<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
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Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Lazaro (2011) Molecular Characterization of HIV-1 CRF01_AE in Mekong Delta, Vietnam, and Impact of T-Cell Epitope Mutations on HLA Recognition (ANRS 12159) PLoS ONE 6 (10), E26244 (2011) 3.08e-159 68 125 Naive Plasma Direct PCR HLA

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AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
HQ542548AG-M10_GAGViet Nam: Mekong are05-Oct-2008genomic DNA12316A,15L,31G,33N,54M,58I,87HQ,92P,96L,120DG,123A,128D,148V,178T,200A,203R,207ST,208G,225S,230I
HQ542549AG-M13_GAGViet Nam: Mekong are05-Oct-2008genomic DNA12316A,8R,10AP,14P,15V,31G,33N,54M,58I,87HQ,92P,120S,128D,148V,178T,200S,207T,208G,210S,225S
HQ542550AG-M14_GAGViet Nam: Mekong are05-Oct-2008genomic DNA12316A,11IT,14P,15L,27I,31G,33N,54V,58I,87HQ,92P,120S,128D,146R,148V,154K,178T,204S,207Q,208G,225S
HQ542551AG-M15_GAGViet Nam: Mekong are05-Oct-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,71D,92P,128D,148V,149G,154K,178T,191I,200S,207T,208G,225S
HQ542552AG-M16_GAGViet Nam: Mekong are05-Oct-2008genomic DNA12316A,9PQ,10LM,14P,15L,31G,33N,54M,58I,83IV,87HP,92P,120S,128D,148AITV,178T,200A,203R,207T,208G,216IT,225S
HQ542553AG-M18_GAGViet Nam: Mekong are05-Oct-2008genomic DNA12316A,14P,15L,18S,31G,33N,54M,58I,92P,120NS,128D,148V,178T,200S,207IMT,208G,209AS,225S
HQ542554AG-M19_GAGViet Nam: Mekong are05-Oct-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,120NS,123PS,128D,148V,178T,191IV,200S,207T,208G
HQ542555AG-M20_GAGViet Nam: Mekong are05-Oct-2008genomic DNA12316A,11I,14P,15L,31G,33N,54M,58I,79D,92P,111I,120S,128D,148V,178T,191I,200S,203R,207T,208G,225S
HQ542556AG-M21_GAGViet Nam: Mekong are05-Oct-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,71D,78AV,83IV,92P,110N,120S,128D,148V,149G,180D,183Q,191I,200S,207S,208G,210S,225S
HQ542557AG-M24_GAGViet Nam: Mekong are05-Oct-2008genomic DNA12316A,14P,15L,31G,33N,58I,92P,105AS,120S,128D,148V,159EK,178ST,183H,200S,207T,208G,222GS,225S
HQ542545AG-M3_GAGViet Nam: Mekong are05-Oct-2008genomic DNA12316A,14P,15L,31G,33N,58I,83L,92P,110N,148V,175G,178T,200S,207IT,208G,225S
HQ542546AG-M5_GAGViet Nam: Mekong are05-Oct-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,110N,120S,128D,148V,178ST,200S,207T,208G,225S
HQ542547AG-M6_GAGViet Nam: Mekong are05-Oct-2008genomic DNA12313I,6A,14P,15L,31G,33N,54M,58I,92P,120G,128DE,129IN,148V,178T,200S,207V,208G,225S
HQ542603DN-M10_GAGViet Nam: Mekong are16-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,96LM,128DE,148V,178T,200S,207T,208G,225S
HQ542604DN-M11_GAGViet Nam: Mekong are16-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,83I,92P,110N,120S,128D,148V,178T,187DE,200S,207T,208G,210S,225S
HQ542605DN-M12_GAGViet Nam: Mekong are16-Jun-2008genomic DNA12316A,10P,14P,15L,27IV,31G,33N,54M,58I,78AV,87Q,92P,120S,128D,148V,178T,200S,207T,208G,225S
HQ542606DN-M15_GAGViet Nam: Mekong are16-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,107CST,120S,128D,178T,200S,207T,208G,225S
HQ542607DN-M16_GAGViet Nam: Mekong are16-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,71D,83IV,92P,106GR,120NS,128D,148V,149G,178T,200S,207T,208G,225S
HQ542608DN-M18_GAGViet Nam: Mekong are16-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,120NS,128D,148V,178T,199EK,200S,207S,208G,218*C,225S
HQ542609DN-M21_GAGViet Nam: Mekong are16-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,83AV,92P,128D,148V,178T,200S,207T,208G,225S
