| Accession | IsolateName | Country | Coll Date | Clone | MolType | Source | Note | FirstAA | LastAA | MutList |
|---|
| MK643538 | Pt1.1_S1052 | South Africa | 09-Aug-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,187D,188S,203R,208G,225S,229K |
| MK643539 | Pt1.1_S1053 | South Africa | 09-Aug-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,187D,188S,203R,208G,225S,229K |
| MK643540 | Pt1.1_S1054 | South Africa | 09-Aug-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,187D,188S,203R,208G,214V,225S,229K |
| MK643541 | Pt1.1_S1055 | South Africa | 09-Aug-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,187D,188S,203R,208G,225S,229K |
| MK643542 | Pt1.1_S1056 | South Africa | 09-Aug-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,187D,188S,203R,208G,225S,229K |
| MK643543 | Pt1.1_S1057 | South Africa | 09-Aug-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,187D,188S,203R,208G,225S,229K |
| MK643544 | Pt1.1_S1058 | South Africa | 09-Aug-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,187D,188S,203R,208G,225S,229K |
| MK643545 | Pt1.1_S1059 | South Africa | 09-Aug-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,187D,188S,203R,208G,225S,229K |
| MK643572 | Pt1.1_S1098 | South Africa | 09-Aug-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,187D,188S,203R,208G,225S,229K |
| MK643573 | Pt1.1_S1099 | South Africa | 09-Aug-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,187D,188S,203R,208G,225S,229K |
| MK643574 | Pt1.1_S1102 | South Africa | 09-Aug-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,187D,188S,203R,208G,225S,229K |
| MK643546 | Pt1.2_S1061 | South Africa | 18-Sep-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,187D,188S,203R,208G,225S,229K |
| MK643547 | Pt1.2_S1062 | South Africa | 18-Sep-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,187D,188S,203R,208G,225S,229K |
| MK643548 | Pt1.2_S1063 | South Africa | 18-Sep-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,187D,188S,203R,208G,225S,229K |
| MK643549 | Pt1.2_S1064 | South Africa | 18-Sep-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,187D,188S,203R,208G,225S,229K |
| MK643575 | Pt1.2_S1104 | South Africa | 18-Sep-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,187D,188S,203R,208G,225S,229K |
| MK643576 | Pt1.2_S1105 | South Africa | 18-Sep-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,187D,188S,203R,208G,225S,229K |
| MK643666 | Pt1.2_S1305 | South Africa | 18-Sep-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,187D,188S,203R,208G,225S,229K |
| MK643650 | Pt1.3_S1285 | South Africa | 18-Jan-2016 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,116A,120S,124V,148V,154K,169F,178T,187D,188S,203R,208G,225S,229K |
| MK643550 | Pt2.1_S1068 | South Africa | 17-May-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G |
| MK643551 | Pt2.2_S1069 | South Africa | 27-Jun-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G |
| MK643552 | Pt2.2_S1070 | South Africa | 27-Jun-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,8R,23*,27I,41T,71D,80*,83L,100K,101E,116A,117*,120G,124V,127R,128D,133*,148V,156R,169F,178T,180D,187D,203R,208E,223R |
| MK643553 | Pt2.2_S1071 | South Africa | 27-Jun-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G |
| MK643555 | Pt2.2_S1073 | South Africa | 27-Jun-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,18K,27I,28K,41T,71N,80*,81N,83L,116A,120G,124V,128D,132K,143K,148V,162K,163N,166N,169F,178T,180N,184*,187D,203R,208G,212K,214I |
| MK643556 | Pt2.2_S1074 | South Africa | 27-Jun-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,8R,23*,27I,41T,60R,61R,71D,80*,83L,116A,117*,120G,124V,128D,133*,148V,156R,159K,169F,178T,180D,187D,203R,206R,208E,223R |
| MK643672 | Pt2.2_S1311 | South Africa | 27-Jun-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G |
| MK643674 | Pt2.2_S1313 | South Africa | 27-Jun-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G |
| MK643675 | Pt2.2_S1314 | South Africa | 27-Jun-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,23*,27I,41T,60R,61R,71D,80*,83L,100K,116A,120G,124V,128D,148V,169F,178T,180D,184*,187D,203R,208E |
| MK643676 | Pt2.2_S1315 | South Africa | 27-Jun-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,10I,23*,27I,41T,71D,83L,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G |
| MK643677 | Pt2.2_S1316 | South Africa | 27-Jun-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G |
| MK643678 | Pt2.2_S1317 | South Africa | 27-Jun-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G |
| MK643679 | Pt2.2_S1318 | South Africa | 27-Jun-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G |
| MK643680 | Pt2.2_S1319 | South Africa | 27-Jun-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,23*,27I,41T,71D,80*,83L,116A,120G,124V,128D,148V,162K,169F,178T,180D,184*,187D,203R,208E |
