<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Novitsky (2016) Human immunodeficiency virus type 1 subtype C molecular phylogeny: consensus sequence for an AIDS vaccine design? J. Virol. 76 (11), 5435-5451 (2002) 1.57e-148 42 42 Naive Cultured PBMC Molecular clones Molecular epidemiology

Download sequences

AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
AF44308800BW0762.1Botswanagenomic DNAsubtype: C123114S,15L,27I,41T,71D,83L,116A,120S,124V,148V,154K,169F,178T,187D,203R,208G,210S,225S
AF44308900BW0768.20Botswanagenomic DNAsubtype: C12316L,15L,27I,41T,71D,86A,91V,110N,116A,120A,124V,148V,169F,178T,180D,187D,203R,208G,225S
AF44309000BW0874.21Botswanagenomic DNAsubtype: C12316L,13N,14P,27I,41T,71D,91V,116A,120S,128D,148V,154K,169F,178T,187D,203R,204G,208G,210S,225S
AF44309100BW1471.27Botswanagenomic DNAsubtype: C12316A,14S,27I,41T,50S,71D,77V,83L,87Q,98D,115V,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
AF44309200BW1616.2Botswanagenomic DNAsubtype: C12316L,27I,41T,71D,83M,87Q,91V,98D,116A,120S,124V,148V,154K,169F,178T,180D,187D,203R,208G,225S
AF44309300BW1686.8Botswanagenomic DNAsubtype: C12316L,27I,31G,33N,41T,53H,71D,83L,110N,115V,116A,120S,128D,148V,154K,169F,178T,180D,187D,200A,203R,208G,225S
AF44309400BW1759.3Botswanagenomic DNAsubtype: C12316L,27I,41T,50S,71D,83L,116A,120S,124V,128D,148V,169F,178T,187D,191I,208G,210S
AF44309500BW1773.2Botswanagenomic DNAsubtype: C12316L,14P,27I,41T,71D,83L,91V,116T,120S,124V,128D,148V,154K,169F,171V,178T,180D,187D,203R,210S,225S
AF44309600BW1783.5Botswanagenomic DNAsubtype: C12316L,27I,41T,50G,71D,83L,87Q,91V,96I,116T,120S,128D,135V,148V,154K,169F,177S,178T,187D,191I,203R,207Q,208G,210S
AF44309700BW1795.6Botswanagenomic DNAsubtype: C12316L,27I,29D,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,207S,208G,210S,225S
AF44309800BW1811.3Botswanagenomic DNAsubtype: C12316A,27I,41T,44P,71D,83L,116A,128D,148V,154K,169F,178T,180D,203R,208G
AF44309900BW1859.5Botswanagenomic DNAsubtype: C12316L,27I,41T,71D,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G,225S
AF44310000BW1880.2Botswanagenomic DNAsubtype: C12316L,14P,15L,27I,41T,71D,83L,91V,98D,116T,120S,128D,135V,148V,154K,169F,178T,187D,203R,208G,210S,225S
AF44310100BW1921.13Botswanagenomic DNAsubtype: C12316L,14S,27I,41T,71D,83L,96L,116A,124V,128D,148V,154K,169F,177S,187D,203R,208G,225S,230A
AF44310200BW2036.1Botswanagenomic DNAsubtype: C12316L,27I,36I,41T,71D,83L,91N,92P,93A,116A,120S,128D,148V,169F,178T,180D,187D,203R,208G
AF44310300BW2063.6Botswanagenomic DNAsubtype: C12316L,27I,41T,71D,83L,91A,112A,116A,120S,128D,148V,154K,169F,177S,178T,185V,187D,203R,208G,210S
AF44310400BW2087.2Botswanagenomic DNAsubtype: C12316A,14T,27I,41T,71D,83L,91V,116A,128D,148V,154K,169F,178T,180D,187D,207S,208G
AF44310500BW2127.214Botswanagenomic DNAsubtype: C12316L,15L,27I,41T,71D,83L,109T,116N,120S,148V,154K,168I,169F,178T,180D,203R,207S,208G,209V,216S,219R,225S
AF44310600BW2128.3Botswanagenomic DNAsubtype: C12316L,14P,15L,27I,41T,52S,71D,116A,120S,128D,148V,169F,178T,180D,187K,203R,212V,225S
AF44310700BW2276.7Botswanagenomic DNAsubtype: C123114P,15L,41T,71D,83L,91V,116A,120S,123A,128D,139D,148V,154K,169F,178T,180D,187D,203R,208G
