<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Dowling (2016) Forty-one near full-length HIV-1 sequences from Kenya reveal an epidemic of subtype A and A-containing recombinants AIDS 16 (13), 1809-1820 (2002) 1.58e-152 41 41 Naive PBMC Direct PCR Molecular epidemiology

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AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
AF45705200KE_KER2008Kenyagenomic DNAsubtype: A12316A,11I,14S,15L,27I,30R,31G,54M,58I,83L,86A,87Q,92P,96I,98D,111P,116T,128D,148V,154K,169F,171V,178T,183G,200S,203R,207T,208G,225S
AF45705300KE_KER2009Kenyagenomic DNAsubtype: A12316A,11I,14T,15V,27I,44A,50G,58I,71D,83Q,92P,111T,120S,148V,162K,169F,178T,203R,208G,225S,229K,230I
AF45705400KE_KER2010Kenyagenomic DNAsubtype: C12316L,15L,27I,41T,71D,83L,91N,92P,116A,120S,148V,169F,178T,187D,203R,208G,217S
AF45705500KE_KER2012Kenyagenomic DNAsubtype: A12316A,11I,14S,15L,27I,54M,58I,71D,83L,91P,96L,111P,120G,128D,148V,154K,169F,171V,178T,183G,191I,200S,203R,207A,208G
AF45705600KE_KER2017Kenyagenomic DNAsubtype: A/C/D recombinant12316A,14P,15M,27I,29D,54M,58I,71D,83L,92P,110N,120G,128D,148V,154K,169F,178T,183G,207T,208G,210S,225S
AF45705700KE_KER2018Kenyagenomic DNAsubtype: A12316A,8R,11I,14S,15L,18K,23*,27I,54M,58I,60K,61R,71D,79K,80*,83L,86A,89R,96I,97K,100K,101R,106R,111T,116A,117*,118I,120G,128D,133*,137R,148V,153V,154K,156R,169F,171I,173K,180D,183G,184*,200S,203R,207A,208G,229K
AF45705800KE_KER2021Kenyagenomic DNAsubtype: A/D recombinant12316A,11I,14S,15L,27I,31G,33N,54M,58I,71D,92P,96I,111T,116A,120S,128D,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G,210S
AF45706000KE_KISII5009Kenyagenomic DNAsubtype: A2/D recombinant12316A,23*,60E,71D,80*,83L,92P,100K,116R,120S,124V,127R,128D,132T,136I,148V,156R,169F,184*,187D,200S,206R,208E,225S,229K
AF45706100KE_KISII5011Kenyagenomic DNAsubtype: A/C recombinant12316L,15L,17A,31S,41T,71D,83L,86A,87Q,96I,116T,120S,148V,154K,169F,178T,180D,187D,200N,203R,208G,210S,225S
AF45706600KE_KNH1144Kenyagenomic DNAsubtype: A12316A,11I,14T,15L,27I,54M,58I,71D,83T,92P,111P,120S,128D,148V,154K,169F,178T,183G,200S,203R,207T,208G
AF45706700KE_KNH1199Kenyagenomic DNAsubtype: A12316A,15V,27I,54M,58I,71D,83L,92P,111P,120G,128D,148V,154K,169F,178T,191I,194S,200S,203R,208G
AF45706800KE_KNH1207Kenyagenomic DNAsubtype: A12316A,11I,14P,15L,27I,31G,48I,54M,58I,71D,83L,92P,111P,115V,120G,128D,148V,154K,169F,171V,177G,180D,200S,203R,207Q,208G,210S
AF45706900KE_KNH1209Kenyagenomic DNAsubtype: A12316A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,187D,200S,203R,208G,225S
AF45707000KE_KNH1211Kenyagenomic DNAsubtype: A12316A,11I,14S,15L,27I,45D,54M,58I,71D,83L,92P,111P,120G,148V,154K,169F,178T,183G,200S,203R,207T,208G
AF45707100KE_KNH1214Kenyagenomic DNAsubtype: A12312V,6A,8R,11I,14N,15L,23*,27I,54M,58I,71D,83L,92P,100K,111P,117*,120S,128D,133*,137E,148V,154K,156R,162K,169F,178T,183G,184*,200S,203R,206R,207T,208E,213K,229K
AF45707700KE_KSM4024Kenyagenomic DNAsubtype: A12316A,11I,14S,15L,27I,54M,58I,71D,92P,111I,120S,124V,128D,148V,154K,169F,178T,183G,200S,203R,207A,208G
AF45707800KE_KSM4028Kenyagenomic DNAsubtype: A/D recombinant12316A,10W,11A,14S,15V,27I,58V,71D,83L,111P,116A,120A,128D,148V,154K,169F,171I,177G,200S,203R,204S,208G,210S
AF45707900KE_KSM4030Kenyagenomic DNAsubtype: A12316A,14S,15L,27I,58I,71D,83L,92P,109G,111P,120G,128D,148V,154K,169F,171A,178T,183G,200S,203R,207A,208G,211I
AF45708000KE_MSA4069Kenyagenomic DNAsubtype: A12316A,11I,14P,15L,27I,31S,54M,58I,71D,83L,86A,87Q,92P,96I,111P,116I,120A,128D,148V,154K,169F,171V,178T,183G,187D,200S,203R,208G,210S,225S
