<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Toure-Kane (2016) Identification of all HIV type 1 group M subtypes in Senegal, a country with low and stable seroprevalence AIDS Res. Hum. Retroviruses 16 (6), 603-609 (2000) 3.74e-167 78 77 Naive PBMC Direct PCR Molecular epidemiology

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AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
AJ27454296SE-1018Senegalgenomic DNA12306A,11T,14S,15M,27I,41T,54M,58I,71D,83T,92P,120S,124V,135V,148V,169F,178T,180D,203R,208G,230I
AJ27454396SE-1029Senegalgenomic DNA52266L,27I,33N,44A,83L,91N,120S,148V,180D,205M,208G
AJ27454796SE-1047Senegalgenomic DNA52206A,14S,15M,27I,54M,58I,71D,91V,92P,113D,120S,128D,148S,169F,180D,190M,203R,208G
AJ27455196SE-1083Senegalgenomic DNA12316L,15L,27I,41T,71D,83L,110N,116A,120S,128D,148V,169F,178T,180D,203R,208G,230I
AJ27455396SE-1103Senegalgenomic DNA12314A,5D,6A,14S,15M,27I,41T,54M,58I,71D,83T,86I,91L,92P,110N,120S,148V,169F,178T,180D,200S,203R,208G,225T,226P,230I
AJ27455496SE-1109Senegalgenomic DNA12266L,14P,83L,87Q,91V,96I,110N,116A,120H,208G
AJ27454196SE-1116Senegalgenomic DNA1221215L,27I,33N,91V,96L,114R,120S,148V,178T,208G
AJ27455996SE-1121Senegalgenomic DNA922514P,15M,27I,41T,54M,58I,71D,87Q,92P,96I,110N,120S,135V,154K,169F,178T,200S,203R,208G,225S
AJ27456096SE-1124Senegalgenomic DNA12316A,11T,14N,27I,54M,58I,71D,83T,92P,115V,120S,124V,128D,148V,169F,178T,194S,200S,208G,230I,231W
AJ27456396SE-1142Senegalgenomic DNA12266A,10W,11T,14P,15M,27I,31G,33N,41T,54M,58I,71D,83T,91A,92P,110N,120S,135V,148V,169F,178T,187D,200S,203R,208G,225S
AJ27456596SE-1146Senegalgenomic DNA822714S,15M,27I,54M,58I,92P,120S,148V,178T,204S,208G
AJ27456696SE-1149Senegalgenomic DNA12276A,14S,26A,27I,41T,54M,58I,71D,92P,120S,124V,135V,154K,169F,178T,200S,203R,208G,221I
AJ27454497SE-1031Senegalgenomic DNA12276A,15V,27I,50H,71D,83I,86Q,87Q,91L,92P,96I,116R,120S,124V,148V,169F,178T,183G,203R,208G,225S
AJ27454597SE-1041Senegalgenomic DNA62196A,11L,15M,54M,58I,71D,83M,92P,120G,124V,131R,136P,148L,154K,163E,169F,178T,183G,191I,200S,203R,207A,208G
AJ27454697SE-1043Senegalgenomic DNA12246A,11T,14S,27I,54M,58I,71D,83I,92P,120S,135V,148V,169F,178T,200S,203R,208G
AJ27454897SE-1055Senegalgenomic DNA62266A,15M,27I,54M,58I,71D,92P,120S,131R,148V,154K,169F,178T,180D,191I,203R,208G,225S
AJ27455097SE-1078Senegalgenomic DNA62256C,7K,27I,54M,58I,59L,71D,87Q,92P,96I,98D,114R,115M,120S,131T,136P,148V,149G,169F,178T,208G,211I
AJ27455297SE-1090Senegalgenomic DNA12316L,15L,27I,41T,71D,83L,110N,116A,120S,128D,148V,169F,178T,180D,203R,208G,230I
