Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Muenchhoff (2014)	Evaluation of the NucliSens EasyQ v2.0 Assay in Comparison with the Roche Amplicor v1.5 and the Roche CAP/CTM HIV-1 Test v2.0 in Quantification of C-Clade HIV-1 in Plasma	PLoS ONE 9 (8), E103983 (2014)	2.14e-166	71	44	Naive	Plasma	Molecular clones; SGS	Miscellaneous

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Accession	IsolateName	Country	MolType	Source	Note	FirstAA	LastAA	MutList
KJ948566	Sample1	South Africa	genomic DNA	female host	subtype: C	1	231	6L,27I,41T,71D,83L,101E,116A,124V,128D,148V,154K,169F,178T,180D,187D,189F,190V,191I,203R,210S
KJ948575	Sample10	South Africa	genomic DNA	female host	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,116A,118T,148V,154K,169F,172F,178T,180D,187D,203R,208G
KJ948576	Sample11	South Africa	genomic DNA	female host	subtype: C	1	231	6L,27I,41T,71D,83L,91V,96L,116A,120S,124V,128D,148V,154K,169F,170R,178T,180D,187D,203R,210S
KJ948577	Sample12	South Africa	genomic DNA	female host	subtype: C	1	231	6L,41T,54S,58A,71D,83L,115V,116A,118T,120G,123S,148V,169F,178T,180D,187D,203R,208G,225S
KJ948578	Sample13	South Africa	genomic DNA	female host	subtype: C	1	231	6L,15L,27I,41T,50T,71D,83L,86A,91N,116A,120S,128D,132K,136M,148V,149R,154K,169F,178T,180D,187D,203R,208G
KJ948579	Sample14	South Africa	genomic DNA	female host	subtype: C	1	231	6L,27I,41T,71D,83I,102R,105T,107E,113N,114K,115L,116P,120G,124V,128D,148V,169F,171C,178T,187D,203R,210S
KJ948580	Sample15	South Africa	genomic DNA	female host	subtype: C	1	231	6L,15L,27I,41T,71D,83L,87P,91V,96L,116T,124V,148V,169F,178T,203R,208G
KJ948582	Sample16	South Africa	genomic DNA	female host	subtype: C	1	231	6L,15L,27I,41T,71D,83L,86I,116A,124V,128D,148V,169F,178T,200N,203R,208G
KJ948583	Sample17	South Africa	genomic DNA	female host	subtype: C	1	231	6L,14P,15L,28K,41T,51N,71D,83L,86I,91V,96L,101E,116A,124V,128D,132K,143K,148V,163N,166N,169F,173K,178T,180N,187D,203R,208G,213K
KJ948585	Sample19	South Africa	genomic DNA	female host	subtype: C	1	231	6L,16T,31G,33N,71D,79K,83L,91V,116N,118I,120G,123S,148V,153V,154K,169F,171I,178T,180D,208S
KJ948567	Sample2	South Africa	genomic DNA	female host	subtype: C	1	231	6L,14T,15L,31G,33N,41T,71D,83L,96L,110S,116A,124V,128D,148V,154K,169F,171V,178T,187D,207T,208G
KJ948586	Sample20	South Africa	genomic DNA	female host	subtype: C	1	231	6L,14N,15L,41T,68I,71D,96I,116T,120T,128D,148V,169F,180D,187D,200I,204G,208G,225S
KJ948587	Sample21	South Africa	genomic DNA	female host	subtype: C	1	231	6L,14S,15L,27I,41T,71D,83L,116A,120A,123A,128D,148V,154K,169F,178T,180D,203R,208Q
KJ948588	Sample22	South Africa	genomic DNA	female host	subtype: C	1	231	6L,15L,27I,31G,33N,41T,71D,83T,87Q,91V,96L,98D,115V,128D,148V,154K,169F,178T,180D,187D,203R,208G
KJ948589	Sample23	South Africa	genomic DNA	female host	subtype: C	1	231	6L,27I,41T,71D,83I,91V,96I,116T,124V,148V,169F,178T,180D,187D,199R,208G
KJ948590	Sample24	South Africa	genomic DNA	female host	subtype: C	1	231	6L,11I,15L,16T,27I,41T,50A,71D,83L,91V,116A,120S,128D,148V,154K,180D,187D,207S,208G
