| Accession | IsolateName | Country | Coll Date | Clone | MolType | Source | Note | FirstAA | LastAA | MutList |
|---|
| MT781612 | 1-0003-6 | Malawi | 27-Oct-2015 | | genomic RNA | | subtype: C(99.8%),F2(0.2%) | 1 | 231 | 14P,15L,27I,41T,71D,83T,96I,110N,116A,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S |
| MT781613 | 1-0006-4 | Malawi | 30-Oct-2015 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,15L,41T,71D,83T,91N,92P,110N,116A,120G,148V,154K,169F,171C,178T,183G,187D,200I,204G,208G,210S,225S |
| MT781614 | 1-0014-9 | Malawi | 04-Nov-2015 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 27I,41T,71D,83T,96V,116A,148V,154K,169F,178T,180D,187D,203R,208G |
| MT781615 | 1-0017-3 | Malawi | 05-Nov-2015 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,15L,27I,41T,71D,83L,91V,110N,116A,120S,128D,148V,154K,169F,171V,178T,180D,210S,225S |
| MT781616 | 1-0019-1 | Malawi | 06-Nov-2015 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,41T,71D,78T,91V,116A,120S,136M,148I,154K,160S,168W,169F,177C,178T,180D,187D,208G,225S |
| MT781618 | 1-0025-7 | Malawi | 11-Nov-2015 | | genomic RNA | | subtype: A2(0.6%),C(99.2%),J(0.2%) | 1 | 231 | 6A,10P,15L,16T,31N,41T,71D,83I,91V,107A,116A,120G,128D,136M,148V,154K,160S,169F,171A,178T,180D,187D,203R,204G,208G |
| MT781619 | 1-0028-9 | Malawi | 11-Nov-2015 | | genomic RNA | | subtype: A1(0.1%),B(0.6%),C(99.3%) | 1 | 231 | 6A,16T,27I,41T,71D,83M,115M,116A,118I,120G,148V,154K,169F,178T,187D,191I,199R,207S,208G,225S,230I |
| MT781620 | 1-0034-6 | Malawi | 13-Nov-2015 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,41T,71D,83L,86A,91V,96I,107S,115M,116A,118I,120G,124V,148V,154K,169F,187D,203R,204G,208G,225S |
| MT781621 | 1-0036-5 | Malawi | 16-Nov-2015 | | genomic RNA | | subtype: C(99.9%),D(0.1%) | 1 | 231 | 6L,14P,15M,31G,41T,71D,83L,87Q,96I,110N,115V,116A,128D,136I,148V,154K,169F,178T,180D,187D,200I,204G,208G |
| MT781622 | 1-0037-7 | Malawi | 17-Nov-2015 | | genomic RNA | | subtype: 01_AE(0.6%),C(99.2%),G(0.2%) | 1 | 231 | 6L,15L,27I,33N,41T,71D,75D,83T,87Q,91V,96I,116T,120S,128D,148V,169F,178T,180D,203R,208G |
| MT781623 | 1-0038-2 | Malawi | 17-Nov-2015 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,41T,71D,91V,96V,115V,116A,120S,148V,154K,169F,178T,180D,200I,203R,204G,208G,225S |
| MT781624 | 1-0043-7 | Malawi | 24-Nov-2015 | | genomic RNA | | subtype: C(99.7%),G(0.3%) | 1 | 231 | 6L,14P,27I,41T,71D,83L,91P,110N,120S,128D,148V,154K,169F,171V,178T,180D,203R,225S |
| MT781625 | 1-0044-3 | Malawi | 24-Nov-2015 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,83L,91V,110N,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G |
| MT781626 | 1-0046-0 | Malawi | 25-Nov-2015 | | genomic RNA | | subtype: A1(0.1%),C(99.7%),F1(0.2%) | 1 | 231 | 6L,15L,27I,41T,71D,116A,120S,128D,148V,169F,178T,187D,203R,208G |
| MT781627 | 1-0056-6 | Malawi | 01-Dec-2015 | | genomic RNA | | subtype: A1(0.2%),C(99.3%),F1(0.5%) | 1 | 231 | 6L,14S,15L,27I,31G,33N,41T,71D,83L,91V,110N,115V,116A,120G,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S |
| MT781628 | 1-0058-0 | Malawi | 01-Dec-2015 | | genomic RNA | | subtype: A1(0.9%),C(95.7%),G(0.5%),H(2.7%),J(0.1%) | 1 | 231 | 6A,27I,41T,71D,83L,107A,110N,116A,120G,123A,148V,154K,169F,178T,180D,203R,204G,207Q,208G,225S |
| MT781629 | 1-0060-8 | Malawi | 02-Dec-2015 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,27I,41T,71D,83L,116A,120G,122Q,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S |
| MT781630 | 1-0061-4 | Malawi | 02-Dec-2015 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,41T,71D,83L,91V,110N,116A,120A,128D,136M,148V,169F,171C,178T,180D,187D,203R,208G,225S |
| MT781631 | 1-0067-0 | Malawi | 07-Dec-2015 | | genomic RNA | | subtype: A1(0.2%),C(99.7%),D(0.1%) | 1 | 231 | 6L,27I,36I,41T,75D,77I,83L,91V,107A,116A,120G,123A,124V,128D,148V,154K,169F,180D,183S,187D,203R,208G,225S |
| MT781632 | 1-0070-3 | Malawi | 08-Dec-2015 | | genomic RNA | | subtype: C(99.8%),F1(0.2%) | 1 | 231 | 6A,27I,41T,71D,91V,107A,116A,120S,128D,148V,154K,169F,178T,200N,203R,208G,210S,225S |
| MT781633 | 1-0071-0 | Malawi | 08-Dec-2015 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,50T,71D,83L,107S,116A,120S,124V,128D,148V,154K,169F,171V,178T,200S,203R |
| MT781634 | 1-0079-6 | Malawi | 14-Dec-2015 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6M,14P,15L,27I,31G,33N,41T,71D,83L,110N,115V,116A,120G,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S |
| MT781635 | 1-0084-7 | Malawi | 15-Dec-2015 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,41T,68I,71D,78S,83T,91V,110N,116A,120S,124V,148V,154K,169F,177G,178T,180D,187D,203R,208G,225S |
| MT781636 | 1-0086-9 | Malawi | 16-Dec-2015 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14S,52I,71D,83L,96L,107S,110S,116A,120A,132K,148V,154K,169F,171C,180D,187D,204G,207S,208G,210S |
| MT781637 | 1-0088-1 | Malawi | 17-Dec-2015 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,27I,41T,50A,54S,59I,71D,83L,87Q,91V,96I,110N,116A,120H,128D,148V,154K,163E,169F,187D,207M,208G,225S |
| MT781638 | 1-0094-0 | Malawi | 05-Jan-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,83L,116A,124V,128D,148V,154K,169F,178T,179A,200V,203R,204G,208G |
| MT781639 | 1-0095-6 | Malawi | 05-Jan-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14S,15L,27I,41T,68I,71D,83L,91V,110N,116A,120S,128D,148V,169F,178T,180D,203R,208G |
| MT781640 | 1-0097-2 | Malawi | 05-Jan-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6M,14P,16A,17A,27I,31N,41T,71D,83L,96I,116A,135V,148V,154K,169F,178T,187D,203R,204G,208G |
| MT781641 | 1-0101-0 | Malawi | 06-Jan-2016 | | genomic RNA | | subtype: B(0.2%),C(99.8%) | 1 | 231 | 6L,15L,27I,41T,50T,71D,83L,86I,91V,116A,120S,124V,128D,148V,154K,169F,171V,178T,180D,187D,203R,208G |
| MT781642 | 1-0102-5 | Malawi | 06-Jan-2016 | | genomic RNA | | subtype: C(100.0%),J(0.0%) | 1 | 231 | 6V,14P,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G |
| MT781643 | 1-0119-0 | Malawi | 14-Jan-2016 | | genomic RNA | | subtype: C(98.2%),D(1.5%),K(0.3%) | 1 | 231 | 6L,27I,41T,71D,83L,91V,98D,116A,120S,124V,128D,148V,154K,169F,171V,178T,180D,187D,191I,210S,225S |
| MT781644 | 1-0122-9 | Malawi | 15-Jan-2016 | | genomic RNA | | subtype: C(99.8%),K(0.2%) | 1 | 231 | 6L,14N,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,169F,178T,180D,187D,207T,208G |
| MT781645 | 1-0125-5 | Malawi | 15-Jan-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 14P,15L,27I,31N,41V,71D,83T,91V,112A,116A,120G,123A,124V,128D,132K,135V,148V,154K,169F,178T,180D,187D,191T,208G,210S |
| MT781646 | 1-0126-1 | Malawi | 18-Jan-2016 | | genomic RNA | | subtype: C(99.2%),F2(0.8%) | 1 | 231 | 6L,27I,41T,71D,83T,91A,96I,107A,116T,120S,128D,148V,169F,178T,187D,203R,208G,225S |
| MT781648 | 1-0134-8 | Malawi | 21-Jan-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,83L,91V,120S,135V,148V,154K,169F,171V,177S,187D,191I,207S,208G,225S |
| MT781649 | 1-0135-0 | Malawi | 21-Jan-2016 | | genomic RNA | | subtype: B(0.2%),C(99.8%) | 1 | 231 | 6A,14T,15L,41T,50G,83T,91V,105I,107A,111T,116A,120S,128D,148V,154K,160S,169F,171A,180D,183G,203R,204G,207Q,208G,210S,225S |
| MT781650 | 1-0138-3 | Malawi | 22-Jan-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,15L,27I,31G,33K,41T,71D,83L,87Q,96I,107S,110N,115V,116T,120S,148V,169F,178T,180D,187D,200I,204G,207Q,208G,210S,225S |
| MT781651 | 1-0140-0 | Malawi | 22-Jan-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,41T,71D,75D,83L,91T,96V,116A,120S,148V,154K,169F,183G,187D,191I,208G,225S |
| MT781652 | 1-0155-7 | Malawi | 29-Jan-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,13T,14P,15L,16T,27I,31N,41T,71D,83L,86I,91V,96L,110N,116A,120A,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S |
| MT781653 | 1-0166-0 | Malawi | 04-Feb-2016 | | genomic RNA | | subtype: A1(0.2%),B(0.3%),C(98.0%),D(1.5%) | 1 | 231 | 6A,14S,27I,41T,71D,83L,91V,107A,116A,120S,128D,148V,154K,169F,171C,178T,183G,203R,204G,207T,208G |
| MT781654 | 1-0169-5 | Malawi | 08-Feb-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,27I,41T,71D,83L,107A,116A,120S,124V,128D,148V,154K,169F,170R,171V,178T,180D,187D,203R,210S |
