148V,180D,225S
ON501637	SEARCH_466_gag	Uganda	2013		genomic DNA			1	231	6A,10F,11T,12HY,15V,27I,54M,58I,71D,83L,91IV,92P,111P,120G,128D,148V,153V,154K,169F,171I,180D,183G,203R,207T,208G,225GS
ON501804	SEARCH_467_gag	Uganda	2013		genomic DNA			1	231	6A,11I,12Y,15L,27I,54M,58V,71D,83L,86A,87Q,91V,92P,98D,111V,113D,120G,131R,148V,154K,169F,178A,180D,187D,207A,208G
ON501856	SEARCH_469_gag	Uganda	2017		genomic DNA			1	231	6L,14V,15L,30R,59I,91V,111P,116A,148V,154K,177G,208G
ON501765	SEARCH_471_gag	Uganda	2013		genomic DNA			1	231	6A,11I,15L,30R,31G,54M,58I,71D,83L,92P,111P,120G,123S,128D,148V,154K,169F,178T,183G,191I,200S,203R,208G,210S
ON501913	SEARCH_472_gag	Uganda	2016		genomic DNA			1	231	6A,11I,15V,27I,31G,41T,58I,71D,83L,111I,116A,120AT,128D,129L,148V,154K,169F,178T,183G,200S,203R,208G,225S
ON501927	SEARCH_473_gag	Uganda	2017		genomic DNA			1	231	6A,11T,14T,15L,27I,54M,58I,71D,83L,92P,111V,120S,121T,128D,148V,154K,169F,178T,183G,200A,203R,207T,208G,210S
ON501923	SEARCH_474_gag	Uganda	2017		genomic DNA			1	231	6A,10W,14N,15L,27I,31G,36I,48A,50H,54M,58I,71D,83L,92P,120S,128D,129F,148V,154K,169F,178T,180D,200S,203R,207T,208G,225S,230I
ON501936	SEARCH_475_gag	Uganda	2016		genomic DNA			1	231	6L,14N,27I,83L,87Q,96I,98D,116T,148V,180D,208G
ON501934	SEARCH_476_gag	Uganda	2017		genomic DNA			1	231	6A,11I,14S,15L,27I,31G,33N,48P,54M,58I,71D,83L,86I,91V,111P,116A,120S,128D,148V,154K,169F,171C,177C,178T,183G,187EGQR,200G,203R,207T,208G,225S
ON501885	SEARCH_477_gag	Uganda	2017		genomic DNA			1	231	6A,11I,14P,15F,16T,27I,54M,58V,68I,71D,83T,92P,96I,107S,111S,116A,118I,120G,123A,128D,131R,148V,167KR,169F,178T,180D,200A,203R,208G
ON501967	SEARCH_478_gag	Kenya	2013		genomic DNA			1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,87Q,92P,96I,111P,116R,117*,120S,128D,148V,154K,169F,178T,183G,187D,191I,194T,200S,203R,207A,208E
ON501620	SEARCH_480_gag	Uganda	2013		genomic DNA			1	231	6L,14S,15L,27I,41T,83L,91A,120S,148V,180D
ON502103	SEARCH_481_gag	Kenya	2016		genomic DNA			1	231	6A,14T,15L,27I,50S,58I,71D,83L,92P,111P,115V,120G,128D,131R,148V,154KR,162KR,169F,178T,180D,199R,200N,203R,208G,225GS,230IV
ON501667	SEARCH_482_gag	Uganda	2013		genomic DNA			1	231	6L,14P,15L,16T,27I,31G,33N,41T,59I,71D,83L,91V,116A,120S,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G,230I
ON501731	SEARCH_484_gag	Uganda	2013		genomic DNA			1	231	6L,27I,36I,41T,83L,87Q,91H,92P,116A,135V,148V,180D,208G
ON501622	SEARCH_485_gag	Uganda	2013		genomic DNA			1	231	6A,11IMV,15L,27I,30R,31G,49S,50T,54M,58I,71D,83L,87Q,92P,96L,111T,120G,128D,131KR,148V,154K,169F,178T,183G,200S,207T,208G,210S,230IV
ON501685	SEARCH_486_gag	Uganda	2013		genomic DNA			1	231	6A,9A,13N,15L,27I,48I,50H,54M,58V,71D,83LV,92P,111V,115V,120S,131R,169F,178T,191I,200S,203R,207A,208G,225S
ON501981	SEARCH_487_gag	Kenya	2013		genomic DNA			1	231	2V,6A,11T,12Y,14P,15L,16T,27I,48A,54M,58V,71D,83L,92P,96I,111P,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S
ON501761	SEARCH_488_gag	Uganda	2013		genomic DNA			1	231	6L,14P,27I,44A,83I,120S,124M,148V,180D,230I
ON501801	SEARCH_489_gag	Uganda	2013		genomic DNA			1	231	6A,11I,12Y,14S,15IM,27I,30KR,54M,58I,71D,83L,87Q,92P,96L,111P,120G,128D,148V,154K,169F,171A,178T,180D,183G,200S,203R,207A,208G
ON501689	SEARCH_490_gag	Uganda	2013		genomic DNA			1	231	6A,15L,27I,31G,54M,58I,71D,80C,83I,86AV,87Q,92P,96I,111T,116R,120S,146C,148V,154K,169F,171V,177G,178T,187Q,200S,208G,225S
ON502022	SEARCH_491_gag	Kenya	2013		genomic DNA			1	231	6A,11I,14P,27I,42AV,50G,54M,58I,71D,83L,86P,92P,96I,111P,115L,116Q,120G,128D,148V,169F,171V,178T,203R,204G,207T,208G
ON502119	SEARCH_492_gag	Kenya	2016		genomic DNA			1	231	6L,27I,41T,71D,83T,87Q,96I,116A,120S,124V,148V,154K,169F,171V,178T,180D,187D,203R,210S,225S
ON502082	SEARCH_493_gag	Kenya	2014		genomic DNA			1	231	6A,11I,14N,15L,27I,33N,54L,58I,71D,83L,86P,91V,96L,111I,120A,128D,148V,154K,169F,178T,183G,203R,204G,207A,208G
ON501932	SEARCH_494_gag	Uganda	2016		genomic DNA			1	231	6A,14T,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,187D,200S,203R,207A,208G
ON501911	SEARCH_495_gag	Uganda	2016		genomic DNA			1	231	6L,14P,27I,41T,83L,91A,120S,148V,178T,200Q,225S
