Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Capel (2012)	Evolution of the human immunodeficiency virus type 1 protease: effects on viral replication capacity and protease robustness	J. Gen. Virol. 93 (PT 12), 2625-2634 (2012)	1.99e-168	81	161	Mixed	Plasma	Direct PCR	Miscellaneous

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Accession	IsolateName	Country	Coll Date	MolType	Note	FirstAA	LastAA	MutList
JQ846091	1	Spain	04-Feb-1993	genomic RNA	subtype: B	1	231	6L,83L,91V,154K,171I,225S
JQ846093	100	Spain	18-Jul-2007	genomic RNA	subtype: B	1	231	6L,14P,27I,83L,86P,87Q,96I,120S,148I,154K,180D,225S
JQ846094	101	Spain	04-Apr-2007	genomic RNA	subtype: B	1	231	6L,83L,120H,128D,154K,171V,180D
JQ846096	103	Spain	25-Jul-2007	genomic RNA	subtype: B	1	231	6L,14P,41T,83L,199R,208G,210N,225S,230I
JQ846097	104	Spain	05-Jun-2007	genomic RNA	subtype: B	1	231	6L,14P,15L,16T,83L,148V,154K,178T
JQ846098	105	Spain	16-Feb-2007	genomic RNA	subtype: B	1	231	6L,44A,71D,83L,136M,154K,169F,178T,194S,208G,225S,230I
JQ846099	106	Spain	23-Jan-2007	genomic RNA	subtype: B	1	231	6L,15L,27I,41T,83L,91V,120S,148V,177C,178T,180D,199R
JQ846100	107	Spain	16-Aug-2007	genomic RNA	subtype: B	1	231	6L,83L,120H,128D,148A
JQ846101	108	Spain	02-Mar-2007	genomic RNA	subtype: B	1	231	6L,14P,27I,83L,91V,128D,148V,171V,180D
JQ846102	109	Spain	29-Jan-2007	genomic RNA	subtype: B	1	231	6L,14P,83L,154K,171I
JQ846103	11	Spain	07-Sep-1993	genomic RNA	subtype: B	1	231	6L,27I,83L,91P,120S,148V,180D,194S,225S,230I
JQ846104	110	Spain	22-Aug-2007	genomic RNA	subtype: B	1	231	6L,27I,41T,83L,87Q,96I,116T,128D,136I,148V,154K,178T,194S,199R
JQ846105	111	Spain	05-Jul-2007	genomic RNA	subtype: B	1	231	6L,54C,83M,87Q,115V,120S,148V,180D
JQ846106	112	Spain	31-May-2007	genomic RNA	subtype: B	1	231	6L,14S,83T,91V,180D
JQ846107	113	Spain	12-Jan-2007	genomic RNA	subtype: B	1	231	27I,68I,83L,128D,148V,180D
JQ846108	114	Spain	23-Jan-2007	genomic RNA	subtype: B	1	231	6L,14S,15L,27I,41T,83L,110N,120S,160S,180D,190M,208G,225S
JQ846109	115	Spain	19-Mar-2007	genomic RNA	subtype: B	1	231	6L,154K
JQ846110	116	Spain	13-Dec-2006	genomic RNA	subtype: B	1	231	6L,83L,148V,216S
JQ846111	117	Spain	24-Apr-2007	genomic RNA	subtype: B	1	231	6M,83L,148I,154K,180D
JQ846112	118	Spain	24-Jan-2007	genomic RNA	subtype: B	1	231	2L,6L,15L,27I,41T,68I,72A,83L,96I,116T,120S,194S,225S
JQ846113	119	Spain	19-Jul-2006	genomic RNA	subtype: B	1	231	6L,15L,27I,83L,110N,116A,148V,180D,208G
JQ846115	120	Spain	23-Aug-2007	genomic RNA	subtype: B	1	231	6H,41A,68I,83L,116A,132K,136M,154K,180D,225S
JQ846116	121	Spain	15-Feb-2007	genomic RNA	subtype: B	1	231	6M,15L,41T,83L,115V,148S,154K,225T,229K,230I
JQ846117	122	Spain	15-Feb-2007	genomic RNA	subtype: B	1	231	6M,41T,83L,115V,148S,154K,225T,229K,230I