| MT781655 | 1-0175-6 | Malawi | 08-Feb-2016 | | genomic RNA | | subtype: C(98.9%),D(1.1%) | 1 | 231 | 6F,14P,15L,27I,31G,33N,41T,71D,83L,87Q,91V,96V,115V,116A,120S,128D,148V,169F,178T,180D,187D,203R,208G,225S |
| MT781656 | 1-0176-3 | Malawi | 09-Feb-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14P,27I,41T,71D,83L,86P,87Q,91V,98D,112A,116A,120S,128D,148V,154K,169F,177C,178T,183H,203R,204G,207A,208G |
| MT781657 | 1-0184-5 | Malawi | 12-Feb-2016 | | genomic RNA | | subtype: C(99.6%),H(0.4%) | 1 | 231 | 6L,27I,33N,71D,83L,116A,120S,128D,148V,154K,169F,171V,177S,178T,187D,191I,207S,208G,225S |
| MT781658 | 1-0186-6 | Malawi | 15-Feb-2016 | | genomic RNA | | subtype: C(99.0%),K(1.0%) | 1 | 231 | 6L,14P,15L,27I,36I,41T,56F,71D,83L,116A,120S,128D,148V,154K,169F,178T,180D,200I,204G,207Q,208G,225S |
| MT781659 | 1-0187-8 | Malawi | 16-Feb-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6H,14P,15V,27I,31G,33N,41T,54S,58I,71D,83L,86A,87Q,91V,96I,116I,120S,124V,128D,148V,169F,178T,187D,191I,203R,208G |
| MT781660 | 1-0192-2 | Malawi | 17-Feb-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,83L,91V,111P,116A,120G,128D,148V,154K,169F,171V,177S,178T,183R,187D,203R,208G |
| MT781661 | 1-0208-1 | Malawi | 25-Feb-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,11I,14P,27I,41T,71D,78V,83L,91V,116A,120S,128D,148V,154K,169F,178T,187D,203R,208G |
| MT781662 | 1-0210-6 | Malawi | 26-Feb-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,10P,11I,14P,15L,27I,31N,41T,71D,83L,91V,116A,128D,148V,154K,169F,178T,187D,194S,200A,203R,208G,215L |
| MT781663 | 1-0213-2 | Malawi | 26-Feb-2016 | | genomic RNA | | subtype: B(0.4%),C(99.6%),F1(0.0%) | 1 | 231 | 6A,14P,27I,41T,71D,83I,91V,116A,120S,128D,148V,154K,169F,171C,178T,180D,187D,203R,210S,225S |
| MT781664 | 1-0219-3 | Malawi | 04-Mar-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,10H,15L,27I,41T,71D,83L,91N,92P,116A,120S,148V,154K,169F,178T,187D,203R,204G,208G |
| MT781665 | 1-0222-2 | Malawi | 08-Mar-2016 | | genomic RNA | | subtype: B(0.0%),C(100.0%) | 1 | 231 | 6L,27I,41T,71D,91V,96I,116T,120S,128D,148V,154K,169F,178T,188S,203R,208G |
| MT781666 | 1-0224-9 | Malawi | 08-Mar-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,41T,50A,71D,83L,92Q,116A,120S,128D,148V,154K,169F,178T,187D,203R,204G,208G,210S,225S |
| MT781667 | 1-0233-4 | Malawi | 10-Mar-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,15L,41T,59I,71D,75D,91V,102T,105V,107S,116A,120S,128D,148V,169F,171A,178T,180D,200I,204G,208G,225S |
| MT781668 | 1-0239-2 | Malawi | 14-Mar-2016 | | genomic RNA | | subtype: A2(0.8%),C(98.5%),J(0.6%) | 1 | 231 | 6L,27I,41T,71D,83L,116A,124V,128D,148V,169F,171V,178T,187D,203R,208G |
| MT781669 | 1-0241-0 | Malawi | 14-Mar-2016 | | genomic RNA | | subtype: C(99.5%),F1(0.5%) | 1 | 231 | 6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G,225S |
| MT781670 | 1-0243-8 | Malawi | 15-Mar-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 15L,41T,54S,68I,71D,83L,91V,116A,120S,128D,148V,169F,177C,178T,180D,191I,203R,208G,211I,225S,230I |
| MT781671 | 1-0247-4 | Malawi | 16-Mar-2016 | | genomic RNA | | subtype: A1(1.1%),B(0.5%),C(98.4%) | 1 | 231 | 6L,27I,41T,71D,79D,83L,107S,116A,120G,124V,128D,148V,154K,169F,177S,178T,187D,203R,208G,210S,230I |
| MT781672 | 1-0261-9 | Malawi | 22-Mar-2016 | | genomic RNA | | subtype: C(99.9%),D(0.1%) | 1 | 231 | 14P,15L,27I,31N,41T,71D,83T,87Q,96I,98D,116T,120G,122Q,148V,154K,163E,169F,178T,180D,187D,203R,208G,210S,215L,225S |
| MT781673 | 1-0263-1 | Malawi | 23-Mar-2016 | | genomic RNA | | subtype: C(99.5%),F2(0.2%),J(0.3%) | 1 | 231 | 6L,15L,27I,41T,71D,83L,95H,96I,116T,120S,124V,128D,136M,148V,154K,169F,171V,178T,180D,187D,191T,203R,208G,225S |
| MT781674 | 1-0264-0 | Malawi | 23-Mar-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,83L,91N,92P,115V,116A,120S,128D,148V,169F,171C,178T,204G,207Q,208G |
| MT781675 | 1-0266-3 | Malawi | 23-Mar-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,33N,36I,41T,50T,71D,83L,91V,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S |
| MT781676 | 1-0269-8 | Malawi | 29-Mar-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,27I,71D,83L,116A,120C,124V,148V,154K,169F,178T,183H,203R,208G,225S |
| MT781677 | 1-0270-1 | Malawi | 29-Mar-2016 | | genomic RNA | | subtype: A1(0.4%),C(99.6%) | 1 | 231 | 2V,6A,41T,71D,83L,87Q,91N,92P,107S,115V,116A,120G,148V,154K,169F,170R,178T,180D,187D,203R,208G,210S |
| MT781678 | 1-0271-2 | Malawi | 29-Mar-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14P,27I,41T,71D,83L,91P,107A,116A,118I,120G,146C,148V,169F,194S,207A,208G |
| MT781679 | 1-0281-1 | Malawi | 01-Apr-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14T,15L,27I,47C,71D,83T,92P,93A,116A,120S,124M,128D,148V,154K,169F,178T,180D,187D,191I,200I,204G,207S,208G,210S,225S |
| MT781680 | 1-0284-8 | Malawi | 05-Apr-2016 | | genomic RNA | | subtype: B(0.2%),C(99.8%) | 1 | 231 | 6A,14P,27I,41T,71D,83I,91V,96I,110N,116T,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S |
| MT781681 | 1-0291-4 | Malawi | 08-Apr-2016 | | genomic RNA | | subtype: C(98.8%),F1(0.4%),G(0.4%),H(0.4%) | 1 | 231 | 14P,15L,27I,41T,71D,83L,107S,116A,120S,124V,128D,148V,154K,169F,171V,178T,180D,191I,207Q,208G,225S |
| MT781682 | 1-0292-9 | Malawi | 11-Apr-2016 | | genomic RNA | | subtype: C(99.3%),G(0.7%),J(0.0%) | 1 | 231 | 6L,27I,36I,41T,71D,83L,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,210S,225S |
| MT781683 | 1-0295-5 | Malawi | 11-Apr-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14S,27I,41T,71D,91V,116A,120S,128D,148V,169F,178T,190M,200S,203R,208G,210S,225S |
| MT781684 | 1-0299-7 | Malawi | 12-Apr-2016 | | genomic RNA | | subtype: B(0.1%),C(99.8%),F1(0.1%) | 1 | 231 | 6L,27I,36I,41T,71D,91V,116A,120S,121T,128D,148V,154K,169F,178T,180D,187D,203R,208G |
| MT781686 | 1-0301-7 | Malawi | 12-Apr-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6V,14P,27I,31S,71D,83L,91V,107S,116A,120S,128D,148V,154K,169F,178T,180D,187D,191I,203R,208G,210S,225S |
| MT781687 | 1-0304-5 | Malawi | 13-Apr-2016 | | genomic RNA | | subtype: 01_AE(0.1%),C(99.0%),G(0.1%),J(0.8%) | 1 | 231 | 6L,14P,27I,41T,79D,83L,96I,116A,128D,148V,154K,177S,178T,207S,208G |
| MT781688 | 1-0305-3 | Malawi | 14-Apr-2016 | | genomic RNA | | subtype: C(99.7%),J(0.3%) | 1 | 231 | 6A,27I,31N,41T,71D,83M,110N,116A,120S,148V,160S,169F,178T,180D,187D,191I,200V,203R,204G,208G,210S,225S |
| MT781689 | 1-0320-4 | Malawi | 20-Apr-2016 | | genomic RNA | | subtype: 01_AE(0.3%),C(96.8%),F2(1.5%),H(1.4%) | 1 | 231 | 6L,15L,27I,35E_VIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPIAPGQIREPRGSDIAGTTSTLQEQIAWMTNNPPVPVGEIYKRWIILGLNKIVRMYSPVSILDIKQGPKXXX*EKQVIEEKAFSPE,41T,71D,83L,96I,116A,124V,148V,154K,169F,177C,178T,183G,187D,191I,203R,208G,225S |
| MT781690 | 1-0321-8 | Malawi | 20-Apr-2016 | | genomic RNA | | subtype: C(99.9%),J(0.1%) | 1 | 231 | 6L,27I,41T,71D,83L,91A,116A,120S,128D,148V,154K,169F,177S,178T,187D,203R,207S,208G,225S |
| MT781691 | 1-0334-4 | Malawi | 28-Apr-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,11I,27I,41T,50S,71D,83L,91V,96I,116T,120G,128D,148V,154K,169F,171C,178T,183H,187D,207S,208G,225S |
| MT781692 | 1-0335-7 | Malawi | 28-Apr-2016 | | genomic RNA | | subtype: C(99.1%),D(0.9%) | 1 | 231 | 6L,14P,15L,27I,41T,71D,83L,91V,110N,116A,120S,128D,148V,154K,169F,171C,177C,178T,183G,187D,191I,200I,204G,207T,208G,225S |
| MT781693 | 1-0340-7 | Malawi | 29-Apr-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,27I,41T,71D,83L,116A,128D,148V,154K,169F,171V,178T,187D,204G,207Q,208G,210S |
| MT781694 | 1-0344-0 | Malawi | 03-May-2016 | | genomic RNA | | subtype: A1(0.2%),C(99.8%) | 1 | 231 | 6A,27I,29D,41T,71D,83M,86I,87P,91L,98D,107A,116T,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S |
| MT781695 | 1-0349-8 | Malawi | 06-May-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,11I,41T,50G,59I,71D,83L,91V,116A,120S,128D,148V,153V,154K,169F,171I,178T,187D,203R,204G,208G,225S |