ON501904	SEARCH_499_gag	Uganda	2014		genomic DNA			1	231	6A,11T,12Y,15L,27I,33N,54M,58V,71D,83L,91V,96L,111V,115V,120G,123A,131R,148V,169F,178T,180D,203R,207A,208G
ON502124	SEARCH_502_gag	Kenya	2016		genomic DNA			1	231	6A,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,204G,207T,208G,222X
ON501629	SEARCH_503_gag	Uganda	2013		genomic DNA			1	231	6M,14P,15L,16ST,27I,31G,33N,41T,71D,91V,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,207AP,208AG,225S
ON501864	SEARCH_504_gag	Uganda	2017		genomic DNA			1	231	6L,14P,15L,27I,83L,91V,96L,116A,120H,148V,180D,208G,225S
ON502040	SEARCH_508_gag	Kenya	2013		genomic DNA			1	231	2V,6T,12F,14S,19V,26A,27I,33N,41T,54M,58I,71D,83L,87Q,91Y,92P,96L,120S,135V,148V,154K,160S,169F,171A,180D,183G,200S,203R,207A,208G,225S
ON502157	SEARCH_509_gag	Kenya	2017		genomic DNA			1	231	6L,15L,27I,41T,83L,91T,120S,148V,180D,199R
ON502073	SEARCH_511_gag	Kenya	2014		genomic DNA			1	231	2V,6A,11IT,14N,15L,27I,41T,45D,50H,58I,71D,83L,92P,111P,120G,148V,154K,169F,178T,183G,200S,203R,208G
ON502007	SEARCH_512_gag	Kenya	2013		genomic DNA			1	231	6A,11IV,14S,15L,27I,54M,58I,71D,83L,91V,111P,116A,120G,128D,148V,154K,169F,178T,183G,191IV,200S,203R,207PS,208G
ON501889	SEARCH_514_gag	Uganda	2017		genomic DNA			1	231	6A,15V,27I,54M,58I,71D,79D,83T,92P,120S,128D,148V,154K,169F,171I,180D,187D,191I,207T,208G
ON501639	SEARCH_515_gag	Uganda	2013		genomic DNA			1	231	6L,15IL,16ST,23*W,27I,54M,58I,71D,75EK,83L,91V,92P,111P,120S,128D,148V,180D,191I,222EG
ON501662	SEARCH_518_gag	Uganda	2013		genomic DNA			1	231	6A,11M,14S,15L,27I,31G,36I,41T,58I,71D,83M,91V,111T,115V,116T,120G,128D,148V,169F,171C,180D,187D,200S,203R,207A,208G
ON501679	SEARCH_519_gag	Uganda	2013		genomic DNA			1	231	6L,15L,27I,41T,83L,91N,92P,93A,116A,148V,180D,208G
ON502021	SEARCH_520_gag	Kenya	2013		genomic DNA			1	231	6A,11I,12L,14N,15L,31G,54M,58I,71D,78V,83L,92P,111P,115L,116Q,118I,120G,128D,148V,154K,169F,178T,187A,200S,203R,208G,223EG
ON501877	SEARCH_521_gag	Uganda	2017		genomic DNA			1	231	6L,27I,87Q,91V,96L,116A,120H,124V,148V,183G,208G,225IS,229K
ON501825	SEARCH_522_gag	Uganda	2016		genomic DNA			1	231	6L,15L,27I,31N,41T,54S,58A,71D,83L,91A,116A,120S,128D,148V,169F,178T,180D,187D,203R,208G,210S,216I
ON501714	SEARCH_523_gag	Uganda	2013		genomic DNA			1	231	6L,15L,27I,31N,41T,71D,86A,87Q,96I,116T,120G,128D,148V,169F,171C,178T,180D,187D,200S,203R,210S
ON501636	SEARCH_524_gag	Uganda	2013		genomic DNA			1	231	2V,6A,11I,15L,26A,30R,31G,54M,58I,68I,71D,79D,83L,92P,111P,120G,123S,148V,154K,169F,180D,183G,199R,200A,203R,207S,208G,225A,230I
ON501815	SEARCH_527_gag	Uganda	2016		genomic DNA			1	231	6L,15L,27I,41T,148V,154K,180D,225S
ON501836	SEARCH_529_gag	Uganda	2016		genomic DNA			1	231	6A,11I,15V,27I,54M,58I,71D,83L,91V,92P,111P,120S,128D,148V,153V,154K,169F,171V,178T,180D,203R,208G
ON501854	SEARCH_531_gag	Uganda	2016		genomic DNA			1	231	6A,14N,15L,27I,50S,54M,58I,71D,79D,83L,86P,91V,111P,120S,128D,148V,153V,154K,169F,178T,200S,203R,204S,207T,208G,225A
ON501816	SEARCH_533_gag	Uganda	2016		genomic DNA			1	231	6A,14NT,15L,27I,54M,58I,71D,83L,86I,91V,111I,116A,120G,123A,128D,148V,154K,169F,171V,178T,180DE,200ST,203R,204S,207AT,208G,225S
ON501696	SEARCH_534_gag	Uganda	2013		genomic DNA			1	231	6A,11IV,14P,15L,27I,54M,58V,71D,83L,92P,96L,111T,115L,120G,128D,148V,169F,178T,180DE,183HN,200ST,203R,207A,208G,225S
ON502004	SEARCH_536_gag	Kenya	2013		genomic DNA			1	231	6A,14N,15L,27I,50S,54M,58I,68L,71D,83T,92P,96I,111P,115L,116Q,120G,128D,148V,165M,169F,180D,187D,203R,204G,208G,225S
ON501766	SEARCH_537_gag	Uganda	2013		genomic DNA			1	231	6A,14T,15L,31S,71D,83M,86P,87Q,92P,96I,116T,120S,148V,169F,178T,187D,200S,203R,208G
ON502128	SEARCH_538_gag	Kenya	2016		genomic DNA			1	231	6A,11I,15L,27I,54M,58I,71D,83L,92P,111A,131R,148V,153V,154K,169F,171I,178T,183G,200S,203R,207T,208G
ON501840	SEARCH_539_gag	Uganda	2016		genomic DNA			1	231	6A,15V,27I,30R,54M,58I,71D,83L,116Q,118I,120GS,128D,131R,148V,154K,169F,179*PQS,180D,183G,200S,203R,208G,225S
ON502084	SEARCH_540_gag	Kenya	2015		genomic DNA			1	231	6A,11I,14G,15L,27I,50G,54M,58I,71D,83L,91A,92P,107S,111P,120S,128D,131R,148V,154K,169F,171A,178T,180D,191I,200S,207T,208G
