Genbank References: capsid (p24)

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Genbank References: capsid (p24)

Authors	Title	Citation	E-value	# in Gb	#Pts	ART	Source	Cloning	StudyType
Manak (2012)	Pilot Studies for Development of an HIV Subtype Panel for Surveillance of Global Diversity	AIDS Res. Hum. Retroviruses 28 (6), 594-606 (2012)	1.92e-166	77	59	Mixed	Cultured Plasma	SGS	Molecular epidemiology

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Accession	IsolateName	Country	Coll Date	MolType	Note	FirstAA	LastAA	MutList
JN687618	BP00002_LH01	South Africa	16-Oct-2007	genomic RNA	regular blood donor;subtype: C	1	231	6A,27I,41T,71D,83L,87Q,96I,116A,148V,154K,169F,178T,187D,200S,203R,208G,210S
JN687619	BP00002_LH02	South Africa	16-Oct-2007	genomic RNA	regular blood donor;subtype: C	1	231	6A,27I,41T,71D,83L,87Q,96I,116A,148V,154K,169F,178T,187D,200S,203R,208G,210S
JN687620	BP00002_LH03	South Africa	16-Oct-2007	genomic RNA	regular blood donor;subtype: C	1	231	6A,27I,41T,71D,83L,87Q,96I,116A,148V,154K,169F,178T,187D,200S,203R,208G,210S
JN687621	BP00002_LH04	South Africa	16-Oct-2007	genomic RNA	regular blood donor;subtype: C	1	231	6A,27I,41T,71D,83L,87Q,96I,116A,148V,154K,169F,178T,187D,200S,203R,208G,210S
JN687622	BP00002_LH06	South Africa	16-Oct-2007	genomic RNA	regular blood donor;subtype: C	1	231	6A,27I,41T,71D,83L,87Q,96I,116A,148V,154K,169F,178T,187D,200S,203R,208G,210S
JN687623	BP00002_LH07	South Africa	16-Oct-2007	genomic RNA	regular blood donor;subtype: C	1	231	6A,27I,41T,71D,83L,87Q,96I,116A,148V,154K,169F,178T,187D,200S,203R,208G,210S
JN687624	BP00002_LH08	South Africa	16-Oct-2007	genomic RNA	regular blood donor;subtype: C	1	231	6A,27I,41T,71D,83L,87Q,96I,116A,148V,154K,169F,178T,187D,200S,203R,208G,210S
JN687625	BP00002_LH09	South Africa	16-Oct-2007	genomic RNA	regular blood donor;subtype: C	1	231	6A,27I,41T,71D,83L,87Q,96I,116A,148V,154K,169F,178T,187D,200S,203R,208G,210S
JN687626	BP00002_LH10	South Africa	16-Oct-2007	genomic RNA	regular blood donor;subtype: C	1	231	6A,27I,41T,71D,83L,87Q,96I,116A,148V,154K,169F,178T,187D,200S,203R,208G,210S
JN687627	BP00002_LH11	South Africa	16-Oct-2007	genomic RNA	regular blood donor;subtype: C	1	231	6A,27I,41T,71D,83L,87Q,96I,116A,148V,154K,169F,178T,187D,200S,203R,208G,210S
JN687628	BP00005_LH01	South Africa	03-Apr-2007	genomic RNA	blood donor;subtype: C	1	231	6A,11M,27I,41T,71D,87Q,96V,116A,120A,148V,154K,169F,178T,180D,187D,203R,210S,225S
JN687629	BP00008_LH01	South Africa	28-Sep-2007	genomic RNA	blood donor;subtype: C	1	231	6A,14P,27I,41T,71D,83L,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G
JN687630	BP00008_LH02	South Africa	28-Sep-2007	genomic RNA	blood donor;subtype: C	1	231	6A,14P,27I,41T,71D,83L,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G
JN687631	BP00008_LH03	South Africa	28-Sep-2007	genomic RNA	blood donor;subtype: C	1	231	6A,14P,27I,41T,71D,83L,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G