| MT781696 | 1-0350-2 | Malawi | 06-May-2016 | | genomic RNA | | subtype: A1(0.1%),C(99.9%) | 1 | 231 | 6L,14P,15L,29D,31Q,41T,59I,83L,91V,98D,110N,120S,135V,148V,154K,178T,180D,200I,203R,204G,208G,225A |
| MT781697 | 1-0354-8 | Malawi | 09-May-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,16T,27I,41T,71D,75D,83T,91V,116A,120S,148V,154K,169F,178T,194S,208G,210S |
| MT781698 | 1-0356-4 | Malawi | 11-May-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,41T,50G,59I,71D,83S,87Q,91V,96L,98D,116A,120A,124V,148V,154K,169F,170R,178T,180D,187D,199R,204G,207S,208G,225S |
| MT781699 | 1-0357-5 | Malawi | 11-May-2016 | | genomic RNA | | subtype: C(99.9%),J(0.1%) | 1 | 231 | 6A,15L,16T,27I,31N,41T,75D,83L,91V,96L,116A,120A,148V,154K,169F,177T,178T,187D,203R,208G,225S |
| MT781700 | 1-0358-3 | Malawi | 11-May-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14S,15L,27I,41T,71D,83L,91A,116A,120S,124V,128D,148V,154K,169F,171V,178T,180D,203R,225S |
| MT781701 | 1-0361-6 | Malawi | 12-May-2016 | | genomic RNA | | subtype: A1(0.5%),B(0.2%),C(99.2%),F1(0.1%) | 1 | 231 | 6L,15L,27I,36I,41T,71D,83L,86P,91V,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G |
| MT781702 | 1-0362-2 | Malawi | 12-May-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,15L,41T,71D,83L,86P,87Q,94N,96I,98D,107S,116Q,120S,121T,148V,169F,171A,178T,180D,204G,207S,208G |
| MT781703 | 1-0363-0 | Malawi | 12-May-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,15L,27I,31G,33N,41T,71D,83L,116A,128D,148V,154K,169F,178T,180D,200V,203R,204G,207S,208G,210S |
| MT781704 | 1-0367-3 | Malawi | 17-May-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14S,41T,52I,71D,83I,116A,120S,124V,134V,148V,169F,178T,187D,191I,203R,204G,207A,208G,210S,230I |
| MT781705 | 1-0368-4 | Malawi | 18-May-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,78V,83L,86P,87Q,91V,96I,116T,120S,128D,148V,154K,169F,177S,178T,187D,191T,203R,208G |
| MT781706 | 1-0372-8 | Malawi | 19-May-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14S,27I,41T,71D,83T,91V,96I,116A,128D,148V,154K,169F,178T,180D,187D,200N,203R,208G,210S |
| MT781707 | 1-0373-5 | Malawi | 19-May-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14S,27I,41T,50T,71D,75D,83L,91V,110S,116A,120S,128D,148V,154K,169F,178T,180D,203R,204G,207Q,208G,210S,225S |
| MT781708 | 1-0374-7 | Malawi | 20-May-2016 | | genomic RNA | | subtype: C(99.9%),F1(0.0%),J(0.1%) | 1 | 231 | 6A,10R,14P,41T,50H,71D,83L,95H,96I,112E,116T,120S,128D,148V,154K,169F,170R,178T,180D,187D,203R,204G,207A,208G |
| MT781709 | 1-0379-4 | Malawi | 24-May-2016 | | genomic RNA | | subtype: C(100.0%),F1(0.0%) | 1 | 231 | 6L,14P,27I,41T,72A,75D,83L,91V,116A,120S,124V,128D,136M,148V,169F,171V,178T,180D,187D |
| MT781710 | 1-0380-3 | Malawi | 24-May-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 3I,6L,14P,15L,27I,41T,54V,71D,83I,91V,96I,116A,120S,128D,135V,148V,154K,169F,170R,178T,180D,203R,208G,225S |
| MT781711 | 1-0381-0 | Malawi | 24-May-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14S,27I,41T,71D,83L,86A,87Q,91V,96I,98D,116T,120G,128D,136I,148V,154K,169F,178T,180D,187D,203R,208G,210S |
| MT781712 | 1-0387-4 | Malawi | 25-May-2016 | | genomic RNA | | subtype: C(99.9%),F1(0.1%) | 1 | 231 | 6L,11I,14S,27I,41T,50H,71D,83T,91V,96T,116A,120G,124V,128D,148V,154K,169F,171I,178T,187D,203R,204G,208G |
| MT781713 | 1-0388-7 | Malawi | 25-May-2016 | | genomic RNA | | subtype: A1(0.1%),C(99.3%),G(0.6%) | 1 | 231 | 6L,14P,15L,41T,59I,71D,83L,91A,116A,120G,128D,148V,154K,169F,177S,178T,187D,191I,207S,208G |
| MT781714 | 1-0391-2 | Malawi | 26-May-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,83L,87Q,91V,96I,116A,124V,148V,154K,169F,178T,183G,200I,203R,204G,208G,210S |
| MT781715 | 1-0394-3 | Malawi | 26-May-2016 | | genomic RNA | | subtype: C(99.6%),D(0.2%),F1(0.2%) | 1 | 231 | 6L,16T,27I,41T,45D,54S,58V,71D,83L,91V,116A,128D,148V,154K,169F,170R,177S,178T,187D,203R,208G,210S,225S |
| MT781716 | 1-0401-8 | Malawi | 31-May-2016 | | genomic RNA | | subtype: C(99.6%),D(0.2%),F2(0.2%) | 1 | 231 | 6L,27I,41T,71D,92P,96V,116A,120A,124V,154K,169F,178T,187D,207Q,208G,210S,225S |
| MT781717 | 1-0405-1 | Malawi | 02-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14P,27I,41T,71D,78S,83L,91V,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S,225A |
| MT781718 | 1-0411-9 | Malawi | 02-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6V,15L,27I,41T,71D,83L,87Q,91V,98D,110N,116A,120S,148V,154K,169F,178T,180D,187D,191I,207S,208G,210S |
| MT781719 | 1-0412-4 | Malawi | 04-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,83L,87Q,91V,107A,116A,118I,120G,124V,136M,148V,169F,178T,183G,187D,203R,208G,225S |
| MT781720 | 1-0416-3 | Malawi | 04-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,83L,91A,116N,120G,124V,128D,136M,148V,154K,169F,178T,180D,187D,200I,203R,204G,208G,225A |
| MT781721 | 1-0417-2 | Malawi | 07-Jun-2016 | | genomic RNA | | subtype: A1(0.1%),C(99.9%) | 1 | 231 | 6L,14S,15L,27I,41T,50T,71D,83M,91M,92V,93A,116A,120S,124V,148V,154K,169F,178T,180D,203R,208G |
| MT781722 | 1-0420-9 | Malawi | 07-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,116A,120S,124V,148V,169F,178T,180D,203R,208G,225S |
| MT781723 | 1-0422-1 | Malawi | 08-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,36I,41T,71D,83L,91V,116A,120S,123A,128D,148V,154K,169F,178T,180D,183A,187D,200I,204G,207Q,208G |
| MT781724 | 1-0423-4 | Malawi | 09-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,41T,71D,83L,91V,112A,113D,116A,120A,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S |
| MT781725 | 1-0426-6 | Malawi | 09-Jun-2016 | | genomic RNA | | subtype: B(0.0%),C(100.0%) | 1 | 231 | 6A,27I,41T,71D,83L,91V,104V,116A,120G,136M,148V,154K,169F,178T,180D,187D,203R,208G,210S |
| MT781726 | 1-0427-8 | Malawi | 10-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,71D,83T,91V,116A,120S,148V,169F,178T,187D,208G |
| MT781727 | 1-0429-2 | Malawi | 10-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,27I,41T,71D,87Q,91V,98D,112A,116A,118I,120G,124V,148V,169F,178T,183G,187D,203R,208G,210S |
| MT781728 | 1-0432-2 | Malawi | 11-Jun-2016 | | genomic RNA | | subtype: 01_AE(0.0%),C(100.0%) | 1 | 231 | 6L,27I,41T,71D,83L,87P,116A,120S,124V,148V,154K,169F,178T,183H,187D,203R,208G,210S |
| MT781729 | 1-0435-8 | Malawi | 11-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,83L,86A,87Q,91V,96I,116T,120S,124V,148V,154K,169F,171V,178T,183H,200N,203R,210S,225S |
| MT781730 | 1-0436-7 | Malawi | 13-Jun-2016 | | genomic RNA | | subtype: 01_AE(0.6%),A1(0.0%),C(99.3%) | 1 | 231 | 6A,14S,27I,41T,71D,91V,116A,120S,128D,148V,154K,169F,178T,180D,203R,208G,210S |
| MT781731 | 1-0437-3 | Malawi | 13-Jun-2016 | | genomic RNA | | subtype: C(99.2%),G(0.6%),K(0.2%) | 1 | 231 | 14P,15L,27I,41T,71D,83L,96L,116A,120A,124V,148V,154K,169F,178T,180D,203R,208G,225S |
| MT781732 | 1-0440-8 | Malawi | 13-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14S,15L,27I,41T,71D,83M,91N,92P,93V,116A,120S,124V,148V,154K,169F,178T,187D,201L,208G |
| MT781733 | 1-0441-4 | Malawi | 15-Jun-2016 | | genomic RNA | | subtype: C(97.9%),D(2.1%) | 1 | 231 | 6A,16T,27I,41T,71D,75D,83L,91V,116A,120S,148V,154K,169F,171V,178T,180D,187D,207S,208G |
| MT781734 | 1-0451-3 | Malawi | 15-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,31G,33N,75D,78V,83L,96L,116A,120H,128D,148V,154K,169F,171A,178T,180D,187D,200I,204G,207T,208G |
| MT781735 | 1-0454-7 | Malawi | 20-Jun-2016 | | genomic RNA | | subtype: B(0.4%),C(98.9%),D(0.2%),J(0.5%) | 1 | 231 | 6L,27I,36I,71D,83L,86A,87Q,91F,92P,93Q,96L,116A,120H,128D,148V,154K,169F,170R,178T,180D,187D,203R,208G,225S |
| MT781736 | 1-0455-2 | Malawi | 21-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,41T,71D,91V,98D,116A,120S,124V,148V,169F,171C,178T,180D,187D,207Q,208G,225S |
| MT781737 | 1-0459-4 | Malawi | 22-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,36I,41T,71D,75D,83L,91V,116A,124V,128D,148V,169F,178T,187D,203R,208G |
| MT781738 | 1-0460-6 | Malawi | 22-Jun-2016 | | genomic RNA | | subtype: C(100.0%),H(0.0%) | 1 | 231 | 6A,27I,31N,41T,59I,71D,83L,91V,96I,110N,116A,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G |