KJ948591	Sample25	South Africa	genomic DNA	female host	subtype: C	1	231	6L,27I,41T,71D,83L,96L,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
KJ948593	Sample26	South Africa	genomic DNA	female host	subtype: C	1	231	6L,27I,41V,45D,54S,71D,83T,86L,87Q,92P,93Q,116A,120G,124V,148V,154K,169F,178T,187D,200I,204G,208G,225S
KJ948594	Sample27	South Africa	genomic DNA	female host	subtype: C	1	231	6L,14P,15L,27I,29D,41T,71D,83L,92P,93A,110N,116A,120G,128D,148V,169F,178T,180D,190F,203R,208G,225S
KJ948595	Sample28	South Africa	genomic DNA	female host	subtype: C	1	231	6L,27I,41I,71D,83M,116A,120S,124V,132K,136M,148V,169F,178T,203R,208G
KJ948596	Sample29	South Africa	genomic DNA	female host	subtype: C	1	231	41T,71D,96L,116A,124V,148V,154K,169F,171A,178T,180D,203R,204G,208G
KJ948568	Sample3	South Africa	genomic DNA	female host	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,96L,112A,116A,120S,124V,128D,148V,169F,178T,187D,203R,208G,210S
KJ948597	Sample30	South Africa	genomic DNA	female host	subtype: C	1	231	6L,27I,41T,71D,91A,116A,120G,124V,148V,154K,169F,178T,181I,187D,203R,208G
KJ948598	Sample31	South Africa	genomic DNA	female host	subtype: C	1	231	3I,6L,15L,27I,41T,45D,50S,71D,83L,91V,111T,116A,120G,128D,148V,154K,169F,177S,178T,187D,200A,203R,208G
KJ948599	Sample32	South Africa	genomic DNA	female host	subtype: C	1	231	6L,15L,27I,41T,71D,83I,91V,115V,116A,120S,124V,148V,154K,169F,178T,187D,200I,204G,208G
KJ948600	Sample33	South Africa	genomic DNA	female host	subtype: C	1	231	3L,6L,27I,41T,71D,83L,86A,87Q,91V,96I,116T,124D,148V,154K,169F,178T,180D,187D,203R,208G,225S
KJ948601	Sample34	South Africa	genomic DNA	female host	subtype: C	1	231	6L,11I,27I,33N,71D,83L,96L,115V,116A,120A,124V,128D,148V,187D,207T,208G,211I
KJ948602	Sample35	South Africa	genomic DNA	female host	subtype: C	1	231	6L,15L,27I,31G,33N,41T,52M,71D,83L,86A,87Q,91V,96I,98D,115V,116Q,120S,128D,148V,154K,169F,178T,187D,203R,208G
KJ948603	Sample36	South Africa	genomic DNA	female host	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,110N,116A,120G,128D,148V,169F,178T,180D,187D,199R,208G
KJ948604	Sample37	South Africa	genomic DNA	female host	subtype: C	1	231	6L,31G,33N,48P,70N,71D,83I,91L,116T,120S,128D,148V,169F,178T,200S,203R,208G,213K,225S
KJ948605	Sample38	South Africa	genomic DNA	female host	subtype: C	1	231	6L,27I,41T,50P,71D,83I,107S,116A,120S,124V,128D,148V,154K,160S,169F,171A,178T,180D,187D,208G,210N
KJ948606	Sample39	South Africa	genomic DNA	female host	subtype: C	1	231	4R,6L,27I,41T,50S,59I,71D,83L,86A,87Q,91V,98D,112E,116A,120G,123A,124V,128D,148V,154K,169F,171V,178T,180D,203R,210S,225S
KJ948569	Sample4	South Africa	genomic DNA	female host	subtype: C	1	231	6L,27I,41T,71D,75D,83L,116A,120S,128D,148V,169F,178T,187D,203R,208G
KJ948607	Sample40	South Africa	genomic DNA	female host	subtype: C	1	231	6L,14S,27I,41T,71D,83L,91V,116A,120S,124V,128D,148V,154K,169F,171C,178T,180D,203R,210S
