<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Chen (2017) Fast Dissemination of New HIV-1 CRF02/A1 Recombinants in Pakistan PLoS ONE 11 (12), E0167839 (2016) 1.59e-146 34 34 Naive Cultured PBMC Direct PCR; NGS Molecular epidemiology

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AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
KX232594PK001Pakistan2014genomic RNAsubtype: A112316T,9H,10F,15V,27I,58I,71D,83L,87Q,91V,96I,111P,115V,116A,120A,121T,128D,154K,169F,171A,178T,180D,183G,203R,207T,208G,225S
KX232595PK002Pakistan2014genomic RNAsubtype: A112316A,9H,10Y,15V,27I,41T,54M,58I,71D,83L,87Q,96I,111I,116A,120A,121T,128D,154K,169F,178T,183G,203R,208G
KX232596PK003Pakistan2014genomic RNAsubtype: 02A112316A,14S,15M,27I,54M,58I,71D,83M,86A,87Q,91F,92P,120S,124V,148V,149G,154K,169F,178T,200S,203R,208G,225S
KX232597PK004Pakistan2014genomic RNAsubtype: A112316A,10F,11I,15V,27I,54M,58I,71D,79D,83L,86A,87Q,91M,92P,96I,98D,111I,116A,120A,128D,148S,154K,169F,171V,183G,203R,207T,208G,225S
KX232599PK006Pakistan2014genomic RNAsubtype: 02A112316A,10Y,15M,27I,36I,58V,71D,72A,83L,86I,116A,120G,128D,148V,154K,169F,171S,178T,183G,200A,203R,207T,208G,211I
KX232600PK007Pakistan2014genomic RNAsubtype: A112316A,9H,10F,11I,15V,27I,54M,58I,71D,83L,87P,91V,96I,98D,111P,116T,120A,128D,148V,154K,169F,171V,178T,183G,203R,207T,208G,229K
KX232601PK008Pakistan2014genomic RNAsubtype: 02A112316A,14S,27I,54M,58I,71D,83I,86A,87Q,91F,92P,120S,124V,148V,149G,154K,169F,178T,200N,203R,208G,225S
KX232602PK009Pakistan2014genomic RNAsubtype: C12316L,27I,41T,71D,83L,91V,112A,116A,118I,120G,124V,148I,169F,178T,180D,187D,203R,208G
KX232604PK011Pakistan2014genomic RNAsubtype: 02A112316A,8R,14S,15M,27I,54M,58I,60R,71D,83I,86A,87Q,91F,92P,97K,100K,106R,120S,124V,143K,148V,154K,156R,169F,173K,178T,200S,203R,208G,220R,225S,229K
KX232605PK012Pakistan2014genomic RNAsubtype: 02A112316A,14S,15M,27I,41T,54M,58I,71D,79D,83L,86A,87Q,91L,92P,110N,120S,148V,149G,154K,163E,169F,200S,203R,208G,225S
KX232606PK013Pakistan2014genomic RNAsubtype: A112316A,10F,11I,15V,27I,36I,54M,58I,71D,75D,77I,79D,83Q,86I,91V,111I,115V,116A,120A,128D,148V,154K,169F,171V,178T,183V,187D,204S,207T,208G,225S
KX232607PK014Pakistan2014genomic RNAsubtype: A112316A,9H,10F,14P,15V,27I,54M,58I,71D,83L,110N,111I,116A,120A,128D,148V,154K,169F,171A,178T,183G,203R,204G,207A,208G,210S,225S
KX232608PK015Pakistan2014genomic RNAsubtype: 02A112316A,10F,11I,15V,27I,41T,54M,58I,71D,83L,87Q,91N,92P,111I,116A,120A,128D,154K,169F,178T,203R,208G
KX232609PK016Pakistan2014genomic RNAsubtype: A112316A,10F,15V,27I,54M,58I,71D,83L,86I,96I,111P,116A,120A,128D,148V,149G,154K,169F,171V,183G,203R,207T,208G
KX232610PK017Pakistan2014genomic RNAsubtype: A112316A,10F,15V,27I,54M,58I,71D,83L,86P,87Q,96I,111P,116A,120A,128D,148V,149G,154K,169F,171V,183G,203R,207T,208G
KX232611PK018Pakistan2014genomic RNAsubtype: A112316A,10F,15V,27I,45D,54M,58I,71D,83L,87Q,96I,111I,116A,120A,121T,148V,149G,154K,169F,171V,183G,203R,207T,208G