| MT781739 | 1-0461-5 | Malawi | 22-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,11T,14T,15L,27I,41T,50H,71D,83L,91V,116A,120S,124T,128D,136M,148V,154K,169F,171C,178T,180D,187D,203R,204G,207Q,208G,210S,225S |
| MT781740 | 1-0465-7 | Malawi | 22-Jun-2016 | | genomic RNA | | subtype: C(99.8%),F1(0.2%),J(0.0%) | 1 | 231 | 6L,15L,27I,41T,71D,96V,116T,120S,148V,154K,169F,178T,203R |
| MT781741 | 1-0466-8 | Malawi | 23-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,75D,83L,116A,120S,128D,148V,154K,169F,177S,178T,203R,208G,225S |
| MT781742 | 1-0467-1 | Malawi | 23-Jun-2016 | | genomic RNA | | subtype: B(0.3%),C(99.7%) | 1 | 231 | 6L,27I,41T,71D,83L,91A,116A,120S,124V,128D,148V,154K,169F,171V,178T,180D,203R,210S |
| MT781743 | 1-0468-9 | Malawi | 23-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,27I,41T,71D,83M,91V,96L,116A,120A,123A,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S |
| MT781744 | 1-0478-3 | Malawi | 23-Jun-2016 | | genomic RNA | | subtype: C(99.6%),D(0.4%),J(0.0%) | 1 | 231 | 6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171C,177S,178T,187D,203R,208G |
| MT781745 | 1-0483-7 | Malawi | 27-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,15L,27I,41T,71D,83M,115V,116A,120S,128D,148V,154K,169F,171C,178T,180D,187D,207Q,208G |
| MT781746 | 1-0484-3 | Malawi | 29-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,11T,15L,27I,41T,68I,71D,83L,86I,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S |
| MT781747 | 1-0486-0 | Malawi | 30-Jun-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6Q,14S,41T,71D,83T,116A,120G,123A,136I,148V,169F,178T,180D,187D,203R,204G,208G,225S |
| MT781748 | 1-0489-5 | Malawi | 30-Jun-2016 | | genomic RNA | | subtype: C(99.5%),D(0.5%) | 1 | 231 | 6L,14P,27I,41T,71D,83L,107S,116A,120S,124V,128D,148V,169F,171C,178T,180D,203R,225S |
| MT781749 | 1-0492-5 | Malawi | 01-Jul-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6V,14P,27I,41T,71D,83L,91V,116A,120G,123A,128D,148V,154K,169F,171V,178T,180D,203R,207A,208G |
| MT781750 | 1-0494-1 | Malawi | 01-Jul-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14S,15L,27I,41T,68L,71D,83L,116A,120S,124V,128D,148V,153V,169F,171I,178T,180D,203R,225S |
| MT781751 | 1-0501-6 | Malawi | 05-Jul-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,15L,16T,31N,41T,50A,71D,83T,115V,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S |
| MT781752 | 1-0504-9 | Malawi | 08-Jul-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,15L,27I,31G,33N,41T,71D,107S,110N,116A,120A,124V,135V,148V,154K,169F,178T,203R,210S |
| MT781753 | 1-0505-8 | Malawi | 08-Jul-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14P,27I,41T,71D,83L,110N,116A,120G,128D,148V,154K,169F,178T,180D,187D,191I,203R |
| MT781754 | 1-0506-7 | Malawi | 08-Jul-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,75D,83L,86A,91V,92Q,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G,225S |
| MT781755 | 1-0509-1 | Malawi | 12-Jul-2016 | | genomic RNA | | subtype: A1(0.2%),C(99.8%) | 1 | 231 | 6P,27I,41T,68I,71D,83M,91V,96I,107A,116T,120S,128D,148V,169F,178T,180D,203R,208G,210S |
| MT781756 | 1-0513-8 | Malawi | 13-Jul-2016 | | genomic RNA | | subtype: B(1.2%),C(96.8%),F2(1.2%),H(0.7%) | 1 | 231 | 6A,27I,41T,45D,50S,54S,58V,71D,83L,86I,116A,120S,128D,148V,154K,169F,178T,180D,203R,208G,210S,211V |
| MT781757 | 1-0514-1 | Malawi | 14-Jul-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,27I,41T,50S,54C,71D,83L,87Q,91V,96I,116A,118T,120A,135V,148V,154K,169F,170R,171A,178T,180D,187D,207Q,208G,225S |
| MT781758 | 1-0517-4 | Malawi | 15-Jul-2016 | | genomic RNA | | subtype: A1(0.6%),C(99.4%),F1(0.0%) | 1 | 231 | 6L,27I,31N,41T,71D,83M,116Q,120S,124V,148V,152E,154K,169F,177G,178T,187D,191I,203R,208G,210S,225A |
| MT781759 | 1-0518-7 | Malawi | 19-Jul-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,15L,27I,31N,41T,71D,83L,91V,116A,120S,128D,148V,154K,163E,169F,178T,180D,187D,200I,203R,204G,208G |
| MT781760 | 1-0519-6 | Malawi | 19-Jul-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,15L,27I,41T,71D,83L,86A,87Q,96I,110N,116T,120A,148V,169F,178T,180D,203R,208G,225S |
| MT781762 | 1-0526-9 | Malawi | 22-Jul-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,10Y,14P,15L,27I,31G,41T,71D,83L,91N,92P,93Q,110N,116A,120G,128D,148V,154K,160S,169F,178T,180D,187D,203R,208G,210S |
| MT781763 | 1-0527-6 | Malawi | 22-Jul-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,36I,41T,71D,83L,91V,115V,116A,120A,128D,148V,154K,169F,178T,187D,203R,208G,210S,225S |
| MT781764 | 1-0533-1 | Malawi | 22-Jul-2016 | | genomic RNA | | subtype:01_AE(1.1%),A1(0.3%),B(0.1%),C(98.1%),G(0.4%) | 1 | 231 | 6F,14P,15V,27I,41T,71D,83L,86T,91L,92V,93Q,116A,120S,128D,132K,136M,148V,154K,169F,171C,178T,180D,187D,191S,200I,203R,204G,208G,225A |
| MT781765 | 1-0535-6 | Malawi | 26-Jul-2016 | | genomic RNA | | subtype: C(99.7%),D(0.3%) | 1 | 231 | 6M,14P,27I,41T,71D,83L,96I,116A,128D,148V,154K,169F,178T,187D,200M,204G,208G,210S |
| MT781766 | 1-0539-8 | Malawi | 26-Jul-2016 | | genomic RNA | | subtype: C(100.0%),J(0.0%) | 1 | 231 | 3I,6L,15M,27I,41T,56F,71D,83T,91V,116A,120S,148V,154K,169F,178T,180D,207A,208G |
| MT781767 | 1-0540-6 | Malawi | 29-Jul-2016 | | genomic RNA | | subtype: C(99.7%),F1(0.0%),F2(0.3%) | 1 | 231 | 6L,14P,27I,31G,33N,41T,71D,83L,91V,110N,116A,120G,123A,128D,148V,154K,169F,178T,180D,187D,203R,208G |
| MT781768 | 1-0541-5 | Malawi | 29-Jul-2016 | | genomic RNA | | subtype: B(0.6%),C(99.0%),D(0.2%),F1(0.2%) | 1 | 231 | 6L,10H,14P,15L,27I,41T,71D,83M,96I,116A,128D,148V,178T,203R,204G,208G,225S |
| MT781769 | 1-0543-2 | Malawi | 01-Aug-2016 | | genomic RNA | | subtype: C(100.0%),D(0.0%) | 1 | 231 | 6L,15L,27I,31S,41T,71D,83L,91V,110N,116A,120S,128D,148V,154K,169F,178T,180D,187D,200V,203R,204G,208G |
| MT781770 | 1-0549-3 | Malawi | 01-Aug-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,13N,14P,27I,36I,41T,71D,91V,96L,116A,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S |
| MT781771 | 1-0550-1 | Malawi | 03-Aug-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14S,27I,41T,71D,83L,87Q,91V,107A,115V,116A,120S,124V,128D,148V,154K,169F,178T,183G,187D,203R,208G,210S |
| MT781772 | 1-0552-6 | Malawi | 03-Aug-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14S,27I,41T,71D,75D,83L,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S |
| MT781773 | 1-0554-3 | Malawi | 04-Aug-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6M,14P,41T,71D,83L,91V,107A,110N,116A,120G,123A,128D,136M,148V,154K,169F,171A,178T,180D,187D,203R,204G,208G,225S |
| MT781774 | 1-0555-4 | Malawi | 08-Aug-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14S,16T,27I,41T,75D,83T,91V,107S,116A,120S,128D,148V,154K,169F,171A,178T,180D,187D,207Q,208G |
| MT781775 | 1-0556-0 | Malawi | 08-Aug-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,11M,27I,41T,68I,71D,83L,116A,120S,128D,148V,154K,169F,171C,178T,181I,187D,207Q,208G |
| MT781776 | 1-0561-7 | Malawi | 08-Aug-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,31G,33N,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,187D,203R,204G,207Q,208G,225S |
| MT781777 | 1-0562-1 | Malawi | 11-Aug-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,15L,27I,31G,41T,71D,83L,91V,110N,116A,128D,148V,154K,169F,178T,180D,203R,208G,225S |
| MT781778 | 1-0569-2 | Malawi | 12-Aug-2016 | | genomic RNA | | subtype: C(99.7%),F1(0.3%) | 1 | 231 | 2V,6L,10W,15M,16T,41T,50S,54S,71D,83L,91V,96L,116A,124V,148V,154K,169F,171A,178T,180D,187D,203R,204G,208G,210S,225S |
| MT781779 | 1-0572-3 | Malawi | 17-Aug-2016 | | genomic RNA | | subtype: C(99.7%),D(0.3%) | 1 | 231 | 6L,15M,41A,71D,83L,86P,87Q,91V,96I,116T,120A,124V,128D,136I,148V,169F,178T,180D,187D,200I,203R,204G,208G |
| MT781780 | 1-0573-9 | Malawi | 19-Aug-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,27I,41T,75D,77I,83L,91V,116A,120S,124V,128D,148V,169F,171V,178T,180D,191I,203R,225S |
| MT781781 | 1-0575-1 | Malawi | 19-Aug-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,41T,71D,83T,91V,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G |