| MK643557 | Pt2.3_S1075 | South Africa | 27-Oct-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,60R,71D,80*,83L,116A,117*,120G,124V,128D,148V,169F,175K,178T,180D,184*,187D,203R,208G,220R |
| MK643559 | Pt2.3_S1077 | South Africa | 27-Oct-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G |
| MK643577 | Pt2.3_S1114 | South Africa | 27-Oct-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G |
| MK643578 | Pt2.3_S1115 | South Africa | 27-Oct-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,8R,23*,27I,41T,60E,61R,71D,80*,83L,100K,116A,120G,124V,128D,133*,148V,156R,162K,169F,178T,180D,184*,187D,203R,208R,222R |
| MK643560 | Pt2.4_S1079 | South Africa | 09-Apr-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,23*,27I,41T,71D,80*,83L,89R,100K,116A,120G,124V,128D,148V,156R,169F,178T,180D,184*,187D,203R,208E,220R,222R |
| MK643581 | Pt2.4_S1119 | South Africa | 09-Apr-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83L,116A,120G,124V,128D,148V,169F,178T,180D,187D,203R,208G |
| MK643681 | Pt2.4_S1320 | South Africa | 09-Apr-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,8R,23*,27I,41T,60R,61R,71D,80*,83L,100K,116A,117*,120G,124V,128D,133*,137R,148V,156R,162K,169F,178T,180D,184*,187D,203R,208E |
| MK643682 | Pt2.4_S1321 | South Africa | 09-Apr-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,8R,10I,23*,27I,41T,71D,80*,83L,116A,117*,120G,124V,127R,128D,133*,148V,156R,167Q,169F,178T,180D,184*,187D,203R,206R,208E,229K |
| MK643536 | Pt3.1_S1050 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643537 | Pt3.1_S1051 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643589 | Pt3.1_S1147 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,122A,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643590 | Pt3.1_S1148 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,80*,83I,91A,116A,117*,120S,124V,148V,156R,167Q,169F,178T,180D,187D,191I,200I,204G,207Q,208R,210S |
| MK643591 | Pt3.1_S1150 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643592 | Pt3.1_S1151 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643593 | Pt3.1_S1154 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643594 | Pt3.1_S1156 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 13 | 231 | 27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643598 | Pt3.1_S1167 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643651 | Pt3.1_S1286 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,10I,27I,41T,71D,80*,83I,91A,106E,116A,120S,124V,148V,156R,169F,178T,180D,187D,191I,197N,200I,204R,207Q,208G,210S,220R,229K |
| MK643652 | Pt3.1_S1287 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,8R,23*,27I,41T,71D,80*,83I,91A,100K,116A,117*,120S,124V,148V,156R,169F,178T,180D,184*,187D,191I,200I,204R,207Q,208G,210S,213K |
| MK643653 | Pt3.1_S1288 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643654 | Pt3.1_S1289 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643655 | Pt3.1_S1290 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643656 | Pt3.1_S1292 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643657 | Pt3.1_S1293 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,51N,62R,71D,80*,81N,83I,91A,116A,120S,124V,132K,133*,148V,169F,178T,180N,187D,191I,198Y,200I,204E,206R,207Q,208G,210S,212K,214I,220E,222E,223E |
| MK643658 | Pt3.1_S1294 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,23*,27I,41T,71D,80*,83I,91A,97K,100K,116A,117*,120S,124V,133*,137R,148V,156R,166N,169F,178T,180D,184*,187D,191I,200I,204G,207Q,208R,210S |
| MK643659 | Pt3.1_S1295 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,23*,27I,41T,71D,80*,83I,91A,100K,116A,120S,124V,133*,148V,169F,178T,180D,184*,187D,191I,200I,204G,207Q,208R,210S,220R,223R |
| MK643660 | Pt3.1_S1296 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643661 | Pt3.1_S1297 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643662 | Pt3.1_S1298 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643663 | Pt3.1_S1299 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643805 | Pt3.1_S1459 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643807 | Pt3.1_S1462 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643808 | Pt3.1_S1463 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643809 | Pt3.1_S1464 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643810 | Pt3.1_S1465 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643811 | Pt3.1_S1466 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643812 | Pt3.1_S1467 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643813 | Pt3.1_S1468 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643815 | Pt3.1_S1470 | South Africa | 02-Mar-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643599 | Pt3.2_S1176 | South Africa | 07-Apr-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,18K,27I,28K,41T,51N,71D,80*,81N,82K,83I,91A,96I,116A,118I,120S,124V,132K,133*,143K,148V,163N,166N,169F,178T,180N,184*,187D,191I,198Y,200I,204G,206R,207Q,208G,210S,212K,214I |