KJ948608	Sample42	South Africa	genomic DNA	female host	subtype: C	1	231	6L,15L,27I,33N,41T,71D,83L,87Q,96I,116T,120S,148V,154K,169F,178T,180D,187D,203R,208G,225S
KJ948609	Sample43	South Africa	genomic DNA	female host	subtype: C	1	231	6L,15L,27I,41T,71D,83L,91V,96L,116A,124V,148V,154K,169F,171V,178T,180D,187D,210S
KJ948610	Sample44	South Africa	genomic DNA	female host	subtype: C	1	231	6L,27I,31G,36I,45D,54S,71D,83L,86A,98D,116A,120G,123A,128D,148V,154K,169F,178T,187D,200N,203R,208G
KJ948611	Sample46	South Africa	genomic DNA	female host	subtype: C	1	231	6A,14P,27I,41T,71D,83I,91V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G
KJ948612	Sample47	South Africa	genomic DNA	female host	subtype: C	1	231	6L,15L,27I,41T,71D,83M,110N,116A,120S,124V,148V,154K,169F,171C,178T,180D,187D,210S
KJ948613	Sample48	South Africa	genomic DNA	female host	subtype: C	1	231	14P,27I,41T,71D,83L,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G,210S
KJ948570	Sample5	South Africa	genomic DNA	female host	subtype: C	1	231	6L,15M,27I,41T,68L,71D,83L,86A,87Q,91V,96I,110N,116A,120S,128D,148V,169F,170R,187D,200A,203R,208G,225S
KJ948614	Sample50	South Africa	genomic DNA	female host	subtype: C	1	231	6L,15L,27I,41T,45D,54S,71D,83M,91V,116A,120G,148V,154K,169F,178T,180D,187D,200I,203R,204G,208G,225S
KJ948615	Sample51	South Africa	genomic DNA	female host	subtype: C	1	231	6L,27I,41T,50A,71D,83T,91V,116A,120G,123A,124V,128D,148V,154K,169F,180D,187D,203R,208G,225S
KJ948616	Sample52	South Africa	genomic DNA	female host	subtype: C	1	231	6L,15M,27I,41T,56F,71D,83L,87Q,91V,96L,116A,120S,128D,148V,154K,160S,169F,177S,187D,191I,207S,208G
KJ948617	Sample53	South Africa	genomic DNA	female host	subtype: C	1	231	6L,27I,36I,41T,71D,83L,87Q,96I,116T,120S,124M,128D,148V,154K,169F,178T,180D,187D,203R,207A,208G,225S
KJ948618	Sample54	South Africa	genomic DNA	female host	subtype: C	1	231	6L,27I,41T,71D,83L,91V,111P,116A,120G,121T,124V,128D,148V,154K,163E,169F,178T,180D,187D,203R,208G,225T,230I
KJ948619	Sample56	South Africa	genomic DNA	female host	subtype: C	1	231	6L,14S,15L,27I,41T,71D,87Q,91V,116T,120S,124V,148V,169F,178T,180D,187D,200I,204G,207Q,208G
KJ948620	Sample57	South Africa	genomic DNA	female host	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83I,86I,87Q,91L,92P,96I,110N,116H,120T,128D,148V,154K,169F,180D,187D,203R,208G,210P,225S
KJ948621	Sample58	South Africa	genomic DNA	female host	subtype: C	1	231	6L,14P,27I,41T,71D,83L,91V,116A,120S,124V,128D,148V,169F,178T,180D,183H,203R
KJ948622	Sample59	South Africa	genomic DNA	female host	subtype: C	1	231	6L,27I,31G,33N,41T,71D,83L,91A,115V,116A,120S,128D,148V,169F,178T,180D,187D,203R,208G,210S
KJ948571	Sample6	South Africa	genomic DNA	female host	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,116N,120G,121A,121A_NGA,122Q,128D,148V,154K,169F,178T,180D,187D,203R,208G,226L
KJ948623	Sample61	South Africa	genomic DNA	female host	subtype: C	1	231	6V,27I,36I,41T,71D,83L,91V,96L,115V,116Q,128D,148V,154K,169F,171I,178T,180D,187D,203R,207Q,208G,210S