| MT781782 | 1-0581-4 | Malawi | 20-Aug-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,33N,41T,71D,83L,120S,124V,148V,154K,169F,178T,180D,203R,208G,209P,210S |
| MT781783 | 1-0585-5 | Malawi | 23-Aug-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,41T,71D,83S,91N,92P,93V,96L,98D,116A,120A,128D,148V,154K,169F,178T,180D,187D,200I,203R,204G,208G |
| MT781784 | 1-0593-6 | Malawi | 23-Aug-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,15L,27I,41T,50A,71D,83L,86A,87Q,91N,92P,93A,96I,116T,120A,135V,148V,169F,178T,187D,203R,208G,210S |
| MT781785 | 1-0594-8 | Malawi | 29-Aug-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,36I,41T,71D,83M,91V,120A,123A,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S |
| MT781786 | 1-0596-4 | Malawi | 29-Aug-2016 | | genomic RNA | | subtype: C(99.5%),J(0.5%) | 1 | 231 | 6L,14P,27I,31G,33N,41T,71D,75D,83T,94N,96I,107S,116T,120S,124V,135V,148V,169F,178T,180D,203R,213D,225S |
| MT781787 | 1-0597-5 | Malawi | 31-Aug-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,15L,31G,33N,41T,71D,83L,96I,107A,116I,118I,119T_GSQ,122Q,123A,148V,154K,169F,178T,183G,187D,200V,204G,207S,208G,225S |
| MT781788 | 1-0604-0 | Malawi | 31-Aug-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14S,27I,41T,71D,91V,107A,116A,120S,128D,148V,154K,169F,178T,183G,187D,191I,203R,208G,210S |
| MT781789 | 1-0605-6 | Malawi | 03-Sep-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14S,27I,36I,41T,71D,83L,87Q,91A,96L,110N,115V,116A,120A,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S |
| MT781790 | 1-0607-2 | Malawi | 03-Sep-2016 | | genomic RNA | | subtype: C(99.5%),F1(0.5%) | 1 | 231 | 6A,27I,41T,71D,83L,116A,120S,148V,154K,169F,178T,187D,203R,208G,210S,225S |
| MT781791 | 1-0608-5 | Malawi | 06-Sep-2016 | | genomic RNA | | subtype: C(99.6%),F2(0.4%) | 1 | 231 | 6A,27I,41T,71D,91V,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S |
| MT781792 | 1-0615-0 | Malawi | 06-Sep-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,83L,91A,116A,120S,124V,128D,148V,154K,169F,177C,178T,180D,187D,200I,204G,208G |
| MT781794 | 1-0623-7 | Malawi | 13-Sep-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,11I,14P,27I,41T,50S,71D,83L,96I,110N,111P,115L,116A,120S,128D,135V,148V,154K,169F,178T,187D,203R,208G |
| MT781795 | 1-0624-3 | Malawi | 13-Sep-2016 | | genomic RNA | | subtype: C(99.8%),F1(0.1%),G(0.1%) | 1 | 231 | 6L,27I,41T,83L,91P,110N,116N,120A,148V,154K,180D,200I,204G,208G,225S |
| MT781796 | 1-0629-5 | Malawi | 14-Sep-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,50A,71D,83L,91H,92P,93A,116A,120S,128D,148V,154K,169F,171C,178T,180D,187D,203R,204G,207Q,208G |
| MT781797 | 1-0637-4 | Malawi | 20-Sep-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,10W,27I,41T,50S,54S,71D,75D,83T,91V,107S,116Q,120S,124V,141V,148V,154K,169F,178T,180D,187D,203R,208G,225S |
| MT781798 | 1-0639-6 | Malawi | 20-Sep-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,10W,14P,16T,41T,71D,83L,110N,116A,120G,128D,136M,148V,154K,169F,178T,180D,187D,203R,204G,207Q,208G,210S,225S |
| MT781799 | 1-0647-8 | Malawi | 23-Sep-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14S,15L,27I,41T,45D,54S,68I,71D,83L,86P,87Q,91V,98D,107S,116A,120A,124V,128D,148V,154K,169F,171A,177G,178T,203R,204G,208G,210S,225S |
| MT781800 | 1-0650-8 | Malawi | 27-Sep-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,16T,27I,41T,71D,83L,86I,96I,107A,116T,120A,124V,128D,148V,154K,168W,169F,178T,187D,203R |
| MT781801 | 1-0666-9 | Malawi | 05-Oct-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6V,14P,41T,71D,72S,75D,83L,105I,107S,116A,120G,123A,128D,136I,148V,154K,169F,171A,178T,180D,187D,204G,207S,208G,225S |
| MT781802 | 1-0667-6 | Malawi | 05-Oct-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,31G,33N,41T,71D,91A,116A,120S,124V,148V,154K,169F,178T,180D,187D,199R,203R,208G,225S |
| MT781803 | 1-0668-1 | Malawi | 05-Oct-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,83T,91V,96I,107A,116T,123A,124V,148V,154K,169F,180D,187D,203R,208G,225S |
| MT781804 | 1-0686-8 | Malawi | 12-Oct-2016 | | genomic RNA | | subtype: C(99.9%),F2(0.1%) | 1 | 231 | 6L,14T,15L,27I,41T,50S,71D,83L,91V,116A,120S,124V,128D,146C,148V,169F,178T,208G |
| MT781805 | 1-0687-1 | Malawi | 13-Oct-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14P,16T,27I,31N,41T,59I,71D,83T,91V,96I,110N,116A,120G,122Q,148V,154K,169F,178T,180D,187D,203R,208G,210S |
| MT781806 | 1-0694-6 | Malawi | 19-Oct-2016 | | genomic RNA | | subtype: A1(0.2%),C(99.8%) | 1 | 231 | 6A,14S,15L,41T,50S,54S,58A,71D,83L,86A,87Q,91V,96V,116A,120S,128D,148V,154K,169F,178T,180D,203R,208G |
| MT781807 | 1-0702-0 | Malawi | 20-Oct-2016 | | genomic RNA | | subtype: C(99.9%),F2(0.1%) | 1 | 231 | 6A,14P,31N,41T,59I,71D,72A,83L,110N,116A,120A,148V,154K,169F,178T,180D,187D,203R,204G,208G,230I |
| MT781808 | 1-0706-8 | Malawi | 21-Oct-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,10H,15L,27I,41T,71D,83T,86I,87P,91L,96L,98D,107S,116A,148V,154K,169F,171V,178T,183H,187D,203R,208G,225S |
| MT781809 | 1-0720-2 | Malawi | 27-Oct-2016 | | genomic RNA | | subtype: A1(0.1%),C(99.8%),D(0.1%) | 1 | 231 | 6L,14P,15L,27I,31N,41T,59I,71D,83L,86A,91V,96I,107S,110N,116Q,118I,120G,124V,148V,154K,169F,171A,178T,180D,187D,203R,204G,208G,225A |
| MT781810 | 1-0721-1 | Malawi | 27-Oct-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 3L,6A,11A,12Y,14S,27I,71D,83L,91A,116A,120S,128D,136M,148V,154K,169F,171V,178T,180D,187D,200I,204G,208G,225S |
| MT781811 | 1-0727-5 | Malawi | 29-Oct-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14N,27I,41T,59I,71D,83L,91V,107A,110N,112S,116A,120S,124V,128D,148V,169F,178T,180D,187D,207S,208G |
| MT781812 | 1-0728-3 | Malawi | 01-Nov-2016 | | genomic RNA | | subtype: A1(0.5%),C(99.3%),J(0.2%) | 1 | 231 | 6A,14S,15L,27I,41T,44A,50H,68I,83L,108S,116A,120S,128D,148V,169F,170R,171C,178T,180D,203R,204G,207Q,208G |
| MT781813 | 1-0729-9 | Malawi | 01-Nov-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 14P,17A,41T,71D,78V,83L,87Q,91V,96I,116T,120S,128D,148V,154K,169F,178T,187D,203R,204G,207Q,208G |
| MT781814 | 1-0736-1 | Malawi | 05-Nov-2016 | | genomic RNA | | subtype: C(99.1%),J(0.9%) | 1 | 231 | 6L,27I,31G,33N,41T,71D,83A,91V,107S,116A,120G,123A,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S |
| MT781815 | 1-0737-0 | Malawi | 07-Nov-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14S,15L,27I,41T,68L,71D,83L,91V,96L,116A,124V,128D,148V,154K,169F,172I,183T,187D,225S |
| MT781816 | 1-0740-5 | Malawi | 08-Nov-2016 | | genomic RNA | | subtype: 01_AE(0.8%),C(99.2%) | 1 | 231 | 4P,6A,12Y,14S,41T,71D,115V,116A,120S,124V,148V,154K,169F,171I,180D,187D,203R,204G,208G,225S |
| MT781817 | 1-0745-8 | Malawi | 09-Nov-2016 | | genomic RNA | | subtype: C(99.0%),J(0.5%),K(0.5%) | 1 | 231 | 6H,27I,41T,71D,83L,107A,116A,123~,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S |
| MT781818 | 1-0746-7 | Malawi | 09-Nov-2016 | | genomic RNA | | subtype: C(99.9%),F2(0.1%) | 1 | 231 | 14P,15L,27I,31N,41V,59I,71D,91V,110N,116A,120S,124V,132K,135V,148V,169F,178T,180D,203R,208G,225S |
| MT781819 | 1-0749-1 | Malawi | 09-Nov-2016 | | genomic RNA | | subtype: C(100.0%),J(0.0%) | 1 | 231 | 6V,14P,15L,27I,41T,71D,83L,86A,87Q,91V,96I,116T,148V,154K,169F,178T,180D,187D,203R,204G,207Q,208G,210S,225S |
| MT781820 | 1-0752-5 | Malawi | 11-Nov-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14S,27I,29D,41T,71D,83L,91V,116A,120S,124V,128D,148V,169F,178T,180D,187D,203R,208G,225S |
| MT781821 | 1-0754-1 | Malawi | 14-Nov-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,27I,31N,41T,71D,83L,115V,116A,120G,123A,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S |
| MT781822 | 1-0757-4 | Malawi | 14-Nov-2016 | | genomic RNA | | subtype: C(99.9%),D(0.1%) | 1 | 231 | 6L,15L,27I,31N,41T,71D,83L,86I,91N,92P,116A,120G,123A,128D,136M,148V,169F,178T,187D,191I,203R,204G,208G |
| MT781823 | 1-0759-6 | Malawi | 15-Nov-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,83L,116A,120G,124V,128D,136M,148V,169F,178T,180D,203R,208G,225S |