JQ846118	123	Spain	24-May-2007	genomic RNA	subtype: B	1	231	6L,14P,27I,79D,83T,91V,98D,154K,178T,225S
JQ846119	124	Spain	21-May-2007	genomic RNA	subtype: B	1	231	10P,15L,87Q,91V,96V,116A,120H,136M,147L,148A,172V,200H,225S
JQ846121	126	Spain	12-Jan-2007	genomic RNA	subtype: B	1	231	6L,83L,87Q,91V,96I,116A,136M,154K,160S,171V,225A
JQ846122	127	Spain	14-Sep-2006	genomic RNA	subtype: B	1	231	6L,14P,27I,41M,83L,91P,110N,116A,132K,136M,148V,180D,210S
JQ846123	128	Spain	05-Feb-2007	genomic RNA	subtype: B	1	231	6L,15L,83L,110N,116A,148V,180D,230I
JQ846124	129	Spain	17-May-2007	genomic RNA	subtype: B	1	231	6L,15L,27I,41T,83L,91V,116A,120G,148V,154K,180D,225S
JQ846126	130	Spain	28-Feb-2007	genomic RNA	subtype: B	1	231	6L,83L,87Q,91V,96I,116A,120H,128D,136M,178T,208G
JQ846127	131	Spain	19-Apr-2006	genomic RNA	subtype: B	1	231	6S,41T,50H,83L,116A,118I,154K,180D,199R,208G,225S
JQ846128	132	Spain	04-Apr-2007	genomic RNA	subtype: B	1	231	6L,14P,15L,41T,83L,180D,208G
JQ846129	133	Spain	16-Oct-2006	genomic RNA	subtype: B	1	231	6L,27I,41T,71D,83M,86I,96I,116T,120S,123A,148V,180D,216S
JQ846130	134	Spain	09-Mar-2007	genomic RNA	subtype: B	1	231	6L,14P,17A,83L,91V,120S,123S,148V,180D
JQ846131	135	Spain	01-Feb-2007	genomic RNA	subtype: B	1	231	6L,14P,27I,41T,83L,91V,110N,120S,123A,154K,178T,194S
JQ846132	136	Spain	03-Aug-2007	genomic RNA	subtype: B	1	231	6L,27I,83L,87Q,120S,148V,180D
JQ846133	137	Spain	26-Jan-2006	genomic RNA	subtype: B	1	231	6L,15L,27I,83L,86A,87Q,91V,96I,98D,116A,120H,148V,154K,178T
JQ846136	14	Spain	29-Jul-1993	genomic RNA	subtype: B	1	231	6L,27I,83L,148V
JQ846150	17	Spain	28-Jun-1993	genomic RNA	subtype: B	1	231	6M,41T,83T,91V,180D
JQ846151	18	Spain	13-Jul-1993	genomic RNA	subtype: B	1	231	6L,15L,27I,41A,83L,116A,132K,136M,148V,170R,172V,177D,178A,210A,216P,225A
JQ846152	19	Spain	22-Jun-1993	genomic RNA	subtype: B	1	231	6L,27I,36I,41T,71D,83L,87Q,91V,96I,116A,128D,148V,180D,199R,208G,225A
JQ846153	2	Spain	09-Jun-1993	genomic RNA	subtype: B	1	231	6L,83L,178T
JQ846159	25	Spain	27-Sep-1993	genomic RNA	subtype: B	1	231	6L,15L,27I,83L,91V,148V,178T
JQ846161	27	Spain	07-Oct-1993	genomic RNA	subtype: B	1	231	27I,36I,83L,91V,120H,128D,148V,177G,178T
JQ846162	28	Spain	23-Jul-1993	genomic RNA	subtype: B	1	231	6L,148V,180D
JQ846165	30	Spain	24-Sep-1993	genomic RNA	subtype: B	1	231	6L,27I,83L,91V,148V,180D
JQ846167	32	Spain	01-Jun-1993	genomic RNA	subtype: B	1	231	6M,14P,27I,75D,83L,87Q,91V,96I,110N,116A,120H
JQ846168	33	Spain	23-Sep-1993	genomic RNA	subtype: B	1	231	6L,83L
JQ846169	34	Spain	02-Dec-1993	genomic RNA	subtype: B	1	231	6L,83L,91V,120H,128D,136M,148S,154K,178T,225A
JQ846172	37	Spain	10-Sep-1993	genomic RNA	subtype: B	1	231	91V,98D,120S