ON502029	SEARCH_541_gag	Kenya	2014		genomic DNA			1	231	6L,27I,83L,148V,180D,225S,230I
ON502083	SEARCH_542_gag	Kenya	2015		genomic DNA			1	231	6A,15V,27I,50G,54M,58I,71D,83L,92P,111P,120S,128D,131R,148V,154K,169F,178T,191I,200S,203R,207T,208G
ON501992	SEARCH_544_gag	Kenya	2013		genomic DNA			1	231	6L,14S,15L,27I,41T,71D,83L,92P,116T,120S,124V,128D,148V,154K,169F,178T,180D,203R,208G
ON501870	SEARCH_545_gag	Uganda	2017		genomic DNA			1	231	6A,11I,14P,15F,16T,27I,30R,31G,54M,58I,71D,83M,86A,87Q,96I,111P,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,200S,203R,207A,208G,225S
ON502078	SEARCH_546_gag	Kenya	2015		genomic DNA			1	231	6A,11T,12F,14P,15L,27I,54M,58V,71D,83L,92P,111P,120G,128D,148V,154K,169F,171V,178T,203R,204G,207T,208G
ON502141	SEARCH_547_gag	Kenya	2017		genomic DNA			1	231	6L,15L,27I,54M,58V,83L,91A,92P,94V,111P,120S,128D,148V,154K,188S
ON501734	SEARCH_549_gag	Uganda	2013		genomic DNA			1	231	6A,15V,27I,54M,58I,71D,83L,91V,92P,96I,111I,120G,128D,148V,153V,154K,163E,169F,171I,178T,183G,203R,207S,208G,225S
ON502048	SEARCH_550_gag	Kenya	2013		genomic DNA			1	231	6V,11I,14N,15L,27I,31G,54M,58I,71D,83L,92P,111P,115L,116Q,120S,128D,148V,154K,169F,171V,187D,191I,200S,203R,207T,208G,209P,225S
ON501708	SEARCH_551_gag	Uganda	2013		genomic DNA			1	231	6L,27I,41A,83T,91N,92P,120S,124V,148V,154K,180D,225S
ON501844	SEARCH_554_gag	Uganda	2016		genomic DNA			1	231	27I,78S,83L,92P,116A,120AGST,124V,128D,132T,136M,148V,180D,183T,225S
ON501985	SEARCH_555_gag	Kenya	2013		genomic DNA			1	231	6A,10P,11I,14T,15F,18KR,27I,29D,31G,54M,58I,71D,83L,87Q,92P,96I,111P,120DG,127E,128D,132K,133*W,148V,154K,166N,169F,171AV,178T,179PQ,180DE,183DGNS,184*W,187D,200S,203KR,206EG,207S,208G,209AV,213EK,214IM,222E,223EG
ON501871	SEARCH_557_gag	Uganda	2017		genomic DNA			1	231	6L,13S,14P,15L,27I,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,204G,207Q,208G,210S
ON501924	SEARCH_558_gag	Uganda	2016		genomic DNA			1	231	6A,14S,15V,27I,41T,50A,58I,71D,83L,91V,92P,120S,124V,128D,148V,154K,169F,180G,200S,203R,207A,208G,225S
ON501619	SEARCH_560_gag	Uganda	2013		genomic DNA			1	231	6A,11M,13N,15L,27I,30R,31G,54M,58I,59I,71D,83L,87Q,92P,111T,115V,120S,128D,148V,154K,169F,178T,183H,200S,203R,208G,225S
ON501964	SEARCH_561_gag	Kenya	2013		genomic DNA			1	231	6A,11I,14S,15L,27I,45D,54M,58I,60E,71D,83L,92P,111M,120S,128D,148V,154K,169F,171A,178T,183G,200S,207S,208G,221MV
ON502104	SEARCH_562_gag	Kenya	2016		genomic DNA			1	231	6L,14S,15L,27I,71D,83L,86A,91V,115V,116A,128D,132K,136I,148V,154K,169F,177S,178T,187D,191I,207S,208G,225S
ON502076	SEARCH_563_gag	Kenya	2015		genomic DNA			1	231	6A,11T,12Y,15M,27I,54M,58I,71D,83M,86A,87Q,92P,111P,120S,148V,154K,169F,178T,183G,187D,203R,208G,225S
ON501878	SEARCH_565_gag	Uganda	2017		genomic DNA			1	231	6L,27I,50G,83L,91V,96L,116A,120A,128D,148V,154K,180D
ON501990	SEARCH_566_gag	Kenya	2013		genomic DNA			1	231	6A,14P,71D,83T,86Q,87Q,91V,96I,98D,112N,116I,148V,169F,178T,180D,187D,203R,208G,225S
ON501843	SEARCH_567_gag	Uganda	2016		genomic DNA			1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,111P,116A,120S,128D,148V,154K,169F,183G,200S,203R,207A,208G,210S
ON501847	SEARCH_569_gag	Uganda	2017		genomic DNA			1	231	6L,14S,27I,83L,116A,120S,124V,148V,171V,183G,225S
ON502012	SEARCH_570_gag	Kenya	2013		genomic DNA			1	231	6A,14S,15L,27I,54M,58I,71D,83L,92P,107A,111P,120S,128D,148V,154K,169F,178T,183S,191I,200N,203R,208G,210S,225S
ON501867	SEARCH_571_gag	Uganda	2016		genomic DNA			1	231	6A,14G,15L,20M,26AV,27I,30R,31G,48I,54M,58I,71D,79D,83L,92P,111P,148V,154K,169F,178ST,183G,200S,203R,207S,208G,225S
ON501808	SEARCH_572_gag	Uganda	2013		genomic DNA			1	231	6A,11I,13S,14P,15F,27I,30R,31G,54M,58I,83L,87Q,92P,96L,111P,115V,120GS,128D,148V,154K,169F,171V,178T,183G,191IV,203R,207S,208G,225S
ON501759	SEARCH_573_gag	Uganda	2013		genomic DNA			1	231	6A,14S,15L,27I,41T,71D,83T,91V,116A,148V,154K,169F,178T,180D,187D,203R,207AP,208G,210S,225S
ON501921	SEARCH_574_gag	Uganda	2016		genomic DNA			1	231	6L,15L,27I,41T,50T,54S,83L,91V,110N,116A,148V,180D
ON501739	SEARCH_575_gag	Uganda	2013		genomic DNA			1	231	6L,14P,27I,83L,91N,92P,110N,116A,120G,148V,180D,208G