| MT781824 | 1-0762-3 | Malawi | 16-Nov-2016 | | genomic RNA | | subtype: C(98.1%),F1(1.3%),J(0.6%) | 1 | 231 | 6L,14S,15L,27I,36I,41T,71D,83L,91V,115V,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S |
| MT781825 | 1-0765-1 | Malawi | 18-Nov-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,10L,15L,27I,31N,41T,50S,54S,71D,83L,86A,87Q,91V,96L,115V,116A,120A,128D,148V,154K,169F,178T,187D,200I,204G,207S,208G,225S |
| MT781826 | 1-0768-2 | Malawi | 18-Nov-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,15L,27I,31N,41T,59I,71D,83L,91V,110N,116A,120S,124V,148V,163E,169F,178T,180D,183H,203R,207Q,208G,225S |
| MT781827 | 1-0776-6 | Malawi | 23-Nov-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14S,15L,27I,41T,71D,86P,87Q,91H,92P,96I,116T,120S,148V,154K,169F,171C,178T,187D,200V,204G,208G,210S |
| MT781828 | 1-0779-2 | Malawi | 23-Nov-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,36I,41T,71D,83L,87Q,91V,96I,116A,148V,154K,169F,178T,183R,203R,208G,225S |
| MT781830 | 1-0786-3 | Malawi | 28-Nov-2016 | | genomic RNA | | subtype: A2(0.1%),C(99.9%) | 1 | 231 | 6L,27I,41T,71D,83L,116N,120G,124V,148V,154K,169F,171V,178T,187D,203R,204G,208G,225S |
| MT781831 | 1-0788-5 | Malawi | 29-Nov-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,10H,27I,41T,71D,83M,91V,116A,120S,128D,148V,154K,180D,187D,200I,204G,208G |
| MT781832 | 1-0795-2 | Malawi | 01-Dec-2016 | | genomic RNA | | subtype: A1(0.0%),C(99.8%),F1(0.2%) | 1 | 231 | 6L,15L,27I,41T,71D,91V,107A,116T,120S,124V,128D,148V,154K,169F,178T,203R,204G,208G,225S |
| MT781833 | 1-0806-1 | Malawi | 06-Dec-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,177S,178T,200N,203R,207S,208G |
| MT781834 | 1-0807-0 | Malawi | 06-Dec-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 2V,3L,6A,11T,12Y,14S,15L,27I,41T,71D,83T,91V,96I,110N,116A,120S,148V,154K,169F,178T,180D,187D,191I,199R,203R,208G,210S,225S |
| MT781835 | 1-0808-6 | Malawi | 06-Dec-2016 | | genomic RNA | | subtype: C(99.8%),D(0.2%) | 1 | 231 | 6A,27I,41T,71D,75D,83L,91V,96L,102A,116A,120A,128D,148V,169F,180D,203R,208G,210S,225S,230I |
| MT781836 | 1-0815-2 | Malawi | 07-Dec-2016 | | genomic RNA | | subtype: C(98.9%),F1(0.6%),F2(0.5%) | 1 | 231 | 6L,14S,15L,27I,41T,71D,83L,116A,124V,148V,154K,169F,178T,187D,199R,200N,208G |
| MT781837 | 1-0816-9 | Malawi | 08-Dec-2016 | | genomic RNA | | subtype: A1(0.2%),C(99.8%) | 1 | 231 | 6A,9A,14P,15L,16T,27I,31N,41T,71D,83L,110N,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G,210S |
| MT781838 | 1-0825-9 | Malawi | 13-Dec-2016 | | genomic RNA | | subtype: C(99.9%),K(0.1%) | 1 | 231 | 6L,27I,41T,71D,83L,91V,116N,118I,120G,148V,154K,169F,178T,180D,187D,200I,203R,204G,208G |
| MT781839 | 1-0835-4 | Malawi | 15-Dec-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 2V,6L,15L,16T,27I,31N,41T,50S,54S,71D,83L,87Q,91Y,92P,96L,98D,115V,116T,120S,148V,154K,169F,178T,180D,187D,200I,203R,204G,208G,210S,225S |
| MT781840 | 1-0837-9 | Malawi | 16-Dec-2016 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,83L,86A,87Q,91V,98D,116A,120S,124V,148V,154K,169F,171V,180D,187D,208G,210S,225S,230I |
| MT781841 | 1-0839-5 | Malawi | 04-Jan-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,10H,14P,15L,27I,41T,71D,91V,116A,120S,124V,148V,163E,169F,171V,178T,180D,187D,208G,210N,225S |
| MT781842 | 1-0840-4 | Malawi | 05-Jan-2017 | | genomic RNA | | subtype: B(0.1%),C(99.9%) | 1 | 231 | 6A,14P,33N,41T,71D,83L,116A,120S,128D,148V,154K,169F,178T,180D,187D,200N,203R,208G,210S |
| MT781843 | 1-0841-8 | Malawi | 05-Jan-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,41T,71D,116Q,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G |
| MT781844 | 1-0849-0 | Malawi | 09-Jan-2017 | | genomic RNA | | subtype: C(98.4%),D(0.3%),F2(1.3%) | 1 | 231 | 6A,14P,27I,44A,50S,54L,71D,83L,110N,116A,128D,148V,154K,169F,178T,180D,191I,207Q,208G,210S |
| MT781845 | 1-0859-8 | Malawi | 12-Jan-2017 | | genomic RNA | | subtype: B(0.2%),C(99.6%),G(0.1%),K(0.1%) | 1 | 231 | 6M,14P,27I,41T,71D,83L,91A,116A,120S,128D,148V,154K,169F,170R,171V,178T,180D,187D,200I,204G,207Q,208G,210S,225S |
| MT781846 | 1-0860-2 | Malawi | 12-Jan-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,83L,91V,96L,107S,116A,120A,124V,128D,148V,154K,169F,178T,180D,203R,210S |
| MT781847 | 1-0868-3 | Malawi | 19-Jan-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14S,27I,41T,71D,83L,91V,116Q,120S,124V,128D,148V,154K,169F,178T,188S,191I,203R,208G |
| MT781848 | 1-0870-6 | Malawi | 19-Jan-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,83L,87Q,91V,107A,116A,120S,124V,128D,136M,148V,154K,169F,178T,183G,187D,203R,208G,210S,225S |
| MT781849 | 1-0871-5 | Malawi | 19-Jan-2017 | | genomic RNA | | subtype: C(100.0%),G(0.0%) | 1 | 231 | 6V,14P,15L,27I,41T,71D,83L,91A,96I,110N,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S |
| MT781850 | 1-0878-9 | Malawi | 23-Jan-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 27I,41T,71D,83L,116A,118T,120G,123A,128D,148V,154K,169F,178T,180D,187D,191I,200I,204G,207Q,208G,210S |
| MT781851 | 1-0879-3 | Malawi | 23-Jan-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,41T,71D,83L,116A,124V,148V,154K,169F,178T,187D,199R,200N,208G |
| MT781852 | 1-0883-0 | Malawi | 24-Jan-2017 | | genomic RNA | | subtype: C(99.5%),F1(0.5%) | 1 | 231 | 6L,14S,15L,27I,41T,71D,116A,124V,148V,154K,169F,178T,180D,187D,200I,203R,204G,208G |
| MT781853 | 1-0895-3 | Malawi | 31-Jan-2017 | | genomic RNA | | subtype: C(100.0%),J(0.0%) | 1 | 231 | 6L,27I,41T,71D,83L,91V,110N,116A,120S,128D,148V,154K,169F,177S,187D,203R,208G |
| MT781854 | 1-0896-6 | Malawi | 31-Jan-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14P,27I,41T,75D,77I,83L,91V,110N,116A,120S,128D,148V,154K,169F,178T,180D,183M,203R,208G |
| MT781855 | 1-0899-2 | Malawi | 01-Feb-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14S,27I,36I,41T,58I,71D,78V,91V,116A,120S,128D,148V,169F,171A,178T,180D,187D,200I,204G,208G,225S |
| MT781856 | 1-0903-7 | Malawi | 01-Feb-2017 | | genomic RNA | | subtype: C(99.8%),D(0.2%) | 1 | 231 | 6L,14P,15L,26I,31S,33N,41T,54S,59I,71D,83L,91V,96L,116A,128D,148V,154K,169F,171V,178T,187D,203R,204G,207A,208G,210S,225S |
| MT781857 | 1-0910-9 | Malawi | 03-Feb-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,10H,27I,41T,71D,77V,83L,91V,107A,116A,120S,128D,148V,154K,169F,177S,178T,179S,183A,187D,200S,203R,207A,208G |
| MT781858 | 1-0914-5 | Malawi | 03-Feb-2017 | | genomic RNA | | subtype: C(100.0%),H(0.0%) | 1 | 231 | 6L,15M,27I,36I,41T,71D,75D,83L,87Q,91V,96I,102G,116T,120S,148V,169F,178T,187D,203R,204G,208G |
| MT781859 | 1-0918-0 | Malawi | 06-Feb-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,15L,27I,41T,71D,86A,87Q,91V,96I,98D,116T,120S,121T,148V,154K,169F,171V,178T,180D,187D,203R,210S,225S |
| MT781860 | 1-0923-1 | Malawi | 08-Feb-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,54S,68I,71D,79D,83L,91V,116A,120S,124V,148V,154K,169F,177C,178T,180D,187D,203R,208G,211I,225S |
| MT781861 | 1-0930-0 | Malawi | 13-Feb-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,83I,91V,116A,120S,124V,148V,154K,169F,178T,200V,203R,204G,208G |
| MT781862 | 1-0934-7 | Malawi | 14-Feb-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6V,54S,58A,71D,78V,83L,116A,120G,123A,148V,154K,169F,178T,180D,187D,208G |
| MT781863 | 1-0938-1 | Malawi | 17-Feb-2017 | | genomic RNA | | subtype: C(99.5%),F1(0.5%) | 1 | 231 | 6A,14P,15L,16T,31N,36I,41I,71D,83L,91V,116A,120S,128D,135T,148V,154K,169F,178T,180D,203R,208G,210S,225S |
| MT781864 | 1-0940-2 | Malawi | 17-Feb-2017 | | genomic RNA | | subtype: C(99.8%),J(0.2%) | 1 | 231 | 6L,14N,15L,31S,41T,59I,71D,116A,120S,148V,169F,178T,180D,187D,200I,204G,208G |
| MT781865 | 1-0944-8 | Malawi | 20-Feb-2017 | | genomic RNA | | subtype: C(98.9%),D(1.0%),F2(0.1%) | 1 | 231 | 6M,14S,27I,31G,33N,41T,54S,58I,71D,83L,115V,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G,210S,211I,225S |
| MT781866 | 1-0946-4 | Malawi | 21-Feb-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,27I,41T,71D,83L,86A,87Q,91V,96I,107S,110N,116A,120S,148V,154K,169F,178T,180D,187D,203R,208G,210S,225S |