AJ27455597SE-1113Senegalgenomic DNA1222214S,27I,54M,58I,71D,75D,92P,120S,135V,148V,169F,178T,200S,203R,208G,219P,221S
AJ27455697SE-1117Senegalgenomic DNA42316A,11T,14S,27I,31S,41T,54C,58I,71D,120S,135V,148V,169F,178T,200S,203R,208G,230I
AJ27455797SE-1119Senegalgenomic DNA721815L,27I,41T,71D,86I,105P,116Y,120S,128D,131P,148V,169F,176S,178T,187D,191I,192L,198S,203R,208G,210S
AJ27456297SE-1140Senegalgenomic DNA1022014P,27I,83L,86P,87Q,96I,98D,100T,110N,116R,120S,128D,148V,180D
AJ27456497SE-1145Senegalgenomic DNA22266A,14S,15L,27I,54M,58I,71D,83I,92P,120S,124V,131R,148V,169F,171C,200S,207I,208G
AJ27456797SE-1161Senegalgenomic DNA822511T,13L,14S,26A,27I,41A,54M,58I,71D,92P,120S,124V,128D,132K,142L,148V,169F,171A,178T,200G,207T,208G
AJ27456897SE-1171Senegalgenomic DNA12316A,11T,14P,15M,27I,41T,54M,58I,71D,83A,92P,120S,148V,149G,154K,169F,178T,187D,203R,208G,230I
AJ27456997SE-1176Senegalgenomic DNA32263M,6A,14P,15M,27I,36I,41T,54M,58I,71D,92P,110N,120S,135V,148V,169F,178T,187D,200S,203R,208G,225S
AJ27457097SE-1181Senegalgenomic DNA722071D,92P,116A,120S,124V,148V,154K,169F,178T,180D,187D,203R,208G,210S
AJ27457197SE-1183Senegalgenomic DNA62246A,11T,14S,15M,27I,54M,58I,71D,83T,87Q,92P,115V,120S,135V,148V,169F,178T,200S,203R,208G
AJ27457297SE-1189Senegalgenomic DNA42246L,12Y,27I,44A,46R,68I,71D,83L,91V,96I,116T,120S,132G,148V,154K,169F,177S,183S,187D,191I,207S,208G,210S,223R
AJ27457397SE-1197Senegalgenomic DNA12286A,14S,15M,27I,41T,54M,58I,71D,83T,92P,120S,124V,135V,148V,169F,178T,200S,203R,208G
AJ27457497SE-1207Senegalgenomic DNA52266L,27I,41T,83L,91N,120S,126L,142I,148V,180D,191I,208G,225V
AJ27457697SE-1210Senegalgenomic DNA12316A,14S,15M,27I,54M,58I,71D,75D,92P,120S,135V,148V,169F,171A,178T,180D,200S,203R,208G,210K,225S,226P,230I
AJ27457797SE-1216Senegalgenomic DNA32216A,14S,27I,54M,58I,71D,83I,92P,120S,124V,131R,148V,154K,169F,171C,183G,200S,203R,207T,208G
AJ27457897SE-1217Senegalgenomic DNA52266E,14S,26A,27I,41T,54M,58I,71D,83T,92P,120S,135V,148V,169F,178T,200S,203R,208G,225S
AJ27457997SE-1219Senegalgenomic DNA12316A,14S,15M,27I,54M,58I,71D,92P,120S,124V,148V,169F,178T,187D,200S,208G,225T,230I
AJ27458197SE-1228Senegalgenomic DNA62256C,14S,15M,27I,54M,58I,71D,83T,92P,113D,120S,148V,169F,178T,181L,187D,200S,208G,225S
AJ27458397SE-1254Senegalgenomic DNA12266A,27I,41T,58V,71D,92P,107A,120S,128D,148V,169F,171A,178T,200G,225S
AJ27458697SE-14FANNSenegalgenomic DNA62256L,14S,15L,31G,33N,41T,50L,71D,83L,86A,87Q,91V,94R,98D,114R,115M,116S,120S,124V,128D,131Q,136P,139Y,148V,154K,169F,171C,178T,180D,183H,187D,202F,203R,207S,208G,225E