ON501720	SEARCH_576_gag	Uganda	2013		genomic DNA			1	231	6L,14S,15L,27I,41T,71D,116A,120S,124V,148V,154K,169F,178T,180D,203R,210S
ON501987	SEARCH_577_gag	Kenya	2013		genomic DNA			1	231	6A,41T,71D,92P,120S,148V,154K,169F,178T,187D,200S,203R,208G,225S
ON501719	SEARCH_578_gag	Uganda	2013		genomic DNA			1	231	6A,14N,15L,27I,54M,58I,71D,83L,86I,91V,111P,116A,120S,128D,148V,154K,169F,178T,183G,200A,203R,207T,208G,225T,230I
ON501845	SEARCH_579_gag	Uganda	2017		genomic DNA			1	231	6A,27I,31N,41T,71D,75D,83L,116A,120S,148V,154K,162K,169F,178T,180D,187D,203R,208G,225S
ON501941	SEARCH_581_gag	Uganda	2017		genomic DNA			1	231	6A,11I,12Y,14S,15M,27I,31G,33N,54M,58I,71D,83L,87Q,92P,111P,119ST,128D,148V,154K,169F,178T,183G,200S,203R,207T,208G
ON501618	SEARCH_582_gag	Uganda	2013		genomic DNA			1	231	6A,11I,15V,27I,41T,45*E,50T,54M,58I,71D,83L,96I,110N,111T,116A,120G,128D,148V,154K,169F,180D,191I,200S,203R,207A,208G
ON501736	SEARCH_585_gag	Uganda	2013		genomic DNA			1	231	6L,27I,83L,86A,87Q,91V,96V,116A,120H,148V,180D,205M,209~,225S
ON501872	SEARCH_588_gag	Uganda	2016		genomic DNA			1	231	6L,14T,15L,27I,50A,83M,120S,148V,180D,208Q,225S
ON501656	SEARCH_589_gag	Uganda	2013		genomic DNA			1	231	6L,15L,27I,83L,87Q,91V,96I,116A,120H,148V,208G
ON502036	SEARCH_590_gag	Kenya	2013		genomic DNA			1	231	6L,14S,15L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,187D,200N,203R,208G
ON501875	SEARCH_594_gag	Uganda	2017		genomic DNA			1	231	6A,12L,14T,15L,27I,54M,58I,71D,83L,91V,96L,111P,115L,116A,120AP,128D,148V,154K,169F,178ST,180D,187D,200S,203R,207Q,208G
ON501803	SEARCH_595_gag	Uganda	2013		genomic DNA			1	231	6A,11I,12F,15L,16T,27I,31G,33N,54M,58I,71D,83L,91V,111P,115V,116A,120G,128D,148V,154K,169F,171C,178T,180D,187D,200A,203R,207T,208G,225S
ON502092	SEARCH_597_gag	Kenya	2015		genomic DNA			1	231	6A,10W,11I,12P,14S,15L,26A,27I,30R,31G,33Q,50G,54M,58I,71D,83L,87Q,92P,96I,111P,115L,116A,120G,128D,148V,169F,178T,183G,191I,200S,203R,207S,208G
ON502132	SEARCH_599_gag	Kenya	2016		genomic DNA			1	231	6V,11I,15V,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,171A,178T,183G,200S,203R,207T,208G,225S
ON501939	SEARCH_601_gag	Uganda	2017		genomic DNA			1	231	6P,11I,14P,15V,27I,54M,58I,71D,83T,91V,96I,111I,116A,128D,148V,154K,169F,183G,200N,203R,207A,208G
ON501640	SEARCH_602_gag	Uganda	2013		genomic DNA			1	231	6A,9V,11I,12N,14P,15L,27I,29D,31G,33N,54M,58V,71D,80*,83L,92P,111T,115V,116A,117*,120G,128D,131R,148V,154K,156R,167K,169F,178T,180D,184*,200D,203R,207S,208G,210S,229K
ON502135	SEARCH_603_gag	Kenya	2017		genomic DNA			1	231	6A,14S,27I,41T,50G,54M,58I,83L,87Q,92P,96L,107A,111P,115L,116Q,120G,128D,148V,169F,171A,178T,183S,203R,204G,207T,208G
ON501865	SEARCH_604_gag	Uganda	2017		genomic DNA			1	231	6A,11I,14S,15L,27I,36I,58V,71D,79D,83L,92P,96L,111T,120G,128D,148V,154K,169F,171V,177G,180D,187K,190M,191I,200A,203R,208G
ON502085	SEARCH_606_gag	Kenya	2015		genomic DNA			1	231	6L,14ST,15L,27I,50G,83L,87Q,91V,120S,148V,180D,208G
ON502074	SEARCH_607_gag	Kenya	2014		genomic DNA			1	231	6A,11I,27I,54M,58I,71D,83L,92P,111I,120G,128D,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G,225S
ON501946	SEARCH_609_gag	Uganda	2017		genomic DNA			1	231	6A,11I,12Y,14S,15M,27I,31G,54M,58I,71D,79D,83L,111T,115V,116A,120GS,148V,154K,156GV,169F,178T,180D,200S,207T,208G
ON501858	SEARCH_610_gag	Uganda	2017		genomic DNA			1	231	6A,11I,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,116A,120S,128D,148V,153V,154K,169F,171I,178T,180D,200S,203R,207T,208G
ON501821	SEARCH_611_gag	Uganda	2016		genomic DNA			1	231	6A,11T,12Y,14P,15L,16AS,27I,29D,54M,58V,71D,83T,87Q,91F,92P,111V,113D,116A,131R,148V,169F,188S,190LM,203R,208G,210S
ON502145	SEARCH_612_gag	Kenya	2017		genomic DNA			1	231	3MV,6A,11I,14P,15L,27I,30KR,31G,48IT,54M,58I,71D,83L,87Q,91L,92G,93K,94K,95G,96Q,111P,116A,120G,128D,129L,148V,154K,167MR,169F,171AT,178T,183G,200AS,203R,207S,208G
ON501874	SEARCH_614_gag	Uganda	2017		genomic DNA			1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,111P,116A,120G,123A,128D,148V,154K,169F,178T,180D,187D,200S,203R,208G