| MT781867 | 1-0947-5 | Malawi | 21-Feb-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 27I,41T,71D,83L,86A,87Q,91V,96I,116T,120S,124V,148V,154K,169F,178T,180D,187D,203R,208G,225S |
| MT781868 | 1-0953-0 | Malawi | 23-Feb-2017 | | genomic RNA | | subtype: C(99.9%),G(0.1%) | 1 | 231 | 6L,27I,41T,71D,83L,87Q,91V,96I,107S,116T,120S,128D,136M,148V,153V,154K,169F,171I,178T,187D,204G,208G,225S |
| MT781869 | 1-0954-9 | Malawi | 23-Feb-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,16T,41T,83T,91V,107A,116A,120S,128D,148V,154K,178T,180D,200I,204G,208G |
| MT781870 | 1-0956-7 | Malawi | 24-Feb-2017 | | genomic RNA | | subtype: C(99.8%),F1(0.2%) | 1 | 231 | 6L,15L,41T,68I,71D,91A,116A,120S,124V,128D,148V,154K,169F,178T,187D,208G,210S,211V,225S |
| MT781871 | 1-0958-4 | Malawi | 27-Feb-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,16T,27I,41T,71D,83L,91V,107A,116A,120S,124V,128D,136M,148V,154K,169F,177C,178T,180D,187D,207M,208G,225S |
| MT781872 | 1-0959-1 | Malawi | 27-Feb-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,41T,77I,83L,105T,107N,116A,120S,124V,148V,154K,169F,171V,178T,180D,203R,230I |
| MT781873 | 1-0968-7 | Malawi | 06-Mar-2017 | | genomic RNA | | subtype: B(0.2%),C(98.7%),D(0.1%),F1(0.3%),F2(0.7%) | 1 | 231 | 6L,14S,15L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171C,177S,178T,187D,203R,207S,208G,225S |
| MT781874 | 1-0970-8 | Malawi | 07-Mar-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,41T,54S,58I,71D,86P,87R,91V,98D,116A,120G,123A,128D,148V,169F,177S,178T,187D,203R,208G,210S,225S |
| MT781875 | 1-0998-9 | Malawi | 15-Mar-2017 | | genomic RNA | | subtype: C(99.8%),F1(0.2%) | 1 | 231 | 6L,27I,36I,41T,71D,83L,91V,116A,124V,128D,148V,154K,169F,178T,183G,187D,203R,208G,225S |
| MT781876 | 1-1001-4 | Malawi | 16-Mar-2017 | | genomic RNA | | subtype: A1(1.2%),C(98.8%) | 1 | 231 | 6A,13V,14P,16T,27I,31N,41T,71D,83L,86I,116A,120S,128D,148V,154K,165M,169F,180D,187D,200L,204G,207Q,208G,225S |
| MT781877 | 1-1008-6 | Malawi | 17-Mar-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6T,12Y,14N,27I,41T,71D,83T,91V,107A,116A,120S,128D,148V,169F,178T,180D,203R,208G,210S,225S |
| MT781878 | 1-1013-5 | Malawi | 21-Mar-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,10P,27I,58A,71D,83L,91V,96L,112N,115V,116Q,120G,128D,148V,154K,169F,178T,180D,203R,207T,208G |
| MT781879 | 1-1035-4 | Malawi | 31-Mar-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,41T,71D,75D,81D_VASSAGRARCTRPNKRTKGK*CWXXDHNYLQGQMVHQALSPRTLNAWVKVIEEKAFSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINDEAAEWD,83L,87Q,91V,96I,110N,116A,120S,148V,154K,169F,178T,183G,187D,203R,208G,225S |
| MT781880 | 1-1036-0 | Malawi | 31-Mar-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,41T,50S,54S,71D,83M,86P,87Q,91V,96I,116T,120S,148V,169F,178T,208G,210S,225S |
| MT781881 | 1-1037-9 | Malawi | 31-Mar-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,83T,87P,91V,96I,98D,116T,128D,148V,154K,169F,178T,180D,187D,203R,208G |
| MT781882 | 1-1040-4 | Malawi | 04-Apr-2017 | | genomic RNA | | subtype: C(99.9%),D(0.1%) | 1 | 231 | 6L,14N,27I,41T,71D,83L,91V,116A,118I,120G,148V,154K,169F,178T,180D,187D,203R,208G,210S |
| MT781883 | 1-1045-1 | Malawi | 05-Apr-2017 | | genomic RNA | | subtype: 01_AE(0.3%),C(99.3%),F1(0.1%),F2(0.3%) | 1 | 231 | 6L,14P,27I,41T,71D,83L,110N,116A,120G,123A,128D,148V,154K,169F,177S,187D,191I,207T,208G,225S,230I |
| MT781884 | 1-1058-5 | Malawi | 12-Apr-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,41T,71D,83L,87Q,91V,107A,110N,116N,120A,146C,148V,154K,169F,183G,187D,208G,210S |
| MT781885 | 1-1063-6 | Malawi | 18-Apr-2017 | | genomic RNA | | subtype: C(99.9%),J(0.1%) | 1 | 231 | 6A,14S,27I,41T,71D,78V,83T,86M,87P,91L,96L,98D,116T,120A,121T,148V,154K,169F,178T,180D,187D,203R,208G,210S |
| MT781886 | 1-1065-0 | Malawi | 19-Apr-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6V,27I,41T,71D,83L,91V,96I,107S,116A,120S,128D,136I,148V,154K,169F,178T,203R,208G |
| MT781888 | 1-1072-0 | Malawi | 21-Apr-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,27I,41T,71D,83L,91V,107S,116A,120A,123A,128D,148V,154K,169F,177S,187D,203R,208G,225S |
| MT781889 | 1-1080-5 | Malawi | 26-Apr-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14S,15L,27I,41T,71D,83L,91V,94N,116A,120S,124V,128D,136M,148V,169F,178T,180D,203R,208G |
| MT781890 | 1-1081-6 | Malawi | 26-Apr-2017 | | genomic RNA | | subtype: A1(2.2%),C(96.8%),D(0.4%),F2(0.5%),K(0.1%) | 1 | 231 | 6L,14P,15L,27I,41T,71D,78T,83L,91V,116A,120S,128D,148V,154K,169F,171I,178T,200S,203R,208N,210S,225S |
| MT781891 | 1-1082-2 | Malawi | 26-Apr-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,41T,71D,83L,91A,116A,120G,124F,128D,136M,148V,154K,169F,178T,180D,200I,203R,204G,208G |
| MT781892 | 1-1084-9 | Malawi | 27-Apr-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,27I,41T,71D,83L,87Q,91V,116A,120G,148V,154K,169F,178T,180D,187D,203R,208G,210S |
| MT781893 | 1-1096-6 | Malawi | 09-May-2017 | | genomic RNA | | subtype: B(0.1%),C(99.9%) | 1 | 231 | 6L,27I,41T,71D,83M,87Q,96I,110N,116A,120S,124V,148V,154K,169F,178T,180D,187D,203R,208G |
| MT781894 | 1-1099-2 | Malawi | 09-May-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14S,27I,41T,71D,83L,86I,91V,115V,116A,120S,128D,148V,154K,169F,178T,203R,204G,207Q,208G,210S |
| MT781895 | 1-1108-9 | Malawi | 16-May-2017 | | genomic RNA | | subtype: C(100.0%),J(0.0%) | 1 | 231 | 6A,14P,16T,27I,31N,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,183H,187D,203R,208G |
| MT781896 | 1-1110-1 | Malawi | 17-May-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,41T,71D,96V,107S,116A,120S,148V,154K,169F,171A,178T,180D,187D,203R,204G,208G,225S |
| MT781897 | 1-1115-4 | Malawi | 17-May-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,27I,41T,71D,83L,86P,87Q,91V,96I,98D,107A,116T,120A,128D,148V,154K,169F,171A,178T,180D,203R,204G,207Q,208G,210S,225S |
| MT781898 | 1-1116-0 | Malawi | 18-May-2017 | | genomic RNA | | subtype: C(99.5%),G(0.5%) | 1 | 231 | 6A,14P,27I,41T,71D,83L,87Q,96I,110N,116A,120G,123G,148V,154K,169F,178T,180D,187D,203R,208G |
| MT781899 | 1-1119-5 | Malawi | 18-May-2017 | | genomic RNA | | subtype: C(100.0%),J(0.0%) | 1 | 231 | 3I,6L,15L,27I,41T,71D,83L,86P,87Q,91V,96I,98D,110N,116R,120S,128D,148V,154K,169F,180D,187D,191I,200I,204G,207Q,208G,210S |
| MT781900 | 1-1121-1 | Malawi | 22-May-2017 | | genomic RNA | | subtype: A1(1.9%),B(0.1%),C(98.0%) | 1 | 231 | 6A,14S,27I,41T,71D,96I,107A,116T,120S,148V,154K,169F,171C,178T,180D,187D,203R,204G,207A,208G,225S |
| MT781901 | 1-1124-8 | Malawi | 23-May-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,16T,27I,41T,45D,54A,58I,91V,116A,120S,135V,148V,154K,169F,171V,172I,183S,203R,225S |
| MT781902 | 1-1133-3 | Malawi | 30-May-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,41T,83L,96I,100T,116R,120S,128D,148V,169F,177S,178T,187D,208G,225S |
| MT781903 | 1-1141-6 | Malawi | 05-Jun-2017 | | genomic RNA | | subtype: 01_AE(0.1%),C(99.2%),D(0.4%),G(0.2%) | 1 | 231 | 6L,14P,27I,41T,71D,83L,87Q,92P,96I,107A,116T,120Q,122Q,128D,148V,154K,169F,178T,187D,200V,203R,204G,208G,225S |
| MT781904 | 1-1143-0 | Malawi | 06-Jun-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,27I,33N,41T,71D,96I,116A,120A,128D,148V,154K,169F,171C,178T,183H,203R,204G,207Q,208G,210S,225S |
| MT781905 | 1-1148-4 | Malawi | 09-Jun-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,15L,27I,31S,41T,68I,71D,83L,91N,92P,116A,120G,124V,135V,148V,154K,169F,177G,178T,187D,203R,204G,208G,210S |
| MT781906 | 1-1150-3 | Malawi | 12-Jun-2017 | | genomic RNA | | subtype: 01_AE(0.2%),B(0.2%),C(99.6%) | 1 | 231 | 6A,14P,16T,27I,41T,71D,83L,110N,116A,120S,128D,148V,154K,169F,178T,180D,207T,208G,210S |
| MT781907 | 1-1152-5 | Malawi | 13-Jun-2017 | | genomic RNA | | subtype: C(98.8%),D(1.2%) | 1 | 231 | 6L,27I,41T,71D,83L,96L,116A,120H,128D,148V,154K,169F,177S,178T,187D,203R,208G |
| MT781908 | 1-1162-3 | Malawi | 19-Jun-2017 | | genomic RNA | | subtype: C(99.7%),J(0.3%) | 1 | 231 | 6A,11A,12Y,14S,16T,27I,41T,71D,75D,83L,116A,120A,128D,148V,154K,169F,171V,178T,183G,187D,191I,200N,207T,208G |