AF44310800BW3819.3Botswanagenomic DNAsubtype: C12316L,14N,27I,41T,71D,83L,91V,115V,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G
AF44310900BW3842.8Botswanagenomic DNAsubtype: C12316L,31G,33N,41T,71D,87Q,91V,96I,110N,116T,120S,135V,148V,169F,178T,180D,203R,208G,210S
AF44311000BW3871.3Botswanagenomic DNAsubtype: C12314R,6L,27I,41T,48A,71D,83L,116D,148V,154K,169F,178T,180D,187G,203R,208G
AF44311100BW3876.9Botswanagenomic DNAsubtype: C12316L,14S,15L,27I,41T,71D,83I,91V,98D,116A,120S,124V,148V,154K,169F,178T,180D,187D,208G
AF44311200BW3886.8Botswanagenomic DNAsubtype: C12316L,27I,41T,71D,83L,116A,124V,128D,148V,154K,169F,170R,178T,180D,187D,203R,208G
AF44311300BW3891.6Botswanagenomic DNAsubtype: C12316L,14S,15L,27I,36I,41T,71D,83L,91V,110N,116N,120A,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
AF44311400BW3970.2Botswanagenomic DNAsubtype: C12316L,14P,16A,27I,31N,41T,54S,58A,71D,83L,96L,116A,124V,128D,135V,148V,169F,178T,180D,187D,203R,205I,208G,210S,225S
AF44311500BW5031.1Botswanagenomic DNAsubtype: C12316L,27I,28G,33N,36I,39I,41T,50R,71D,83L,91V,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,194G,200N,203R,208G
AF44307496BWMO1.5Botswanagenomic DNAsubtype: C12316L,27I,41T,51I,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G,210S,225S
AF44307596BWMO3.2Botswanagenomic DNAsubtype: C12316L,28Q,31G,33N,41T,71D,83M,91V,107S,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G
AF44307698BWMC12.2Botswanagenomic DNAsubtype: C12316V,14P,27I,41T,53T,62R,71D,83L,91V,107S,110N,116A,120S,128D,148V,154K,169F,178T,183G,187D,191I,203R,208G,225S
AF44307798BWMC13.4Botswanagenomic DNAsubtype: C12316L,15L,27I,41T,71D,83L,87Q,91V,96I,116A,120R,124V,148V,154K,160S,169F,178T,179R,187D,203R,208G,210S
AF44307898BWMC14.a3Botswanagenomic DNAsubtype: C12316L,27I,31G,33N,41T,71D,83L,91V,98D,115V,120S,128D,148V,154K,169F,171C,178T,183D,203R,204S,207T,208G,225S
AF44307998BWMO14.10Botswanagenomic DNAsubtype: C123127I,41T,71D,83T,91V,116A,120S,124V,148V,169F,178T,180D,187D,203R,208G,225S
AF44308098BWMO18.d5Botswanagenomic DNAsubtype: C12316L,10V,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S,225S
AF44308198BWMO36.a5Botswanagenomic DNAsubtype: C12316L,15P,27I,41T,71D,83L,91V,116A,120S,128D,136M,148V,169F,178T,187D,203R,208G
AF44308298BWMO37.d5Botswanagenomic DNAsubtype: C12316L,27I,41T,71D,83L,87Q,96I,108N,116A,124V,128D,148V,169F,178T,187D,203R,208G,210S
AF44308399BW3932.12Botswanagenomic DNAsubtype: C12316L,14S,15L,27I,41T,71D,83T,91V,116Q,120S,128D,148V,169F,178T,180D,203R,208G,225S
AF44308499BW4642.4Botswanagenomic DNAsubtype: C12316L,27I,41T,71D,83L,91V,115V,116T,120S,124V,128D,148V,169F,178T,187D,203R,208G
AF44308599BW4745.8Botswanagenomic DNAsubtype: C12312V,6L,27I,41T,71D,83I,91V,116N,120G,128D,136M,148V,154K,169F,178T,186A,187D,203R,204G,208G,225S
AF44308699BW4754.7Botswanagenomic DNAsubtype: C12316L,71D,96I,116T,148V,154K,169F,177S,178T,180D,187D,203R,208G,210S,225S
AF44308799BWMC16.8Botswanagenomic DNAsubtype: C12316L,41T,71D,83T,116A,120S,124V,148V,154K,169F,180D,187D,203R,208G,210S,211I,225S,231S

Database

Resources

Team