ON501809	SEARCH_615_gag	Uganda	2013		genomic DNA			1	231	6A,9A,13S,14P,15L,16A,27I,48I,54M,58V,71D,83T,92P,94N,96L,111V,120G,128D,131R,148V,154K,169F,180D,200S,203R,208G
ON502142	SEARCH_616_gag	Kenya	2017		genomic DNA			1	231	6A,11T,12Y,15L,27I,29D,54M,58V,71D,83L,92P,111T,115L,120G,128D,148V,154K,169F,178T,183G,203R,208G,210S
ON501861	SEARCH_618_gag	Uganda	2017		genomic DNA			1	231	2V,3I,6A,11I,14N,15L,26A,27I,29D,36I,45D,50Y,54M,58I,71D,83L,87Q,92P,96I,111P,116A,120G,148V,154K,169F,171C,180D,183G,200S,203R,207T,208G
ON502038	SEARCH_619_gag	Kenya	2013		genomic DNA			1	231	2V,6A,10W,14N,15L,27I,48A,50H,54M,58I,71D,83L,87Q,92P,96I,107S,111P,115L,116Q,120G,131R,148V,154K,169F,171V,180D,183G,187D,200S,203R,207T,208G,210S
ON501907	SEARCH_621_gag	Uganda	2016		genomic DNA			1	231	6A,11I,15V,27I,54M,58I,71D,83L,91V,106EG,110N,111I,116A,120S,128D,148V,154K,169F,178T,183G,200S,203R,208G,210S,225S
ON502150	SEARCH_623_gag	Kenya	2017		genomic DNA			1	231	6A,11I,15L,27I,54M,58V,71D,83L,92P,111T,116A,120G,128D,148V,154K,169F,178T,183G,203R,208G
ON502094	SEARCH_625_gag	Kenya	2015		genomic DNA			1	231	6A,13N,14P,15L,27I,41T,54M,58I,68I,71D,83L,87Q,92P,96I,111T,120G,128D,148V,169F,171V,178T,180Q,200S,203R,207T,208G
ON502156	SEARCH_626_gag	Kenya	2017		genomic DNA			1	231	6L,27I,83L,87Q,91V,98D,120S,148V,180D,183T
ON501898	SEARCH_627_gag	Uganda	2017		genomic DNA			1	231	6A,11M,12Y,14P,15M,31G,54M,58I,59I,71D,83L,87Q,91F,92P,96L,111P,120G,128D,148V,153V,169F,171I,178T,183G,200S,203R,207T,208G
ON501663	SEARCH_628_gag	Uganda	2013		genomic DNA			1	231	6A,11I,15V,31G,54M,58I,71D,83L,86I,87Q,91V,92P,96L,111T,115L,128D,148V,169F,178T,200S,203R,207S,208G
ON501834	SEARCH_629_gag	Uganda	2016		genomic DNA			1	231	3MV,6A,11IT,12Y,15L,54M,58V,71D,83T,86AV,87Q,91F,92P,111V,115V,120HN,128DE,131R,148V,163DE,169F,178ST,180D,200S,203R,208G
ON501824	SEARCH_630_gag	Uganda	2016		genomic DNA			1	231	6L,27I,36I,41A,83T,91N,92P,120S,124V,148V,154K,180D,225S
ON501732	SEARCH_631_gag	Uganda	2013		genomic DNA			1	231	2V,6A,11T,14N,15L,27I,45D,50Y,54M,58I,60GR,71D,83L,92P,111P,120GS,128D,131R,148V,154K,169F,178T,180D,184*W,191I,200S,203R,208G,210S
ON502018	SEARCH_632_gag	Kenya	2013		genomic DNA			1	231	6A,11I,14N,15L,26A,27I,36I,50G,52M,54M,58I,71D,83L,87Q,91V,92P,111P,120S,128D,148V,154K,169F,178T,203R,204G,207T,208G,210S,225S
ON502140	SEARCH_633_gag	Kenya	2017		genomic DNA			1	231	6L,14P,27I,41T,50S,54S,71D,83L,91V,110S,116Q,120S,128D,148V,154K,177G,180D,183Q,208G,225S
ON501942	SEARCH_634_gag	Uganda	2017		genomic DNA			1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,86I,91V,111P,116A,120G,128D,148V,154K,169F,171C,178T,183G,200S,203R,207A,208G
ON501755	SEARCH_635_gag	Uganda	2013		genomic DNA			1	231	6L,14P,27I,83L,91A,116A,120S,148V,170R,180D
ON502037	SEARCH_636_gag	Kenya	2013		genomic DNA			1	231	6A,9H,14S,15L,27I,50G,54M,58I,71D,83L,91V,111P,115V,116A,120A,128D,148V,153V,154K,169F,171I,178T,183G,200S,207T,208G
ON502147	SEARCH_637_gag	Kenya	2017		genomic DNA			1	231	6L,15L,27IV,41T,41T_K*YPCLQ,71D,83L,91A,96L,116A,120S,124V,136LM,148V,154K,169F,177G,178T,187D,203R,208G,210S
ON501914	SEARCH_639_gag	Uganda	2016		genomic DNA			1	231	6A,14S,15V,27I,54L,58I,68I,71D,83L,95H,110N,112A,115V,116A,120S,128D,132K,148V,154K,169F,178T,183G,203R,208G,211I
ON502155	SEARCH_640_gag	Kenya	2017		genomic DNA			1	231	6A,9H,11S,14V,15L,27I,31G,33N,36I,48V,58V,71D,83I,92P,107S,120S,128D,148V,154K,169F,171A,178T,180D,187D,200S,203R,204G,207S,208G
ON501805	SEARCH_641_gag	Uganda	2013		genomic DNA			1	231	6L,27I,83L,91V,116A,120S,123A,148V,180D,225S
ON501960	SEARCH_643_gag	Kenya	2013		genomic DNA			1	231	6A,11I,15L,27I,30R,31G,52I,54M,56M,58I,69I,71D,83L,92P,96I,128D,132K,148V,154K,169F,177C,178T,183G,200S,203R,207S,208G
ON501892	SEARCH_644_gag	Uganda	2017		genomic DNA			1	231	6A,12L,14T,15L,27I,41T,54M,58I,71D,83L,86I,87P,98D,111P,115M,116A,120A,128D,148V,154K,169F,183H,187D,200S,203R,207Q,208G
ON501918	SEARCH_645_gag	Uganda	2016		genomic DNA			1	231	6L,15L,27I,83L,91V,116A,148V,180DE,208G
ON501887	SEARCH_647_gag	Uganda	2017		genomic DNA			1	231	6L,15L,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177C,178T,180D,187D,203R,208G