| MK643600 | Pt3.2_S1193 | South Africa | 07-Apr-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643664 | Pt3.2_S1300 | South Africa | 07-Apr-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643818 | Pt3.2_S1473 | South Africa | 07-Apr-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643571 | Pt3.3_S1097 | South Africa | 04-Aug-2015 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,27I,41T,71D,83I,91A,116A,120S,124V,148V,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MK643561 | Pt4.1_S1083 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643582 | Pt4.1_S1121 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G,231A |
| MK643601 | Pt4.1_S1208 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643602 | Pt4.1_S1209 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643604 | Pt4.1_S1214 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643669 | Pt4.1_S1308 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643670 | Pt4.1_S1309 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643671 | Pt4.1_S1310 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643723 | Pt4.1_S1365 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G,212K |
| MK643726 | Pt4.1_S1368 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643727 | Pt4.1_S1369 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643729 | Pt4.1_S1371 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643730 | Pt4.1_S1372 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643732 | Pt4.1_S1374 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643754 | Pt4.1_S1398 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643756 | Pt4.1_S1400 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643757 | Pt4.1_S1401 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,8R,10I,15L,18K,23*,27I,41T,46R,60E,61R,71D,80*,91V,101R,106R,116A,117*,120S,127R,128D,133*,137R,148V,156R,162K,166N,169F,173K,178T,184*,187D,203R,206R,208E,220R,223R |
| MK643759 | Pt4.1_S1403 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643760 | Pt4.1_S1404 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643761 | Pt4.1_S1405 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643762 | Pt4.1_S1406 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643763 | Pt4.1_S1407 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643764 | Pt4.1_S1408 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643765 | Pt4.1_S1410 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,23*,27I,41T,60R,71D,80*,91V,116A,117*,120S,128D,148V,156R,169F,178T,184*,187D,203R,208G,222R |
| MK643766 | Pt4.1_S1411 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643767 | Pt4.1_S1413 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,23*,27I,41T,71D,80*,91V,116A,120S,128D,133*,148V,169F,178T,184*,187D,203R,208E |
| MK643768 | Pt4.1_S1414 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643770 | Pt4.1_S1416 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643771 | Pt4.1_S1417 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643776 | Pt4.1_S1422 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643778 | Pt4.1_S1424 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643779 | Pt4.1_S1425 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643782 | Pt4.1_S1428 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643783 | Pt4.1_S1429 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643784 | Pt4.1_S1431 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643785 | Pt4.1_S1432 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643787 | Pt4.1_S1434 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643788 | Pt4.1_S1436 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643790 | Pt4.1_S1441 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643791 | Pt4.1_S1442 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643792 | Pt4.1_S1443 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643793 | Pt4.1_S1446 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643794 | Pt4.1_S1447 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,134R,148V,169F,178T,187D,190*,203R,208G |
| MK643796 | Pt4.1_S1450 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643797 | Pt4.1_S1451 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643801 | Pt4.1_S1455 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,28G,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643802 | Pt4.1_S1456 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643803 | Pt4.1_S1457 | South Africa | 04-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643563 | Pt4.2_S1085 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643564 | Pt4.2_S1086 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,137R,148V,169F,178T,187D,203R,208G |