KJ948624	Sample62	South Africa	genomic DNA	female host	subtype: C	1	231	6P,11I,27I,41T,50G,58I,71D,83M,91V,116A,120S,148V,154K,169F,174S,177S,178T,187D,203R,208G,210S,225S
KJ948625	Sample64	South Africa	genomic DNA	female host	subtype: C	1	231	3G,6L,15L,27I,44A,50G,71D,83L,91V,116A,120S,128D,148V,169F,171V,178T,192P,207S,208G
KJ948626	Sample65	South Africa	genomic DNA	female host	subtype: C	1	231	6A,41T,71D,83I,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
KJ948627	Sample66	South Africa	genomic DNA	female host	subtype: C	1	231	6L,14P,15L,17A,41T,71D,75D,83I,116A,120G,124V,148V,169F,178T,180D,187D,203R,208G,225S
KJ948628	Sample67	South Africa	genomic DNA	female host	subtype: C	1	231	6L,15L,27I,41T,44A,45D,54S,58I,71D,83L,96L,116A,120S,124V,148V,169F,171A,178T,180D,187D,199R,208G,210N,225S
KJ948629	Sample68	South Africa	genomic DNA	female host	subtype: C	1	231	6L,11A,12Y,14N,15L,27I,41T,71D,83L,91V,116A,120S,124V,128D,136M,148V,169F,170R,178T,180D,203R,210S,225S
KJ948630	Sample69	South Africa	genomic DNA	female host	subtype: C	1	231	6V,27I,41T,71D,96I,116T,120A,148V,149T,154K,169F,178T,180D,187D,203R,208G
KJ948572	Sample7	South Africa	genomic DNA	female host	subtype: C	1	231	6L,27I,41T,50T,54S,71D,83L,91V,96L,112A,116A,128D,148V,169F,178T,187D,203R,208G
KJ948631	Sample71	South Africa	genomic DNA	female host	subtype: C	1	231	6L,27I,41T,71D,83L,110S,116A,120S,124V,128D,148V,169F,171V,178T,180D,203R,210S,225S
KJ948632	Sample72	South Africa	genomic DNA	female host	subtype: C	1	231	6L,27I,41T,71D,75D,83L,112N,116A,120S,124V,148V,169F,178T,187D,203R,208G
KJ948633	Sample74	South Africa	genomic DNA	female host	subtype: C	1	231	6L,14V,27I,71D,83L,116A,128D,148V,154K,169F,171I,178T
KJ948634	Sample75	South Africa	genomic DNA	female host	subtype: C	1	231	6L,14P,27I,36I,41T,71D,83L,110N,116A,124V,128D,148V,154K,169F,171V,178T,180D,187D,203R,210S,225S
KJ948635	Sample76	South Africa	genomic DNA	female host	subtype: C	1	231	6L,15L,27I,41T,54S,71D,83L,86A,87Q,91Y,92P,93A,96L,116A,120H,148V,169F,187D,208G,225S
KJ948636	Sample78	South Africa	genomic DNA	female host	subtype: C	1	231	6L,14P,15L,27I,41T,71D,83L,91V,113D,116A,120S,148V,154K,169F,178T,187D,203R,208G
KJ948637	Sample79	South Africa	genomic DNA	female host	subtype: C	1	231	6L,14C,15L,27I,41T,71D,83M,110S,116A,120S,124V,148V,169F,178T,180D,208G
KJ948573	Sample8	South Africa	genomic DNA	female host	subtype: C	1	231	6L,15L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,203R,208G,210S
KJ948581	Sample80	South Africa	genomic DNA	female host	subtype: C	1	231	6L,14S,27I,41T,71D,83L,116A,120S,124V,128D,148V,154K,169F,171V,178T,180D,187D,203R,210S,225S
KJ948592	Sample81	South Africa	genomic DNA	female host	subtype: C	1	231	6L,10S,11I,27I,41T,50G,71D,83L,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S
KJ948574	Sample9	South Africa	genomic DNA	female host	subtype: C	1	231	6L,14P,16A,41T,71D,83L,91A,116A,120S,128D,148V,169F,178T,187D,203R,204G,208G

Genbank References: capsid (p24)

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