ON502013	SEARCH_648_gag	Kenya	2013		genomic DNA			1	231	6A,14N,15L,27I,29D,31G,47S,54L,58I,71D,83L,87Q,92P,96I,110N,111I,116A,120G,128D,148V,154K,169F,177G,178T,200S,207T,208G
ON501828	SEARCH_649_gag	Uganda	2016		genomic DNA			1	231	6L,27I,83L,87HQ,91V,116A,120S,148V,160S,183G,208G,225S
ON502014	SEARCH_650_gag	Kenya	2013		genomic DNA			1	231	6L,27I,41T,83L,91A,96V,120G,148V,180D,208G,210S,225S
ON502035	SEARCH_651_gag	Kenya	2013		genomic DNA			1	231	6L,15L,27I,41M,50A,54S,83L,91V,110S,116A,120S,124V,148V,154K,180D,208G,210S,225S
ON501775	SEARCH_652_gag	Uganda	2013		genomic DNA			1	231	6A,11I,12Y,14C,15L,16AS,27IV,30R,54M,58I,71D,83L,87Q,91V,96I,110N,111A,115ILM,116A,120NS,128D,131R,148V,154K,162KR,169F,180D,183G,200P,203R,207AT,208G,210ST,225S
ON502039	SEARCH_653_gag	Kenya	2013		genomic DNA			1	231	6L,15L,27I,83L,120H,148V,178T,230I
ON502070	SEARCH_655_gag	Kenya	2015		genomic DNA			1	231	6L,15IL,27I,33N,83L,91Q,116A,120S,148V,180D,225S
ON501906	SEARCH_658_gag	Uganda	2016		genomic DNA			1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,91V,111P,116A,120G,128D,148V,153V,154K,169F,171I,178T,183G,191I,200S,203R,207A,208G
ON501894	SEARCH_659_gag	Uganda	2017		genomic DNA			1	231	6A,11I,15L,26A,30R,31G,54M,58I,59I,71D,92P,107S,111I,120S,128D,148V,154K,169F,171C,177C,180D,183G,191I,200S,203R,204S,207S,208G,225S
ON501675	SEARCH_660_gag	Uganda	2013		genomic DNA			1	231	6A,10P,14P,15L,27I,30R,31G,54M,58I,71D,79D,83L,92P,111P,120G,128D,148V,154K,169F,178T,187D,190M,191I,200S,203R,208G,210S,225S
ON501908	SEARCH_661_gag	Uganda	2016		genomic DNA			1	231	6L,27I,50T,83L,87Q,91A,96I,110N,116Q,120S,148V,154KR,180D
ON501771	SEARCH_662_gag	Uganda	2013		genomic DNA			1	231	6L,14P,15L,27I,41I,91V,96L,120A,125Q,135V,148V,225S
ON501652	SEARCH_664_gag	Uganda	2013		genomic DNA			1	231	6A,11I,13S,14P,15L,27I,29D,31G,48L,54M,58I,71D,83L,86A,87Q,91F,92P,111P,116A,120G,128D,148V,154K,169F,178T,180DE,187D,203R,208G,210ST,225S
ON501977	SEARCH_665_gag	Kenya	2013		genomic DNA			1	231	6A,12L,14T,15L,27I,54M,58I,71D,83L,92P,111P,115L,120S,128D,148V,154K,169F,178T,183G,200S,203R,207T,208G
ON502121	SEARCH_666_gag	Kenya	2016		genomic DNA			1	231	6A,10W,11T,15L,27I,54M,58V,68I,71D,83L,91A,92P,111P,120G,128N,132G,148V,154K,169F,178T,183G,191I,200S,207T,208G
ON502153	SEARCH_667_gag	Kenya	2017		genomic DNA			1	231	6L,15L,19IT,27I,41T,71D,83L,91P,96I,116A,124V,148V,154K,169F,178T,180D,187D,191I,200I,204G,207S,208G,210S
ON501912	SEARCH_668_gag	Uganda	2016		genomic DNA			1	231	6A,11I,14N,15L,27I,50S,54M,58I,61T,83L,91V,92P,111T,120S,128D,148V,169F,171V,178T,180D,200S,203R,204G,207H,208G
ON502017	SEARCH_669_gag	Kenya	2013		genomic DNA			1	231	6A,15V,27I,50G,54M,58I,71D,83L,91V,92P,111P,120S,128D,131R,148V,153V,154K,169F,171I,178T,180D,191I,200S,203R,207T,208G,225S
ON502042	SEARCH_670_gag	Kenya	2013		genomic DNA			1	231	6A,10P,11M,12Y,15L,27I,54Q,58I,68I,71D,87Q,92P,111P,120G,128N,132G,148V,154K,169F,177G,178T,187D,200A,203R,205I,208G
ON502134	SEARCH_672_gag	Kenya	2017		genomic DNA			1	231	6L,14T,15L,27I,50T,54L,83L,128D,148V,154K,180D,208G,225S
ON501948	SEARCH_673_gag	Uganda	2017		genomic DNA			1	231	6A,27I,41T,71D,83T,110NT,116A,148V,154K,169F,178T,180D,203R,208G,210S
ON501725	SEARCH_674_gag	Uganda	2013		genomic DNA			1	231	6L,14P,15L,27I,29D,41T,83L,91V,110N,116N,120S,148V,160PS,180D,208G,210S,225S
ON501973	SEARCH_675_gag	Kenya	2013		genomic DNA			1	231	6A,14S,27I,71D,83L,86P,87Q,92P,96I,98D,100S,110N,116R,120S,128D,148V,154K,169F,178T,183G,187D,191I,207Q,208G,225S
ON501764	SEARCH_676_gag	Uganda	2013		genomic DNA			1	231	6A,13S,14P,15F,27I,30R,31G,48A,54M,58I,83L,87Q,92AP,96L,111P,120G,128D,148V,154K,169F,171V,178T,180DE,183DGHR,200S,203R,207S,208G,225S
ON501793	SEARCH_677_gag	Uganda	2013		genomic DNA			1	231	3L,6A,11T,12Y,15L,27I,33N,54M,58V,71D,83L,86A,87Q,91F,92P,96L,98D,111P,115V,120G,131R,148V,169F,178T,200S,203R,207T,208G
ON502063	SEARCH_678_gag	Kenya	2013		genomic DNA			1	231	6A,10P,11M,12Y,15L,27I,54M,58I,68I,71D,83L,92P,111P,120G,128N,132G,148V,154K,169F,178T,183G,187D,191I,203R,208G
ON502024	SEARCH_679_gag	Kenya	2013		genomic DNA			1	231	2V,6A,11I,12L,14T,15L,27I,31G,33N,54M,58I,71D,83L,92P,96I,111P,115L,116A,128D,148V,154K,169F,178T,187D,200S,203R,207T,208G