AF45708100KE_MSA4070Kenyagenomic DNAsubtype: A12316T,12Y,14S,15V,19I,27I,54M,58I,71D,83L,87Q,92P,96L,111P,120S,128D,148V,154K,169F,178T,183G,200S,203R,207T,208G,225S
AF45708200KE_MSA4071Kenyagenomic DNAsubtype: A/D recombinant12316A,11I,14N,15L,27I,54M,58I,71D,92P,111P,116Q,120S,128D,148V,154K,169F,171A,178T,180D,187D,200S,207S,208G,225S
AF45708300KE_MSA4072Kenyagenomic DNAsubtype: A12316A,11I,15L,31G,54M,58I,71D,83L,92P,111I,128D,148V,154K,169F,178T,200A,207S,208G,225S
AF45708400KE_MSA4076Kenyagenomic DNAsubtype: A12316A,11I,14S,15L,27I,54M,58I,71D,83L,87Q,92P,111I,120G,128D,148V,154K,169F,171A,178T,180D,183R,200S,207V,208G
AF45708500KE_MSA4077Kenyagenomic DNAsubtype: C/D recombinant12316L,14P,15L,27I,31G,33N,41T,71D,83L,91P,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G
AF45708600KE_MSA4079Kenyagenomic DNAsubtype: A12316A,11I,14N,15L,27I,37V,54M,58I,71D,83L,92P,111P,115L,116Q,120S,128D,148V,169F,171A,178T,183G,200S,207S,208G,225S
AF45708700KE_MSA4080Kenyagenomic DNAsubtype: A/C recombinant12316A,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207A,208G
AF45708800KE_NKU3004Kenyagenomic DNAsubtype: A/A2/D recombinant12316A,14P,15L,19I,71D,87Q,92P,96L,110N,120G,148V,169F,178T,187D,200S,203R,208G,225S
AF45708900KE_NKU3005Kenyagenomic DNAsubtype: A12316A,11I,14N,15L,27I,30R,45D,50H,54M,58I,67E,71D,83L,86I,111P,116A,120G,128D,148V,154K,169F,171A,178T,183G,191I,200S,203R,207S,208G
AF45709100KE_NKU3007Kenyagenomic DNAsubtype: A12316A,11I,14S,15L,27I,31V,54M,58I,71D,80*,83L,86A,92Q,100K,111P,120G,128D,133*,148V,154K,169F,178T,180D,184*,200S,203R,207A,208G,229K
AF45709001KE_NKU3006Kenyagenomic DNAsubtype: D12316L,15L,27I,41T,83L,86I,91N,116A,120S,148V,154K,180D,225S
AF45705199KE_KER2003Kenyagenomic DNAsubtype: A2/D recombinant12316A,10W,33N,50S,54S,83L,87Q,116A,120G,148V,187D,200S,208G,225S
AF45705999KE_KISII5003Kenyagenomic DNAsubtype: A/D recombinant12316L,27I,71D,79D,83M,91V,120S,148V,180D
AF45706299KE_KNH1043Kenyagenomic DNAsubtype: A/G recombinant12316A,11I,14P,15L,27I,31G,33N,54M,58I,68I,71D,79D,83L,92P,111P,120G,123S,128D,148V,154K,169F,171C,178T,183G,200S,203R,207T,208G
AF45706399KE_KNH1088Kenyagenomic DNAsubtype: A12316V,14S,15L,27I,54M,58I,71D,83L,91P,96L,111P,120G,128D,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G,210S
AF45706499KE_KNH1097Kenyagenomic DNAsubtype: A/C recombinant12316L,15L,27I,41T,50A,71D,83L,91V,96V,116T,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
AF45706599KE_KNH1135Kenyagenomic DNAsubtype: A12316A,11T,12Y,14T,15M,27I,54M,58I,71D,83L,86I,91V,111P,115L,116Q,120S,128D,148V,153V,154K,169F,171I,178T,180D,191I,200S,203R,208G,210S,225S
AF45707299KE_KSM4001Kenyagenomic DNAsubtype: A2/D recombinant12316A,10W,33N,83L,91V,116A,120S,148V,187D,200S
AF45707399KE_KSM4015Kenyagenomic DNAsubtype: A/D recombinant12316A,14T,15L,27I,54M,58I,83I,91N,120S,148V,180D,207S,208G
AF45707499KE_KSM4017Kenyagenomic DNAsubtype: A/D recombinant12316A,11I,14S,15L,23*,27I,54M,58I,71D,80*,83L,89R,92P,111P,117*,120G,128D,148V,154K,156R,169F,178T,183G,191I,200S,203R,207T,208G,229K
AF45707599KE_KSM4021Kenyagenomic DNAsubtype: A12316A,14T,15L,27I,54M,58I,71D,83L,91V,92P,111P,120S,128D,148V,154K,169F,178T,180D,187D,199R,200S,203R,207A,208G,225S,230I
AF45707699KE_KSM4023Kenyagenomic DNAsubtype: A12316A,15V,27I,54M,58I,71D,80*,83L,92P,111P,117*,120G,128D,148V,154K,156R,169F,178T,183G,184*,200S,203R,207A,208E,222R,223R,229K

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