JN687632	BP00008_LH04	South Africa	28-Sep-2007	genomic RNA	blood donor;subtype: C	1	231	6A,14P,27I,41T,71D,83L,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G
JN687633	BP00008_LH05	South Africa	28-Sep-2007	genomic RNA	blood donor;subtype: C	1	231	6A,14P,27I,41T,71D,83L,89GR,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G
JN687634	BP00008_LH06	South Africa	28-Sep-2007	genomic RNA	blood donor;subtype: C	1	231	6A,14P,27I,41T,71D,83L,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G
JN687635	BP00008_LH07	South Africa	28-Sep-2007	genomic RNA	blood donor;subtype: C	1	231	6A,14P,27I,41T,71D,83L,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G
JN687636	BP00008_LH08	South Africa	28-Sep-2007	genomic RNA	blood donor;subtype: C	1	231	6A,14P,27I,41T,71D,83L,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G
JN687637	BP00008_LH09	South Africa	28-Sep-2007	genomic RNA	blood donor;subtype: C	1	231	6A,14P,27I,41T,71D,83L,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G
JN687638	BP00008_LH10	South Africa	28-Sep-2007	genomic RNA	blood donor;subtype: C	1	231	6A,14P,27I,41T,71D,83L,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G
JN687639	BP00009_SUP_LH01	South Africa	19-Mar-2007	genomic RNA	blood donor;subtype: C	1	231	6L,27I,41T,71D,75D,83L,86T,91N,92Q,96I,116T,120S,128D,148V,169F,178T,187D,203R,208G
JN687640	BP00010_LH02	South Africa	30-May-2007	genomic RNA	blood donor;subtype: C	1	231	6L,14S,15L,27I,31G,41T,45D,54S,58V,71D,83L,115M,116A,118I,128D,148V,154K,169F,171V,178T,180D,187D,203R,210S,225S
JN687641	BP00012_LH01	South Africa	01-Jul-2008	genomic RNA	lapsed donor;subtype: C	1	231	6L,27I,36I,41T,71D,83L,91V,115V,116A,118I,120G,123S,128D,148V,169F,178T,187D,203R,208G,225S
JN687642	BP00014_LH01	South Africa	04-Aug-2008	genomic RNA	regular blood donor;subtype: C	1	231	6L,14V,15M,27I,41T,71D,91V,116N,120S,148V,154K,169F,178T,180D,187D,203R,208G,218G,225S
JN687643	BP00016_LH01	South Africa	11-Feb-2008	genomic RNA	regular blood donor;subtype: C	1	231	6L,27I,36I,41T,71D,83L,86I,91V,110N,116A,120S,124V,128D,148V,169F,171V,178T,180D,203R,210S,225S
JN687644	BP00016_LH03	South Africa	11-Feb-2008	genomic RNA	regular blood donor;subtype: C	1	231	6L,27I,36I,41T,71D,83L,86I,91V,110N,116A,120S,124V,128D,148V,169F,171V,178T,180D,203R,210S,225S
JN687645	BP00016_LH04	South Africa	11-Feb-2008	genomic RNA	regular blood donor;subtype: C	1	231	6L,27I,36I,41T,71D,83L,86I,91V,110N,116A,120S,124V,128D,148V,169F,171V,178T,180D,203R,210S,225S
JN687646	BP00018_LH01	South Africa	05-Aug-2008	genomic RNA	lapsed donor;subtype: C	1	231	6H,27I,41T,71D,86T,87Q,91V,96I,116T,120S,148V,154K,169F,178T,183H,187D,203R,208G
JN687647	BP00019_LH01	South Africa	03-Apr-2008	genomic RNA	new donor;subtype: C	1	231	6L,27I,41T,71D,83L,91V,116Q,120S,128D,148V,154K,169F,171C,177S,178T,203R,207S,208G
JN687648	BP00023_LH01	South Africa	21-Apr-2008	genomic RNA	new donor;subtype: C	1	231	6L,14P,15L,27I,31G,33N,41T,71D,91Q,110N,115V,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G,225S