| MK643583 | Pt4.2_S1122 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,23*,27I,41T,71D,80*,91V,116A,120S,128D,148V,169F,178T,187D,203R,206R,208G |
| MK643584 | Pt4.2_S1123 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643608 | Pt4.2_S1219 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643609 | Pt4.2_S1220 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643610 | Pt4.2_S1221 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643611 | Pt4.2_S1222 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643613 | Pt4.2_S1224 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643614 | Pt4.2_S1225 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643615 | Pt4.2_S1226 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643616 | Pt4.2_S1227 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643618 | Pt4.2_S1229 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643619 | Pt4.2_S1230 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643620 | Pt4.2_S1231 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643621 | Pt4.2_S1232 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643622 | Pt4.2_S1233 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643623 | Pt4.2_S1234 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643685 | Pt4.2_S1324 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643686 | Pt4.2_S1325 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643687 | Pt4.2_S1326 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643689 | Pt4.2_S1328 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643690 | Pt4.2_S1329 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643692 | Pt4.2_S1331 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643696 | Pt4.2_S1335 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643697 | Pt4.2_S1336 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643698 | Pt4.2_S1337 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643707 | Pt4.2_S1348 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643708 | Pt4.2_S1349 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643709 | Pt4.2_S1350 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643713 | Pt4.2_S1354 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643714 | Pt4.2_S1355 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643718 | Pt4.2_S1359 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643719 | Pt4.2_S1360 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643733 | Pt4.2_S1375 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643734 | Pt4.2_S1376 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G,215T |
| MK643735 | Pt4.2_S1377 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 223 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G,209G,209G_VLRIR*LI*WICCCLALHLLLRFLRACRVPSSVG*GSEMTKVSIPA*PYL**KAQQKLFSILLSLLLL**IFLYTTSNLICQTNSTDYSNCPMPINLFHFSPAGFAILQARCILCLCNY*FLYPTASMSCCSKYL*EIYYSNWSSKAQRWGI*VSQSSPKVLGAVDPLGISLWPGLLPGAV*CPRP*VATYAVAPL*PSANCFAVALYQTTVVWPVPSALLTPRP*CFLPLPRTQGVQLLFPLLVFLSPPLSFLPHLVLFLMA*FLPLYIYIIHFSNCPSYLLLLV*MSLFCCLFHFLFLHHVSIVVL*YLIYMLCFLQWEGHTLLVLPPATCL*FVLFCMGV*WFRLYPFPVLLY*TVLLYCNRKILLYN*NYVL*FLGPLLSGY*IVLFY*SVLVVSFLLFLK*YSIVFY*CYNVLVLCLLLYYL*RVLVLVLSLYFFLYYCQVWYN*FLQIH*SVLLLFWHCLSGFLI*LLSPLLLNCHLTVVELILLA*FHVYIVLC*HWCMVLSH*MSYYYTLISHNQLEHNNV*ELGQK*PLDRLVLWLRYCNLLIYTH*NYLH*VVLYQVYKKVHTLSVSYLLMLWLY*KYNFLFLLVL*SC*YWWCSW*C*HHYSLK*HRVGSTLHMALGFGPIN*LYLHASDPPYHFSTC*NFLLHFPKPSLVGWGLWVHRHV*PRCYALLSHMP*HLMHRIE*FLRLSIQVPHNKL*PTSSPPLH*LLSTKSLTCPISTIVANSSVSPSLSLPLSSALSLILSIKLFILFCLNSFLYSIYTMVHTTIAMINAISKAPTPTL*STLSSKSIYLLL*YRILMILTARRSSASLSPLLPAIGNA*AFCLETN*TMIAATFTEAFIASSFRLTPWMFPGF*VRIYWLHFLLFSAARFLFCYAGTQF*NE*TEVVAVFLLWLQLLSKYPHRFHRCVVLVHGATV*ESV*QLPA*VPLEFLVSIHCMVPSMAPDPLGVVPSILY*FSNTRQRWLYPFWFYQCCQCQVL*RSYLIMSCLIVTPRNNYVS*YGFSYGRVCKTIKIMHMN*LVCQARVYLCAISFQSPFYGDSMTQMPISFSCLQTPIGFYY*SSIP*WYVYF*TYLWMSAFIMMSVRPSTSSP*YIHVVLY*TIPCSNPHPVYLPHNQHLPSAFHSP**FLLSSLVLPLCHCYPVVLLPLHLSRVAWLVLSK*GLCCLCNKPENFGFL*FAFVIL*FVCLLLLCLLFFPLHCTPQSPLFF*NCE*ILPFVLLS*GAQLDLLPAL*FSLILYSWILLLPDFGDCREFQIPAGYLPTNRLP*LQHW*NYCHCLYVLL*LAIFLLILVYSMLFLVLFLLG*PLLLCSHWLHGLLPE*FSLLNVYNLIAIPLDYSLLVHVWLPLLADIYHS*LLFLLLLWVAD*THWPLLSNCCDTFHDLLEPYLFHLGGGKPLSIWEVLCNIGV*S*KGVLLVCLIP*Q*Q*LKEQIGL*NIYKEFL*PSATDKNKTGFESSFAIEWGASGQNASELNGLL*EK,210K,211I,212R,213Q,214T,215D,216P,218A,219E,223A |
| MK643736 | Pt4.2_S1378 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643737 | Pt4.2_S1379 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,23*,27I,41T,71D,80*,91V,116A,120S,128D,148V,169F,170R,178T,187D,203R,208G |