HQ542610DN-M22_GAGViet Nam: Mekong are16-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,87HQ,92P,96LM,120NS,123PS,128D,148V,178T,204S,207T,208G,225S
HQ542611DN-M24_GAGViet Nam: Mekong are16-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,82M,92P,128D,148V,156GR,178T,200S,206GR,207ST,208G,225S
HQ542612DN-M26_GAGViet Nam: Mekong are16-Jun-2008genomic DNA12316A,7QR,8R,14P,15L,31G,33N,36L,54M,58I,64AG,92P,128D,148V,178T,200S,207T,208G,225S
HQ542600DN-M3_GAGViet Nam: Mekong are16-Jun-2008genomic DNA12316A,14P,15L,18S,31G,33N,54M,58I,78V,83T,92P,120S,128D,143G,148V,178T,200S,203R,204AS,207T,208G,225S
HQ542601DN-M6_GAGViet Nam: Mekong are16-Jun-2008genomic DNA12316A,14P,15L,27I,31G,33N,54M,58I,96LM,112A,116A,128D,148V,178T,200S,207T,208G,225S
HQ542602DN-M7_GAGViet Nam: Mekong are16-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,59I,78V,83T,86IV,87Q,92P,96LM,128D,148I,178T,200S,207T,208G,225S
HQ542592DT-M12_GAGViet Nam: Mekong are18-Jun-2008genomic DNA32313Q,5Q,6S,8P,9K,10L,11P,13R,14Q,16X,27IV,31G,33N,54M,58I,83L,92P,94DG,115IV,120S,128D,148V,178T,200S,207T,208G,225S
HQ542593DT-M15_GAGViet Nam: Mekong are18-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,120S,128D,148V,165IV,178T,200S,207T,208G,225S
HQ542594DT-M16_GAGViet Nam: Mekong are18-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,120S,128D,148V,178T,193D,200S,207T,208G,225S
HQ542595DT-M17_GAGViet Nam: Mekong are18-Jun-2008genomic DNA12316A,14P,15L,31G,33KN,54M,58I,75DE,92P,128D,146N,148V,163DY,170KR,178T,200S,207T,208G,225S
HQ542596DT-M18_GAGViet Nam: Mekong are18-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,71D,92P,120S,148V,149G,204S,207T,208G,225S
HQ542597DT-M20_GAGViet Nam: Mekong are18-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,207T,208G,210S,225S
HQ542598DT-M22_GAGViet Nam: Mekong are18-Jun-2008genomic DNA12316T,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200S,207T,208G,225S
HQ542599DT-M25_GAGViet Nam: Mekong are18-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,83I,92P,96L,128D,148V,178T,200S,207T,208G,225S
HQ542588DT-M3_GAGViet Nam: Mekong are18-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,87Q,92P,96I,116A,128D,154K,178T,200S,207T,208G,225S
HQ542589DT-M4_GAGViet Nam: Mekong are18-Jun-2008genomic DNA12316A,11I,14P,15L,27I,31G,33N,54M,58I,83I,92P,111I,120S,128D,148V,178T,203R,204G,207AT,208G
HQ542590DT-M8_GAGViet Nam: Mekong are18-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,207ST,208G,225S
HQ542591DT-M9_GAGViet Nam: Mekong are18-Jun-2008genomic DNA12316A,10W,11T,14P,15L,31G,33N,54M,58I,67HQ,83L,92P,96I,120S,128D,148V,178T,200S,207T,208G,210S,225S
HQ542574TG-M1_GAGViet Nam: Mekong are25-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,120G,123A,128D,148V,178T,200S,203E,207T,208G
HQ542580TG-M11_GAGViet Nam: Mekong are25-Jun-2008genomic DNA12316A,8R,14P,15L,31G,33N,54M,58I,83L,92P,128D,148V,178T,200S,207T,208G,225S
HQ542581TG-M12_GAGViet Nam: Mekong are25-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,120S,123A,128D,148V,178T,200S,207T,208G
HQ542582TG-M14_GAGViet Nam: Mekong are25-Jun-2008genomic DNA12316A,14P,15L,27I,31G,33N,54M,58I,71D,79D,92P,116A,120G,123A,128D,148V,178T,191I,200S,207T,208G,225S
HQ542583TG-M17_GAGViet Nam: Mekong are25-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,120G,123AS,128D,148V,178T,200S,207T,208G,225S
HQ542584TG-M18_GAGViet Nam: Mekong are25-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,83IV,92P,110N,120S,128D,148V,178T,200S,207T,208G,225S
HQ542585TG-M19_GAGViet Nam: Mekong are25-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,115IV,120S,128D,148V,178T,200S,207T,208G,225S