AJ27458797SE-16FANNSenegalgenomic DNA52277A,83L,91V,98D,107S,120S,154K
AJ27459097SE-25FANNSenegalgenomic DNA52306L,14P,27I,41T,71D,86P,87Q,91V,96I,98D,116T,128D,148V,154K,169F,170R,178T,180D,187D,203R,208G,210S,225S,227E,228Q,229D
AJ27459297SE-31FANNSenegalgenomic DNA12296A,14T,15M,27I,54M,58I,71D,83I,91N,92P,120S,148V,169F,200S,203R,208G,217S,229E
AJ27459697SE-4HALDSenegalgenomic DNA822736I,48P,58A,71D,86P,87Q,91F,92P,93A,96I,116I,120S,148V,169F,178T,180D,187D,203R,208G,217S
AJ27460097SE-6HPDSenegalgenomic DNA32266A,11T,14S,15M,26A,27I,41T,54M,58I,71D,75D,83T,92P,120S,135V,148V,169F,178T,180D,200S,203R,208G
AJ27460497SE-7FANNSenegalgenomic DNA721714S,27I,54M,58I,71D,75D,83T,92P,120S,135V,148V,169F,177G,178T,190M,200S,208G
AJ27461597SE-7HPDSenegalgenomic DNA62266A,11T,14P,26A,27I,41T,50S,54M,58I,71D,83T,92P,110N,120G,124V,135V,148V,169F,178T,200S,203R,208G,225S
AJ27461297SE-9HPDSenegalgenomic DNA12315T,6L,14P,15L,44A,83L,86A,87Q,91H,92P,116A,148V,180D,208G,225S
AJ27461497SE-Ko1051Senegalgenomic DNA12306A,14S,15M,27I,54M,58I,71D,92P,120S,135V,154K,169F,178T,183H,200S,203R,208G
AJ27454998SE-106HPDSenegalgenomic DNA22246A,11I,14S,15M,27I,41T,54M,58I,71D,83T,92P,96I,120S,124V,131T,135V,148V,169F,178T,200S,203R,208G,219H
AJ27455898SE-111HPDSenegalgenomic DNA22316A,71D,83M,86Q,87P,96I,98D,116R,120S,148V,169F,171A,178T,183G,203R,207S,208G
AJ27456198SE-112HPDSenegalgenomic DNA922227I,33N,44A,83L,91V,120S,148V,187D,208G,215I,216Q,217P,219L,221I,222L
AJ27457598SE-120HPDSenegalgenomic DNA12156A,14S,15M,27I,41T,54M,58I,71D,75D,83T,87Q,92P,96I,98D,120S,135V,148V,169F,178T,187D,200S,208G
AJ27458098SE-1224Senegalgenomic DNA723175D,83L,120H
AJ27458898SE-21HALDSenegalgenomic DNA1123183L,136M
AJ27458998SE-22HALDSenegalgenomic DNA12186M,27I,120H,148V
AJ27459198SE-27HALDSenegalgenomic DNA42276A,10W,11T,14S,27I,41T,54M,58I,71D,83A,84N,92P,120S,124V,135V,148V,169F,178T,180D,203R,208G,225A
AJ27459498SE-42HPDSenegalgenomic DNA22256A,7K,14S,27I,54M,58I,71D,83T,92P,120S,124V,148V,169F,178T,194S,208G,216S,221E,222R,223R
AJ27459598SE-46HALDSenegalgenomic DNA12312K,6A,10P,11I,15V,27I,54M,58I,71D,91A,92P,120S,135V,148V,169F,171C,178T,180D,200I,204G,207T,208G,225S,226L,228Q,229E
AJ27459798SE-59HPDSenegalgenomic DNA12226L,83L,178T,209T,210P,216A
AJ27459898SE-61HPDSenegalgenomic DNA723114P,15L,27I,29D,54M,58V,71D,83L,92P,111P,120G,123A,128D,148V,154K,169F,171I,177C,180D,183G,187D,200S,207T,208G,225S