ON501831	SEARCH_680_gag	Uganda	2016		genomic DNA			1	231	6T,14P,15L,33C,47C,54M,58V,71D,92P,110N,120G,131R,148V,154K,169F,171V,203R,207A,208G,225S
ON502031	SEARCH_681_gag	Kenya	2013		genomic DNA			1	231	6A,71D,83L,92P,107S,110N,120S,148V,154K,169F,171A,177G,180D,187D,190M,200S,203R,208G,225S
ON501797	SEARCH_683_gag	Uganda	2013		genomic DNA			1	231	6L,27I,41T,71D,83L,87Q,91V,110S,120S,148V,180D,191I,208G,225S
ON501653	SEARCH_684_gag	Uganda	2013		genomic DNA			1	231	6A,11AITV,14IV,15L,27I,31G,33N,58V,71D,83L,92P,111P,115V,120S,128D,148V,154K,169F,178T,180D,200S,203R,208G,225S
ON501657	SEARCH_685_gag	Uganda	2013		genomic DNA			1	231	6A,11T,15L,27I,54M,58V,71D,83L,92P,111V,120G,123S,131R,148V,154K,169F,178T,200S,203R,208G
ON501999	SEARCH_686_gag	Kenya	2013		genomic DNA			1	231	6A,27I,68I,71D,83L,116A,120S,128N,132G,136I,148V,169F,177G,178T,187D,203R,208G,210S
ON501896	SEARCH_687_gag	Uganda	2017		genomic DNA			1	231	6L,11I,27I,45D,50H,68I,83L,91V,96V,116T,120S,128D,141V,148V,154K,171V,177T,180D,208S,210S
ON501956	SEARCH_688_gag	Kenya	2013		genomic DNA			1	231	6L,14S,15L,27I,36I,41T,71D,83L,91A,116A,120S,128D,148V,154K,169F,178T,180D,187D,191T,203R,208G,225S
ON501819	SEARCH_689_gag	Uganda	2016		genomic DNA			1	231	4P,6A,12Y,15L,27I,33N,54M,58V,71D,83L,92P,111T,116A,120G,123A,131R,148V,154KR,169F,171V,178T,180DE,200N,203KR,207AP,208G,210ST
ON502123	SEARCH_691_gag	Kenya	2016		genomic DNA			1	231	6A,11T,15L,54M,58V,71D,83L,92P,96I,110N,120G,131R,148V,154K,169F,178T,200S,207T,208G
ON502125	SEARCH_692_gag	Kenya	2016		genomic DNA			1	231	3M,6A,10P,15L,16T,22S,27I,36I,54M,58V,71D,83L,92P,96I,111T,116A,120G,128D,148V,154K,169F,178T,183G,207T,208G
ON501853	SEARCH_693_gag	Uganda	2017		genomic DNA			1	231	6V,14P,15M,27I,54M,58I,71D,79D,83T,92P,110N,120S,128D,148V,154K,169F,171A,178T,180D,187D,207V,208G,225S,230I
ON502009	SEARCH_694_gag	Kenya	2013		genomic DNA			1	231	6A,14T,15L,27I,33N,54M,58I,71D,86P,87Q,92P,96I,98D,111V,116A,120S,132K,148V,153V,154K,169F,171I,178T,183G,191I,200S,203R,207T,208G,225S
ON501978	SEARCH_695_gag	Kenya	2013		genomic DNA			1	231	6A,11I,12Y,14S,15L,27I,31N,41T,54M,58I,71D,91V,111T,116A,120G,128D,148V,169F,178T,183G,191I,200S,203R,208G,225S
ON501811	SEARCH_696_gag	Uganda	2013		genomic DNA			1	231	6L,14S,15L,27I,31N,41T,54V,59I,71D,83T,91V,110N,116A,120S,124V,135V,148V,154K,169F,178T,180D,187D,200AT,203R,208G,225S
ON501888	SEARCH_697_gag	Uganda	2017		genomic DNA			1	231	6A,27I,31N,41T,71D,116A,120S,148V,154K,162K,169F,178T,180D,187D,203R,208G
ON501983	SEARCH_698_gag	Kenya	2013		genomic DNA			1	231	6A,14N,15L,27I,50C,54M,58I,83L,87Q,96I,111T,116A,120G,128D,148V,154K,169F,171V,178T,183G,200S,203R,207S,208G
ON501646	SEARCH_700_gag	Uganda	2013		genomic DNA			1	231	14P,15L,27I,41T,71D,91P,116A,120S,124V,148V,154K,169F,171V,180D,187D,203R,208G,225S
ON501693	SEARCH_701_gag	Uganda	2013		genomic DNA			1	231	6H,27I,41T,44A,50H,71D,83Q,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
ON501745	SEARCH_704_gag	Uganda	2013		genomic DNA			1	231	6A,11T,12Y,15L,54M,58V,71D,83L,92P,111V,115V,120G,131R,148V,169F,171V,180D,200A,203R,207A,208G
ON501647	SEARCH_705_gag	Uganda	2013		genomic DNA			1	231	6L,15L,27I,41T,75D,78V,83L,91V,116A,120G,148V,180D,183T,208G,225T,230I
ON501699	SEARCH_706_gag	Uganda	2013		genomic DNA			1	231	6A,11I,15V,27I,50G,54M,58I,71D,83L,86A,110N,111T,116A,120A,128D,131R,148V,154K,169F,171V,178T,180D,187D,203R,207A,208G
ON501643	SEARCH_707_gag	Uganda	2013		genomic DNA			1	231	6L,14P,15M,17A,41T,71D,83L,87Q,91V,96I,116T,124M,148V,154K,169F,180D,187D,203R,204G,208G
ON501660	SEARCH_708_gag	Uganda	2013		genomic DNA			1	231	6L,27I,44A,50E,83L,86T,91Q,116A,120S,124V,148V,180D,210S,216I,225S
ON501995	SEARCH_709_gag	Kenya	2013		genomic DNA			1	231	6A,10P,11I,14S,15L,27I,47C,50G,54M,58I,71D,75DE,83L,87Q,92P,96L,111P,120G,128D,131KR,148V,154K,160S,169F,171A,178T,183G,200S,207T,208G
ON502133	SEARCH_710_gag	Kenya	2016		genomic DNA			1	231	6A,10P,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120G,128D,148V,154K,169F,178T,191I,200S,203R,208G,210S