JN687649	BP00025_LH02	South Africa	21-Aug-2008	genomic RNA	new donor;subtype: C	1	231	6L,27I,41T,45D,50S,54S,71D,83L,92P,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S
JN687650	BP00028_LH01	South Africa	23-Aug-2008	genomic RNA	regular blood donor;subtype: C	1	231	6L,27I,41T,71D,83L,91V,116A,118I,120G,128D,148V,169F,178T,187D,199R,203R,208G,225S
JN687651	BP00029_LH01	South Africa	14-Mar-2007	genomic RNA	blood donor;subtype: C	1	231	6L,27I,41T,54S,71D,83L,112A,116A,120S,148V,169F,178T,187D,203R,208G,225S
JN687652	BP00029_LH02	South Africa	14-Mar-2007	genomic RNA	blood donor;subtype: C	1	231	6L,27I,41T,54S,71D,83L,112A,116A,120S,148V,169F,178T,187D,203R,208G,211IL,225S
JN687653	BP00034_LH01	South Africa	21-May-2008	genomic RNA	regular blood donor;subtype: C	1	231	6L,15L,27I,41T,50S,54S,71D,83L,91P,107S,116A,120S,128D,148V,154K,160S,169F,171A,178T,180D,200I,204G,207Q,208G,225S
JN687654	BP00035_LH01	South Africa	24-Jan-2007	genomic RNA	blood donor;subtype: C	1	231	6A,13T,14P,16T,27I,31N,41T,71D,83L,110N,116A,120G,128D,148V,154K,169F,180D,187D,203R,208G
JN687655	BP00040_LH01	Brazil	19-Feb-2007	genomic RNA	subtype: C	1	231	6L,14P,16A,17A,41T,71D,83L,91V,96V,120G,148V,154K,169F,178T,187D,200S,203R,208G
JN687656	BP00044_LH01	Brazil	01-May-2007	genomic RNA	subtype: BF	1	231	6M,41T,83L,148S,154K,180D
JN687657	BP00047_LH01	Brazil	03-Dec-2007	genomic RNA	subtype: B	1	231	6L,83L,91V,160S
JN687658	BP00047_LH02	Brazil	03-Dec-2007	genomic RNA	subtype: B	1	231	6L,83L,91V,160S
JN687659	BP00048_SUP_LH01	Greece	15-Sep-2000	genomic RNA	subtype: CRF04_CPX	1	231	6A,14T,15M,27I,44A,45D,54C,58I,71D,83T,86A,91V,92Q,96V,120S,148V,169F,171V,178T,179P,191I,200S,207T,208G
JN687660	BP00049_SUP_LH01	Greece	15-Sep-2000	genomic RNA	subtype: CRF04_CPX	1	231	6A,14T,15M,27I,44A,45D,54C,58I,71D,83T,86A,91V,92Q,110N,120S,148V,169F,171V,178T,191I,200S,207T,208G,225S
JN687661	BP00049_SUP_LH03	Greece	15-Sep-2000	genomic RNA	subtype: CRF04_CPX	1	231	6A,10IM,14T,15M,27I,44A,45D,54C,58I,71D,83T,86A,91V,92Q,110N,120S,148V,169F,171V,178T,191I,200S,207T,208G,225S
JN687662	BP00052_SUP_LH01	Greece	20-Feb-2004	genomic RNA	subtype: CRF04_CPX	1	231	6A,14T,15M,27I,54M,58I,71D,83T,92P,96I,120S,124V,148V,169F,171C,178T,187D,200S,207T,208G,225S
JN687663	BP00052_SUP_LH02	Greece	20-Feb-2004	genomic RNA	subtype: CRF04_CPX	1	231	6A,14T,15M,27I,54M,58I,71D,83T,92P,96I,120S,124V,148V,169F,171C,178T,187D,200S,207T,208G,225S
JN687664	BP00053_SUP_LH01	Greece	11-Aug-2004	genomic RNA	subtype: CRF04_CPX	1	231	6A,15M,27I,41T,54M,58I,71D,78V,83L,92P,120S,128D,148V,154K,169F,171C,178T,191I,200S,207T,208G
JN687777	BP00054_gag	USA	10-Jan-2006	genomic RNA	subtype: B	1	231	6L,15L,29EK,83L,116A,170R,208G
JN687665	BP00055_LH01	USA	21-Feb-2006	genomic RNA	subtype: B	1	231	6L,15L,27I,83L,120H,148V,154K
JN687666	BP00055_LH02	USA	21-Feb-2006	genomic RNA	subtype: B	1	231	6L,15L,27I,83L,120H,148V,154K
JN687667	BP00055_LH03	USA	21-Feb-2006	genomic RNA	subtype: B	1	231	6L,15L,27I,83L,120H,148V,154K