AJ27459998SE-63HPDSenegalgenomic DNA12306A,36I,71D,83I,86P,87Q,92P,96I,115M,116T,120S,148V,169F,178T,180D,187D,203R,208G
AJ27461698SE-65HALDSenegalgenomic DNA822914S,15M,27I,54M,58I,71D,92P,120S,135V,148V,169F,178T,200S,203R,208G
AJ27460198SE-72HPDSenegalgenomic DNA12266A,12Y,14S,15M,27I,33N,44A,48P,54M,58V,71D,83T,86A,87Q,92P,107A,116A,120G,123A,128D,148V,169F,171A,178T,183S,199R,204S,208G,225S
AJ27460298SE-74HALDSenegalgenomic DNA12276A,11T,14S,27I,41L,47T,54M,58I,71D,83T,92P,111I,120S,132K,135V,148V,154K,169F,178T,187D,200S,203R,208G
AJ27460398SE-79HALDSenegalgenomic DNA12316A,14S,15M,27I,41T,54M,58I,71D,83T,92P,120S,124V,135V,148V,169F,178T,200S,203R,208G,210N
AJ27460598SE-83HPDSenegalgenomic DNA62206V,14S,15M,27I,54M,58I,71D,83T,92P,120G,123A,135V,148V,169F,178T,180D,203R,208G
AJ27460798SE-87HALDSenegalgenomic DNA723111I,14S,15M,27I,41T,54M,58I,71D,91N,92P,120S,148V,169F,178T,200S,203R,208G,226P
AJ27461198SE-95HPDSenegalgenomic DNA12315T,6L,14P,15L,44A,83L,86A,87Q,91H,92P,116A,148V,180D,208G,225S
AJ27461398SE-Ko1212Senegalgenomic DNA12296A,14S,15L,27I,48A,54M,58V,71D,83I,92P,110S,120S,124V,128D,131R,148V,154K,169F,178T,200S,203R,208G
AJ25105698SE-MP1211Senegalgenomic DNAsubtype: AG-Ibng12316A,14S,27I,54M,58I,71D,79D,83T,92P,120S,128D,148V,169F,178T,194S,199R,208G,216S
AJ25105798SE-MP1213Senegalgenomic DNAsubtype: AG-Ibng12316A,11T,14S,15M,27I,54M,58I,71D,92P,120S,135V,148V,169F,178T,200S,203R,208G
AJ27458299SE-123HPDSenegalgenomic DNA12316A,14S,15M,27I,54M,58I,71D,92P,120G,124V,131R,148V,169F,171C,178T,199R,200S,203R,204G,207T,208G
AJ27458499SE-125HPDSenegalgenomic DNA12316A,14S,15L,27I,54M,58I,71D,91A,92P,120G,124V,128D,131R,148S,154K,169F,171C,178T,180D,194S,200S,203R,207T,208G
AJ27458599SE-128HPDSenegalgenomic DNA12305T,6A,11T,12Y,14S,15M,27I,54M,58I,71D,87Q,91L,92P,120S,169F,171A,178T,183H,203R,204G,208G
AJ27459399SE-42FANNSenegalgenomic DNA12266A,11I,14S,15M,27I,36I,41T,54M,58I,71D,92P,120S,124V,135V,148V,169F,178T,200S,203R,208G,210S,225C
AJ27460699SE-84HALDSenegalgenomic DNA12276A,11I,14S,15M,27I,54M,58I,71D,77V,92P,120S,135V,148V,169F,178T,183V,191I,203R,208G,216A,221X
AJ27460899SE-90HALDSenegalgenomic DNA1223115M,16K,24M,41T,54M,58I,71D,92P,120S,124V,135V,154K,169F,178T,180D,203R,208G,230L
AJ27460999SE-92HALDSenegalgenomic DNA22256A,14S,27I,54M,58I,71D,78V,83T,92P,120G,135V,148V,169F,171C,178T,200S,207S,208G,215I,223D,225A
AJ27461099SE-95HALDSenegalgenomic DNA22256A,14S,27I,54M,58I,71D,78V,83T,92P,120G,135V,148V,169F,171C,178T,200S,207S,208G,215I,223D,225A

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