ON502034	SEARCH_712_gag	Kenya	2013		genomic DNA			1	231	6A,11I,14N,15L,27I,54M,58I,59I,60R,71D,82K,83L,92P,111P,120S,148V,154K,169F,178T,200S,203R,208G,225S
ON501769	SEARCH_713_gag	Uganda	2013		genomic DNA			1	231	6L,27I,71D,83L,91V,116A,120S,148V,170R,180D,225S
ON502114	SEARCH_714_gag	Kenya	2016		genomic DNA			1	231	2V,6A,11I,14P,15L,26A,27I,30R,54M,58V,91V,111P,116A,120G,139H,148V,154K,178T,200S,203R
ON501753	SEARCH_715_gag	Uganda	2013		genomic DNA			1	231	6L,11T,14P,15L,27I,31N,58A,71D,83L,110N,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
ON501680	SEARCH_716_gag	Uganda	2013		genomic DNA			1	231	6A,12N,14S,15L,27I,54M,58V,71D,83AV,92P,111V,115V,128D,131R,148V,154K,169F,177C,178ST,180D,187D,200N,203R,208G
ON501648	SEARCH_718_gag	Uganda	2013		genomic DNA			1	231	6A,11I,27I,41T,68I,71D,83T,91V,116A,120S,128N,132N,148I,154K,169F,178T,180D,187D,203R,208G,210S,219QR
ON501774	SEARCH_719_gag	Uganda	2013		genomic DNA			1	231	6A,11I,12Y,14N,15L,27I,29D,54M,58V,71D,83L,87Q,92P,96I,111T,115M,116T,120G,123A,128D,131R,148V,154K,169F,178T,180D,200S,203R,207Q,208G,225S
ON502159	SEARCH_721_gag	Kenya	2017		genomic DNA			1	231	6A,12L,14T,15L,27I,54M,58I,71D,83L,87Q,92P,98D,111P,115L,120G,128D,148V,153V,154K,169F,171I,178T,180D,200S,203R,207T,208G
ON501917	SEARCH_722_gag	Uganda	2016		genomic DNA			1	231	2V,6A,11I,27I,30R,31G,49S,50S,54M,58I,59I,71D,83L,87Q,92P,96I,110N,111I,116A,120S,148V,154K,169F,178T,183G,187D,200S,203R,208G,210S,225S
ON501949	SEARCH_723_gag	Uganda	2017		genomic DNA			1	231	6A,10W,11I,14N,15L,27I,31G,50G,54M,58I,71D,83L,86T,91V,92Q,111P,120S,128D,148V,154K,169F,178T,180D,200S,207T,208G
ON501688	SEARCH_725_gag	Uganda	2013		genomic DNA			1	231	6A,15V,27I,50S,54M,58I,71D,83L,111P,116A,120S,128D,148V,153V,154K,169F,171I,178T,183G,191I,200S,207Q,208G
ON501642	SEARCH_726_gag	Uganda	2013		genomic DNA			1	231	6A,14T,15L,27I,47C,54M,58I,71D,83L,92P,111I,113D,120S,128D,148V,154K,169F,178T,180D,200S,203R,207A,208G,210S
ON501857	SEARCH_728_gag	Uganda	2017		genomic DNA			1	231	6A,10P,15L,26A,27I,30R,31G,54M,58I,71D,79D,83L,87Q,92P,96I,111A,116A,120H,128D,148V,154K,169F,178T,180D,200S,203R,208G,225S
ON501758	SEARCH_729_gag	Uganda	2013		genomic DNA			1	231	6L,14P,44A,54I,78V,79D,83L,116A,120S,148V,180D
ON501974	SEARCH_730_gag	Kenya	2013		genomic DNA			1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
ON501748	SEARCH_731_gag	Uganda	2016		genomic DNA			1	231	6L,14H,15L,27I,29D,31N,33G,50H,59I,75D,83MV,91IT,110S,120S,124V,143K,148V,154K,180D,216S
ON501955	SEARCH_732_gag	Kenya	2013		genomic DNA			1	231	6A,10A,11M,14S,15L,27I,31G,41T,54M,58I,71D,83L,86A,87Q,92P,96I,111V,115M,116T,120A,128D,148V,154K,169F,178T,200S,203R,207V,208G,225S
ON501984	SEARCH_733_gag	Kenya	2013		genomic DNA			1	231	6A,14S,15M,27I,54M,58I,59I,71D,83L,92P,96I,111P,120G,128D,148V,154K,169F,178T,180D,200S,203R,208G
ON501723	SEARCH_734_gag	Uganda	2013		genomic DNA			1	231	6A,14S,15LV,27I,54M,58I,71D,83L,111P,116A,120G,128D,148V,154K,169F,178T,180D,187D,200S,207A,208G,225S
ON501718	SEARCH_736_gag	Uganda	2013		genomic DNA			1	231	6L,27I,83L,91N,116A,148V,178T,225S
ON502023	SEARCH_737_gag	Kenya	2013		genomic DNA			1	231	6A,11I,15V,27I,54M,58I,71D,83I,87Q,92P,96I,111I,116A,120S,124V,128D,148V,154K,169F,178T,180D,203R,207A,208G
ON501993	SEARCH_739_gag	Kenya	2013		genomic DNA			1	231	6A,10Y,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,171C,178T,183G,191I,200A,203R,207Q,208G,210S
ON501830	SEARCH_741_gag	Uganda	2016		genomic DNA			1	231	6A,11I,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,121T,128D,148V,154K,169F,178T,180D,191I,200S,203R,207A,208G
ON501690	SEARCH_742_gag	Uganda	2015		genomic DNA			1	231	6L,27I,41ST,83L,86PQ,87Q,91IV,98D,120S,124IV,148V,180D,208G,210S,225S
ON501786	SEARCH_743_gag	Uganda	2013		genomic DNA			1	231	6A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120A,128D,148V,154K,169F,187D,191I,200S,203R,208G
ON501726	SEARCH_744_gag	Uganda	2016		genomic DNA			1	231	6L,14P,15IL,16T,27I,41T,75D,78S,83L,87HQ,91V,96I,116T,120S,128D,148V,154K,169F,171A,178AS,180D,187D,207AT,208G,225S
ON502075	SEARCH_745_gag	Kenya	2014		genomic DNA			1	231	6A,15V,27I,41T,54M,58I,59I,71D,96L,111T,116A,131R,148V,153V,154K,169F,171V,180D,183G,203R,207T,208G