| MT781909 | 1-1165-1 | Malawi | 20-Jun-2017 | | genomic RNA | | subtype: C(99.9%),F2(0.1%),H(0.0%) | 1 | 231 | 6L,15L,27I,41T,71D,83L,116A,120S,128D,136M,148V,169F,178T,187D,203R,208G,225S |
| MT781910 | 1-1167-7 | Malawi | 20-Jun-2017 | | genomic RNA | | subtype: C(99.0%),D(1.0%) | 1 | 231 | 14P,15L,27I,41T,71D,83L,87Q,91V,110N,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G,225S |
| MT781911 | 1-1168-2 | Malawi | 20-Jun-2017 | | genomic RNA | | subtype: C(99.2%),F2(0.8%) | 1 | 231 | 4R,5D,6L,14P,15L,27I,41T,71D,83T,86I,116A,119S,120G,123P_A,124V,128D,148V,154K,169F,178T,180D,203R,210S,225S |
| MT781912 | 1-1172-1 | Malawi | 23-Jun-2017 | | genomic RNA | | subtype: 01_AE(0.8%),C(98.9%),F1(0.2%) | 1 | 231 | 6L,27I,41T,71D,83L,87Q,91A,96L,116A,128D,148V,154K,169F,177S,187D,207Q,208G |
| MT781913 | 1-1181-9 | Malawi | 29-Jun-2017 | | genomic RNA | | subtype: B(0.5%),C(99.5%) | 1 | 231 | 6L,27I,41T,71D,83M,87Q,91V,96I,98D,110N,116T,120S,124V,148V,154K,169F,178T,180D,187D,203R,208G,225S |
| MT781914 | 1-1182-4 | Malawi | 29-Jun-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14S,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,183H,203R,208G |
| MT781915 | 1-1185-6 | Malawi | 30-Jun-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,41T,71D,83L,87Q,91V,107S,116A,120S,124V,128D,136I,148V,169F,178T,187D,208G,225S |
| MT781916 | 1-1206-7 | Malawi | 13-Jul-2017 | | genomic RNA | | subtype: C(99.4%),G(0.1%),H(0.5%) | 1 | 231 | 6L,14S,15L,27I,36I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,178T,180D,203R,207Q,208G,210S,225S |
| MT781917 | 1-1224-7 | Malawi | 24-Jul-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14S,27I,41T,71D,91V,96L,115V,116A,120A,128D,148V,154K,169F,178T,180D,203R,208G |
| MT781918 | 1-1226-9 | Malawi | 24-Jul-2017 | | genomic RNA | | subtype:01_AE(0.2%),A1(0.6%),C(97.1%),F1(1.0%),H(1.0%) | 1 | 231 | 6A,14S,15L,27I,35E_VIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRLHPVHAGPIAPGQMXXX*EKQWYTSPYHLGP*MHG*K**RKRLLVQ,41T,71D,83L,110N,116A,148V,154K,180D,187D,208G,210N,225A |
| MT781919 | 1-1229-4 | Malawi | 25-Jul-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14S,15L,31G,41T,50G,71D,83L,91V,110N,116A,120G,124V,128D,148V,169F,180D,187D,203R,204G,207Q,208G |
| MT781920 | 1-1231-9 | Malawi | 26-Jul-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6H,14P,15L,27I,41T,50S,71D,83L,110N,116A,120G,128D,148V,154K,169F,171C,178T,187D,203R,204G,207A,208G,225S |
| MT781921 | 1-1232-4 | Malawi | 26-Jul-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,27I,41T,50A,71D,83L,107A,116A,120S,124V,128D,148V,154K,169F,178T,187D,203R,204G,208G,225S |
| MT781922 | 1-1233-1 | Malawi | 26-Jul-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,27I,41T,71D,83L,91V,110N,116N,120A,128D,148V,154K,169F,178T,180D,187D,200I,203R,204G,208G,225S |
| MT781923 | 1-1234-0 | Malawi | 26-Jul-2017 | | genomic RNA | | subtype: C(99.4%),G(0.1%),H(0.5%) | 1 | 231 | 6L,27I,41T,71D,83M,116A,120S,125Q,148V,169F,178T,183H,203R,208G,225S |
| MT781924 | 1-1235-6 | Malawi | 27-Jul-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,10H,27I,41T,59I,71D,75D,83L,91V,96L,116A,124V,135V,136M,148V,154K,169F,171V,178T |
| MT781925 | 1-1236-3 | Malawi | 28-Jul-2017 | | genomic RNA | | subtype: C(100.0%),F1(0.0%) | 1 | 231 | 6L,27I,41T,71D,91V,116A,120S,124V,148V,169F,178T,200V,203R,204G,208G |
| MT781926 | 1-1237-2 | Malawi | 28-Jul-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14S,15L,27I,41T,71D,116A,120S,124V,148V,154K,169F,178T,180D,187D,203R,208G |
| MT781927 | 1-1240-6 | Malawi | 31-Jul-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14S,27I,41T,71D,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,203R,208G |
| MT781928 | 1-1241-5 | Malawi | 01-Aug-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14P,41T,52M,71D,83L,96I,116A,120G,123A,128D,136M,148V,154K,169F,178T,180D,187D,203R,208G,210S |
| MT781929 | 1-1243-2 | Malawi | 01-Aug-2017 | | genomic RNA | | subtype: C(99.8%),D(0.2%),K(0.0%) | 1 | 231 | 6L,27I,71D,83L,91V,96L,116A,120H,128D,148V,154K,169F,177S,178T,187D,208G,225S |
| MT781930 | 1-1244-4 | Malawi | 02-Aug-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,11I,16T,27I,41T,44A,50H,71D,75D,83L,91V,96I,116T,120S,128D,148V,154K,169F,170R,178T,180D,187D,207S,208G |
| MT781931 | 1-1245-7 | Malawi | 02-Aug-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,14P,27I,41T,71D,83L,86P,87Q,91V,96I,116T,120S,128D,148V,154K,169F,170R,178T,180D,187D,203R,208G,225S |
| MT781932 | 1-1247-1 | Malawi | 03-Aug-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,36I,41T,71D,83L,91V,116N,120S,128D,148V,154K,169F,178T,180D,187D,191I,200I,204G,207S,208G,210S,225A |
| MT781933 | 1-1252-6 | Malawi | 07-Aug-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,27I,41T,71D,91V,96V,116T,120S,121T,148V,154K,169F,178T,180D,203R,208G,225S |
| MT781934 | 1-1259-5 | Malawi | 09-Aug-2017 | | genomic RNA | | subtype: C(98.8%),G(1.2%) | 1 | 231 | 6L,14P,15L,27I,31G,33N,41T,71D,83L,107S,110N,112A,116A,120S,124V,135V,148V,154K,169F,178T,180D,187D,203R,208G,225S |
| MT781935 | 1-1260-9 | Malawi | 10-Aug-2017 | | genomic RNA | | subtype: C(99.7%),J(0.0%),K(0.2%) | 1 | 231 | 6L,15L,27I,41T,71D,83L,116A,120S,128D,136M,148V,169F,178T,187D,203R,208G,225S |
| MT781936 | 1-1264-5 | Malawi | 14-Aug-2017 | | genomic RNA | | subtype: A1(1.4%),B(0.5%),C(98.1%) | 1 | 231 | 6V,14P,27I,41T,71D,83L,91V,107S,116A,120S,124V,128D,148V,154K,169F,178T,180D,187D,203R,208G |
| MT781937 | 1-1266-6 | Malawi | 14-Aug-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14S,27I,41T,52M,71D,83T,87Q,96I,116A,120S,128D,148V,154K,169F,171C,178T,180D,203R,204G,207Q,208G,210S,225S |
| MT781938 | 1-1271-8 | Malawi | 16-Aug-2017 | | genomic RNA | | subtype: C(99.7%),F1(0.2%),J(0.0%) | 1 | 231 | 6L,27I,41T,71D,116A,120S,124V,128D,148V,169F,171V,178T,180D,210S,225S |
| MT781939 | 1-1272-3 | Malawi | 16-Aug-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14P,27I,31N,41T,71D,83I,86A,87Q,96I,107A,110N,116A,120A,148V,154K,163E,169F,178T,180D,187D,203R,208G,210S,215L |
| MT781940 | 1-1273-9 | Malawi | | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 3L,6A,11A,12Y,14S,27I,71D,83L,91A,116A,120S,128D,136M,148V,169F,171V,178T,180D,187D,200I,204G,208G,225S |
| MT781941 | 1-1276-5 | Malawi | 18-Aug-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14P,41T,71D,83L,91V,107A,116A,120S,128D,148V,154K,169F,178T,180D,187D,200N,203R,208G |
| MT781942 | 1-1277-7 | Malawi | 21-Aug-2017 | | genomic RNA | | subtype: C(99.9%),D(0.1%) | 1 | 231 | 6L,27I,41T,71D,83L,91V,116A,120S,128D,148V,154K,169F,171C,177S,178T,187D,203R,207S,208G |
| MT781943 | 1-1279-0 | Malawi | 22-Aug-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,41T,50A,71D,83T,91V,116A,120S,128D,148V,154K,169F,178T,180D,187D,200I,203R,204G,208G,210S |
| MT781944 | 1-1287-0 | Malawi | 29-Aug-2017 | | genomic RNA | | subtype: A2(0.0%),C(100.0%) | 1 | 231 | 6L,27I,41T,71D,116A,120S,124V,148V,169F,178T,180D,187D,203R,208G |
| MT781945 | 1-1288-6 | Malawi | 29-Aug-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6L,15L,31N,41T,59I,71D,91P,94N,96L,116A,120A,124V,128D,136M,148V,169F,178T,180D,187D,191I,200I,203R,204G,208G,210S |
| MT781947 | 1-1299-9 | Malawi | 04-Sep-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 3L,6L,11T,12Y,14S,15M,27I,41T,50G,59I,71D,83L,91V,116A,120S,124V,128D,148V,154K,169F,178T,180D,200I,203R,204G,208G |
| MT781948 | 1-1300-7 | Malawi | 04-Sep-2017 | | genomic RNA | | subtype: C(99.9%),F1(0.0%),G(0.0%) | 1 | 231 | 6L,27I,41T,44A,45D,50G,58V,71D,83L,91V,107A,116A,120S,124V,128D,148V,154K,169F,174S,178T,180D,187D,200I,203R,204G,208G |
| MT781949 | 1-1302-4 | Malawi | 05-Sep-2017 | | genomic RNA | | subtype: C(99.7%),D(0.3%),G(0.1%) | 1 | 231 | 6L,14S,27I,41T,54V,71D,83T,91V,116A,120S,124V,128D,135V,148V,154K,167K,169F,178T,180D,200I,204G,208G |
| MT781951 | 1-1309-8 | Malawi | 08-Sep-2017 | | genomic RNA | | subtype: C(100.0%) | 1 | 231 | 6A,14S,27I,41T,50S,71D,83L,91V,96I,116A,120S,128D,148V,154K,169F,178T,187D,200S,203R,208G,225S |