HQ542586TG-M20_GAGViet Nam: Mekong are25-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,207T,208G,225S
HQ542587TG-M24_GAGViet Nam: Mekong are25-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,120S,128D,148V,178T,200S,207T,208G,225S
HQ542575TG-M3_GAGViet Nam: Mekong are25-Jun-2008genomic DNA12316A,14P,15L,31G,33N,41T,54M,58I,92P,120S,123A,128D,135V,148V,178T,200S,207T,208G,225S
HQ542576TG-M5_GAGViet Nam: Mekong are25-Jun-2008genomic DNA22313AV,5S,6AP,7L,8GV,9H,10LM,11ALPV,12HQ,13*PQS,14P,15IR,31G,33N,54M,58I,92P,110N,128D,148V,200S,207T,208G,225S
HQ542577TG-M6_GAGViet Nam: Mekong are25-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,83IV,92P,120S,148V,178T,183H,200S,207T,208G
HQ542578TG-M7_GAGViet Nam: Mekong are25-Jun-2008genomic DNA12316T,14P,15L,31G,33N,54M,58I,83L,92P,110N,128D,148V,178T,200A,207T,208G,225S
HQ542579TG-M9_GAGViet Nam: Mekong are25-Jun-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200S,207T,208G,225S
HQ542562VT-M10_GAGViet Nam: Mekong are06-Oct-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,120G,128D,148V,178T,200S,207T,208G,225S
HQ542563VT-M12_GAGViet Nam: Mekong are06-Oct-2008genomic DNA12316T,7LQ,12HY,14P,15IL,31G,33N,54M,58I,92P,120S,123AP,128DE,148V,178T,200S,207T,208G,225S
HQ542564VT-M14_GAGViet Nam: Mekong are06-Oct-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,128D,148V,178T,200S,207T,208G,210ST,225S
HQ542565VT-M15_GAGViet Nam: Mekong are06-Oct-2008genomic DNA12316A,8R,14P,15L,31G,33N,54M,58I,87Q,92P,110N,120S,128D,148V,178T,183H,200S,203R,207T,208G,225S
HQ542566VT-M16_GAGViet Nam: Mekong are06-Oct-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,66LM,83I,92P,107V,120S,128D,148V,178T,200AS,203R,204AT,207ST,208G,210ST,215LM,216IT,225S
HQ542567VT-M18_GAGViet Nam: Mekong are06-Oct-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,71D,83IV,92P,120G,123A,128D,168FV,182Y,183Y,184X,191DV,193K,194C,195DN,197DE,198CST,199X,200S,202IV,207T,208G,224HP,225S
HQ542568VT-M19_GAGViet Nam: Mekong are06-Oct-2008genomic DNA12316A,14P,15L,27IV,31G,33N,54M,58I,87HQ,92P,96LM,110N,120G,123A,128D,148V,178T,200S,207T,208G,225S
HQ542558VT-M2_GAGViet Nam: Mekong are06-Oct-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,63HQ,92P,120S,128D,148V,178T,200S,207T,208G,225S
HQ542569VT-M21_GAGViet Nam: Mekong are06-Oct-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,110N,128D,148V,178T,200S,207T,208G,225S
HQ542570VT-M22_GAGViet Nam: Mekong are06-Oct-2008genomic DNA12312IV,6AT,14P,15L,31G,33N,54M,58I,83LV,87HP,92AP,98DE,107ST,120NS,128DE,148V,178T,200S,207T,208G,225S
HQ542571VT-M23_GAGViet Nam: Mekong are06-Oct-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,92P,110N,128D,148V,165IV,178T,200S,207T,208G,225S
HQ542572VT-M24_GAGViet Nam: Mekong are06-Oct-2008genomic DNA12316A,7R,8R,14P,15L,20T,23G,31G,33N,39S,40S,54M,58I,92P,128D,148V,178T,200S,207T,208G,225S
HQ542573VT-M25_GAGViet Nam: Mekong are06-Oct-2008genomic DNA12316A,14P,15L,31G,33N,54M,58I,68IM,92P,120NS,128D,146R,148V,154K,178T,184RW,200S,202IL,207AST,208G,210ST,221MV,225S
HQ542559VT-M7_GAGViet Nam: Mekong are06-Oct-2008genomic DNA12316A,14P,15L,31G,33N,41T,54M,58I,67H,83AITV,87HQ,92P,120G,123A,128D,178T,200S,207R,208G,225S
HQ542560VT-M8_GAGViet Nam: Mekong are06-Oct-2008genomic DNA12316AP,7L,9H,13*Q,14P,31G,33N,54M,58I,92P,120S,123A,128D,148V,152N,178T,187DE,200S,202IL,207T,208G,225S
HQ542561VT-M9_GAGViet Nam: Mekong are06-Oct-2008genomic DNA12316A,8R,14P,15L,18S,31G,33N,54M,58I,92P,110N,120S,128D,148V,178T,180DE,183H,200S,207T,208G,225S

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