KX232612PK019Pakistan2014genomic RNAsubtype: CRF02_AG12316A,14S,15M,27I,41T,54M,58I,59I,71D,79D,83L,86A,87Q,91L,92P,110N,120S,148V,149G,154K,169F,178T,200S,203R,208G,225S
KX232613PK020Pakistan2014genomic RNAsubtype: 02A112316A,15V,26A,27I,30R,36I,54M,58V,71D,86I,92Q,128D,131R,148V,154K,169F,180D,183G,200S,203R,207A,208G,210S
KX232614PK021Pakistan2015genomic RNAsubtype: A112316A,9H,10F,11I,15V,27I,36I,48A,54M,58I,71D,83I,108S,111I,116A,120A,148V,154K,169F,171A,178T,183G,200A,203R,207T,208G,225S
KX232615PK023Pakistan2015genomic RNAsubtype: 02A112312V,6A,14S,15M,31G,37V,41T,54M,58I,71D,83T,86A,87Q,91F,92P,110N,120S,135V,139H,148V,149G,154K,169F,178T,187D,200S,203R,208G,225S
KX232616PK024Pakistan2015genomic RNAsubtype: CRF02_AG12316A,14S,15M,27I,54M,58I,71D,79D,83L,87Q,91F,92P,110N,120S,148V,149G,154K,169F,178T,200S,203R,208G
KX232617PK025Pakistan2015genomic RNAsubtype: 02A112316A,14S,15M,27I,54M,58I,71D,79D,83M,86A,87Q,91F,92P,120S,124V,148V,154K,169F,178T,200S,203R,204G,208G,210S,225S
KX232618PK026Pakistan2015genomic RNAsubtype: A112316A,10Y,14V,15M,27I,48A,54M,58I,71D,83L,86M,91L,116A,120S,128D,148V,154K,169F,171V,178T,183G,187D,203R,208G,213D
KX232619PK027Pakistan2014genomic RNAsubtype: A112316A,10F,11I,15M,27I,41T,54M,58I,71D,78V,83L,86I,116A,120A,128D,148V,154K,169F,171V,178T,183S,187D,203R,208G
KX232620PK030Pakistan2015genomic RNAsubtype: A112316A,9H,10Y,11I,15V,27I,54M,58I,71D,83L,87P,91V,96I,98D,111P,116A,120A,128D,148V,154K,169F,171V,178T,183G,203R,207T,208G,225S
KX232621PK031Pakistan2015genomic RNAsubtype: A112316A,10F,11I,15V,27I,54M,58I,71D,83L,87P,91V,96I,98D,111P,116A,120A,128D,148V,154K,169F,171V,178T,183G,203R,207T,208G,225S
KX232622PK032Pakistan2015genomic RNAsubtype: CRF02_AG12316A,14S,27I,41T,54M,58I,71D,83I,86A,87Q,91F,92P,96L,120S,124V,148V,149G,154K,169F,178T,200S,203R,208G,225S
KX232623PK033Pakistan2015genomic RNAsubtype: 02A112316A,9H,10F,15V,27I,54M,58I,71D,83L,111P,116A,120A,128D,154K,169F,171C,178T,183G,203R,207T,208G
KX232624PK034Pakistan2015genomic RNAsubtype: A112316A,10F,11I,12Y,15V,26A,27I,36I,54M,58I,71D,79D,83L,86I,87Q,91V,111P,116A,120A,148V,154K,169F,171V,178T,183G,203R,207T,208G,225S
KX232625PK035Pakistan2015genomic RNAsubtype: CRF02_AG12316A,15V,27I,54M,58I,71D,83I,86A,87Q,91L,92P,96I,120S,148V,149G,154K,169F,178T,200S,203R,208G,225S
KX232626PK036Pakistan2015genomic RNAsubtype: A112316T,10F,12Y,15M,27I,68I,71D,72A,83L,86I,91L,95H,96L,111P,116A,120A,128D,154K,169F,178T,199R,200N,203R,208G,225A
KX232627PK038Pakistan2015genomic RNAsubtype: CRF02_AG12316A,14P,15M,27I,41T,54M,58I,71D,83I,86A,87Q,91L,92P,115V,120S,135V,139H,141L,148V,149G,154K,169F,178T,200S,203R,208G,213D,225S
KX232628PK039Pakistan2015genomic RNAsubtype: CRF02_AG12316A,14S,15M,27I,54M,58I,71D,79D,83L,86A,87Q,91L,92P,120S,148V,149G,154K,169F,178T,200S,203R,208G,225S
KX232629PK040Pakistan2015genomic RNAsubtype: 02A112316A,14S,15M,27I,54M,58I,71D,91V,92P,120S,124V,148V,149G,154K,169F,178T,200S,203R,208G,225S

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