JQ846175	4	Spain	27-Sep-1993	genomic RNA	subtype: B	1	231	6L,14P,83L,180D
JQ846176	40	Spain	16-Nov-1993	genomic RNA	subtype: B	1	231	6L,27I,83L,148V
JQ846177	41	Spain	02-Jun-1993	genomic RNA	subtype: B	1	231	6L,14P,41T,58I,83L,86A,87Q,96I,116T,141T,208G
JQ846178	42	Spain	07-Jul-1993	genomic RNA	subtype: B	1	231	6V,14P,83L,110N,116A
JQ846179	43	Spain	24-Dec-1993	genomic RNA	subtype: B	1	231	6L,79D,83L,87Q,91V,120S,136M,230I
JQ846180	44	Spain	19-Oct-1993	genomic RNA	subtype: B	1	231	6L,83L,194S
JQ846182	46	Spain	25-Mar-1993	genomic RNA	subtype: B	1	231	6L,83L,154K,180D
JQ846184	48	Spain	07-May-1993	genomic RNA	subtype: B	1	231	6M,83L,154K,170R
JQ846187	50	Spain	23-Mar-1993	genomic RNA	subtype: B	1	231	6L,27I,36I,83L,148V,177C,178T
JQ846190	53	Spain	15-Jan-1993	genomic RNA	subtype: B	1	231	83L,120H,154K
JQ846191	54	Spain	29-Sep-1993	genomic RNA	subtype: B	1	231	6L,75D,83L,180D,194S
JQ846192	55	Spain	10-Dec-1993	genomic RNA	subtype: B	1	231	6L,27I,83L,91V,148V,180D,230I
JQ846201	63	Spain	10-Dec-1993	genomic RNA	subtype: B	1	231	6T,11I,83L,91V,120H,148V,154K,171V
JQ846203	65	Spain	16-Jul-1993	genomic RNA	subtype: B	1	231	6L,15L,27I,41T,83L,87Q,91V,148A,200I,208G,225S
JQ846208	7	Spain	09-Sep-1993	genomic RNA	subtype: B	1	231	6L,27I,83L,148V,180D,225S
JQ846209	70	Spain	04-Jun-1993	genomic RNA	subtype: B	1	231	75D,83L,86P,87Q,91V,98D,120S,154K,194S,200I
JQ846210	71	Spain	06-May-1993	genomic RNA	subtype: B	1	231	6L,14P,41A,44A,83L,91V,96I,116A,120S,124T,148V,180D
JQ846211	72	Spain	18-Nov-1993	genomic RNA	subtype: B	1	231	6M,83L,136M
JQ846212	73	Spain	22-Jun-1993	genomic RNA	subtype: B	1	231	6L,83L,120H,194S
JQ846213	74	Spain	11-Nov-1993	genomic RNA	subtype: B	1	231	6L,15L,41T,83L,160S
JQ846214	75	Spain	17-Nov-1993	genomic RNA	subtype: B	1	231	6L,15L,41T,75D,83L,91V,116A,148S,180D,208G
JQ846221	81	Spain	20-Jul-1993	genomic RNA	subtype: B	1	231	6L,83L,91V,154K,178T
JQ846222	82	Spain	23-Dec-1993	genomic RNA	subtype: B	1	231	83L,120H,148V,180D
JQ846225	85	Spain	16-Feb-1993	genomic RNA	subtype: B	1	231	6L,41A,83M,120S,154K,170R,194S
JQ846229	89	Spain	15-Jul-1993	genomic RNA	subtype: B	1	231	6L,27I,44A,83L,91V,148V,178T
JQ846235	94	Spain	09-May-2007	genomic RNA	subtype: B	1	231	6L,14P,44A,83L,91V,110N,116A,136M,154K,180D
JQ846236	95	Spain	13-Sep-2007	genomic RNA	subtype: B	1	231	6L,154K
JQ846237	96	Spain	19-Sep-2007	genomic RNA	subtype: B	1	231	6L,14P,15L,52I,83L,87Q,91V,96I,116A,120H,132K,136I,154K,160S,180D,225S
JQ846238	97	Spain	09-Aug-2007	genomic RNA	subtype: B	1	231	6L,14P,41T,83L,87Q,96V,116T,136M,154K,180D,199R
JQ846239	98	Spain	15-May-2007	genomic RNA	subtype: B	1	231	6L,45D,83L,87Q,91V,98D,120S,154K,171V,180D

Genbank References: capsid (p24)

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