JN687668	BP00055_LH04	USA	21-Feb-2006	genomic RNA	subtype: B	1	231	6L,15L,27I,83L,120H,148V,154K
JN687669	BP00055_LH05	USA	21-Feb-2006	genomic RNA	subtype: B	1	231	6L,15L,27I,83L,120H,148V,154K
JN687670	BP00055_LH06	USA	21-Feb-2006	genomic RNA	subtype: B	1	231	6L,15L,27I,83L,120H,148V,154K
JN687671	BP00055_LH07	USA	21-Feb-2006	genomic RNA	subtype: B	1	231	6L,15L,27I,83L,120H,148V,154K
JN687672	BP00055_LH08	USA	21-Feb-2006	genomic RNA	subtype: B	1	231	6L,15L,27I,83L,120H,148V,154K
JN687673	BP00055_LH09	USA	21-Feb-2006	genomic RNA	subtype: B	1	231	6L,15L,27I,83L,120H,148V,154K
JN687674	BP00055_LH10	USA	21-Feb-2006	genomic RNA	subtype: B	1	231	6L,15L,27I,83L,120H,148V,154K
JN687675	BP00057_LH01	USA	19-Jul-2006	genomic RNA	subtype: B	1	231	6L,15L,27I,83L,110N,116N,120G,148V
JN687676	BP00058_LH07	USA	13-Aug-2007	genomic RNA	subtype: B	1	231	6M,14P,15L,27I,31S,33N,41T,83L,86P,87Q,96I,110N,116T,120S,135V,154K,180D,208G,210S,225S
JN687677	BP00061_LH03	USA	18-Sep-2008	genomic RNA	subtype: B	1	231	6L,14T,15M,27I,83L,87Q,91V,96L,116A,120H,191I,208G,225S
JN687678	BP00063_LH01	USA	17-Aug-2007	genomic RNA	subtype: B	1	231	6L
JN687679	BP00064_LH02	USA	05-Sep-2007	genomic RNA	subtype: B	1	231	6L,14P,27I,41T,83L,91V,120S,123A,148V,180D,199R
JN687680	BP00067_LH01	USA	13-Nov-2007	genomic RNA	subtype: B	1	231	6L,14S,15L,83M,115V,116A,120S,124V,148V,180D
JN687681	BP00067_LH02	USA	13-Nov-2007	genomic RNA	subtype: B	1	231	6L,14S,15L,83M,115V,116A,120S,124V,148V,180D
JN687682	BP00067_LH03	USA	13-Nov-2007	genomic RNA	subtype: B	1	231	6L,14S,15L,83M,115V,116A,120S,124V,148V,180D
JN687683	BP00067_LH04	USA	13-Nov-2007	genomic RNA	subtype: B	1	231	6L,14S,15L,83M,115V,116A,120S,124V,148V,180D
JN687684	BP00067_LH07	USA	13-Nov-2007	genomic RNA	subtype: B	1	231	6L,14S,15L,83M,115V,116A,120S,124V,148V,180D
JN687685	BP00067_LH09	USA	13-Nov-2007	genomic RNA	subtype: B	1	231	6L,14S,15L,83M,115V,116A,120S,124V,148V,180D
JN687686	BP00067_LH10	USA	13-Nov-2007	genomic RNA	subtype: B	1	231	6L,14S,15L,83M,115V,116A,120S,124V,148V,180D
JN687687	BP00067_LH11	USA	13-Nov-2007	genomic RNA	subtype: B	1	231	6L,14S,15L,83M,109GS,115V,116A,120S,124V,148V,180D
JN687688	BP00067_LH12	USA	13-Nov-2007	genomic RNA	subtype: B	1	231	6L,14S,15L,83M,115V,116A,120S,124V,148V,180D,229GR
JN687689	BP00067_LH13	USA	13-Nov-2007	genomic RNA	subtype: B	1	231	6L,14S,15L,83M,115V,116A,120S,124V,148V,180D
JN687690	BP00069_LH01	USA	28-May-2008	genomic RNA	subtype: B	1	231	6L,27I,83L,148V
JN687691	BP00074_LH01	Poland	12-Apr-2008	genomic RNA	subtype: B	1	231	6L,15L,41T,83L,91V,136I,148V,180D
JN687692	BP00078_LH02	Cameroon		genomic RNA	subtype: CRF02_AG	1	231	6A,14P,15M,27I,31G,41T,48V,54M,58I,71D,83T,92P,110N,120G,135V,148V,169F,178T,180D,194S,203R,208G
JN687693	BP00079_LH01	Cameroon	23-Sep-2008	genomic RNA	subtype: CRF02_AG	1	231	6A,11T,14N,15M,27I,54M,58I,71D,83L,92P,120S,128N,143K,148V,154K,169F,178T,183G,187D,200S,207T,208G

Genbank References: capsid (p24)

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