| MK643738 | Pt4.2_S1380 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,46E,71D,91V,97K,101E,106E,116A,120S,128D,132K,148V,169F,173K,178T,180K,187D,203R,208G,213K,222E,223E |
| MK643739 | Pt4.2_S1381 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643740 | Pt4.2_S1382 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643742 | Pt4.2_S1384 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643743 | Pt4.2_S1385 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643744 | Pt4.2_S1386 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643745 | Pt4.2_S1387 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643746 | Pt4.2_S1389 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643747 | Pt4.2_S1390 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643748 | Pt4.2_S1391 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,8R,10I,15L,23*,27I,41T,60R,61R,71D,80*,91V,101R,116A,117*,120S,128D,133*,137R,148V,156R,169F,178T,184*,187D,203R,206R,208E,220R,222R |
| MK643753 | Pt4.2_S1396 | South Africa | 28-Feb-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643565 | Pt4.3_S1088 | South Africa | 27-Jun-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643566 | Pt4.3_S1089 | South Africa | 27-Jun-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643585 | Pt4.3_S1124 | South Africa | 27-Jun-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643567 | Pt4.4_S1090 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643568 | Pt4.4_S1091 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,23*,27I,41T,61R,71D,80*,89R,91V,100K,110N,116A,117*,120S,128D,148V,156R,169F,175K,178T,184*,187D,203R,208K |
| MK643569 | Pt4.4_S1092 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,21I,25Q,27I,41T,71D,91V,116A,120S,128D,132S,148V,169F,178T,187D,203R,208G |
| MK643586 | Pt4.4_S1125 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643588 | Pt4.4_S1127 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643624 | Pt4.4_S1236 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643626 | Pt4.4_S1238 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643627 | Pt4.4_S1239 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643629 | Pt4.4_S1242 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643630 | Pt4.4_S1243 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643631 | Pt4.4_S1244 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643632 | Pt4.4_S1245 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643634 | Pt4.4_S1247 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643637 | Pt4.4_S1250 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643638 | Pt4.4_S1251 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,110N,116A,120S,128D,143G,148V,169F,178T,187D,203R,208G |
| MK643639 | Pt4.4_S1252 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,110N,116A,120S,128D,148V,169F,178T,183K,187D,203R,208G |
| MK643640 | Pt4.4_S1253 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,28K,41T,46K,51N,71N,80*,91V,97K,98K,101E,103N,110N,116A,117*,118I,120S,128D,133*,148V,163N,167Q,169F,173K,175K,178T,184*,187D,203R,206R,208G,212K,214I,220E,222E,223R |
| MK643641 | Pt4.4_S1254 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643643 | Pt4.4_S1256 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71N,76K,80*,91V,96I,110N,116A,118I,120S,128D,148V,162K,169F,175K,178T,184*,187D,208G,212K,214I,215I,222E |
| MK643644 | Pt4.4_S1257 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71N,91V,110N,116A,120S,128D,148V,169F,178T,184*,187D,203R,208G,214I |
| MK643645 | Pt4.4_S1259 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,23*,27I,41T,71D,91V,110N,116A,117*,120S,128D,133*,137R,148V,169F,178T,184*,187D,203R,208G,225S |
| MK643647 | Pt4.4_S1261 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,61R,71D,80*,91V,116A,120S,128D,148V,169F,178T,184*,187D,203R,206R,208G,222R |
| MK643649 | Pt4.4_S1264 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,10I,15L,23*,27I,41T,60R,71D,80*,91V,100K,110N,116A,117*,120S,128D,133*,148V,156K,169F,173K,178T,184*,187D,203R,206R,208E,220E,229K |
| MK643701 | Pt4.4_S1341 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643702 | Pt4.4_S1342 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,8R,10I,15L,23*,27I,28K,41T,46R,60R,71N,80*,89R,91V,100K,101R,110N,116A,117*,120S,127R,128D,133*,137R,148V,156R,162K,165I,167Q,169F,178T,184*,187D,198Y,203R,206R,208E,212K,220R,222R,223R,225S,229K |
| MK643703 | Pt4.4_S1343 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MK643705 | Pt4.4_S1345 | South Africa | 15-Dec-2014 | | genomic DNA | PBMC from blood | subtype: C | 1 | 231 | 6L,15L,27I,41T,71D,91V,110N,116A,120S,128D,148V,169F,178T,187D,203R,208G |