<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Luk (2015) Utility of Unbiased Next-Generation Sequencing for HIV Surveillance PLoS One. 2015 Nov 23;10(11):e0141723 4.89e-146 25 25 Uncertain Plasma NGS Molecular epidemiology

Download sequences

AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
KP7189171130-39Cameroon2006genomic DNAsubtype: CRF37_cpx12316A,11T,15L,41T,54M,58I,71D,83A,92P,120S,148V,169F,171V,178T,200S,207T,208G
KP7189301156-26Cameroon2011genomic DNAsubtype: CRF01_AE12316A,11I,31G,33N,54M,58I,71D,91N,92P,96I,116A,148V,169F,178T,200S,207T,208G
KP718937119-28Cameroon2004genomic DNAsubtype: CRF11_cpx12316A,15V,36I,54V,58I,71D,87Q,91V,110S,120S,131R,148V,154K,169F,178T,183G,187D,200S,203R,208G,225S
KP7189381230-24Cameroon2004genomic DNAsubtype: CRF11_cpx12316A,14N,54M,58I,71D,79D,83T,92P,120S,131R,148V,154K,169F,171I,180D,191I,200S,203R,207T,208G
KP7189291252-11Cameroon2008genomic DNAsubtype: URF12316A,54M,58I,71D,83L,92P,120G,124V,128D,129L,131R,148V,153V,154K,169F,171I,178T,183G,191I,199R,200S,203R,207T,208G,225A
KP718924228-10Cameroon2008genomic DNAsubtype: CRF13_cpx12316A,71D,83T,86L,87P,91L,96I,98D,116V,148V,149G,169F,178T,187D,203R,208G
KP718936260-50Cameroon2004genomic DNAsubtype: CRF11_cpx12316A,11I,54M,58I,71D,92P,116A,120G,124V,128D,131R,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G,210S,225S
KP718914263-26Cameroon2006genomic DNAsubtype: CRF11_cpx12316A,11T,12Y,15V,27I,36I,54M,58I,71D,79D,83L,86A,91M,111V,115M,120G,131R,148V,154K,169F,171V,178T,183T,187D,200S,203R,207A,208G
KP718919280-10Cameroon2007genomic DNAsubtype: URF12316A,15L,31G,33N,54M,58I,71D,83M,86A,91N,92Q,110N,120S,148V,169F,178T,200S,207T,208G
KP71891846-10Cameroon2007genomic DNAsubtype: A12316A,11I,14N,15L,27I,31G,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,180D,200S,203R,207T,208G
KP718920469-66Cameroon2007genomic DNAsubtype: URF12316A,15L,31G,33N,54M,58I,71D,79D,83M,87Q,91H,92P,96I,110N,116A,148V,169F,178T,200S,207T,208G
KP718921567-16Cameroon2007genomic DNAsubtype: URF12316A,14S,15L,27I,31G,33N,54M,58I,71D,83M,91N,92P,110N,120S,148V,169F,178T,200S,207S,208G,210S
KP718922663-13Cameroon2007genomic DNAsubtype: URF12314E,6A,11T,14N,15M,27I,54M,58I,71D,83T,86T,87Q,91H,92P,120S,140E,142I,148V,169F,178T,181D,185L,200S,207T,208G
KP718915740-14Cameroon2006genomic DNAsubtype: G12316A,10P,71D,83M,86Q,87Q,96I,116R,148V,154K,169F,178T,180D,187D,203R,208G
KP718925789-10Cameroon2008genomic DNAsubtype: G12316A,10P,11I,15L,50S,71D,83M,86P,87Q,96I,116R,120S,148V,154K,169F,178T,187D,203R,204G,207S,208G
KP718926833-62Cameroon2008genomic DNAsubtype: CRF13_cpx12316A,71D,83M,86P,87Q,91F,92P,96L,116T,148V,169F,178T,183G,187D,203R,208G
KP718927867-10Cameroon2008genomic DNAsubtype: URF12316A,10P,54A,71D,83L,86M,87Q,92P,96I,116A,120G,128N,148V,169F,178T,183A,187N,203R,207Q,208G,211I
KP718916876-14Cameroon2006genomic DNAsubtype: URF12316L,15L,27I,33N,83L,120S,124Y,126T,128G,129Y,130F,148V,177C,178T,180D,208G,225S,230I
KP718928886-24Cameroon2008genomic DNAsubtype: A12316A,11T,14S,15L,31G,54M,58I,83L,86A,87Q,92P,96L,111P,120G,128D,148V,169F,171V,178T,183H,200S,203R,207T,208G,210S
KP718923920-49Cameroon2007genomic DNAsubtype: G12316A,27I,41T,71D,83L,86Q,87Q,116A,120S,148V,154K,169F,178T,180D,187D,207Q,208G
KP718934A1575Cameroon2002genomic DNAsubtype: CRF11_cpx12316A,54M,58I,71D,78G,83L,92P,96L,120G,131R,148V,154K,169F,171A,178T,199R,200A,203R,207A,208G,225S
KP718935A1774Cameroon2002genomic DNAsubtype: CRF11_cpx12316A,54M,58I,71D,83T,86L,87Q,91L,92P,96I,102G,116A,120G,128D,131R,148V,169F,171A,180D,183G,187D,200S,203R,207T,208G
KP718931B4043-15Cameroon2011genomic DNAsubtype: CRF18_cpx12316A,10P,14P,15M,26A,27I,30R,31G,41T,54M,58I,71D,79D,83T,87Q,92P,96L,110N,135V,148V,169F,178T,183Q,187D,188S,200S,203R,207Q,208G
KP718933CHU2727Cameroon2011genomic DNAsubtype: URF12316A,15M,27I,54M,58I,71D,83L,92P,120S,128D,148V,169F,178T,199R,207T,208G,229K
KP718932CHU3903Cameroon2011genomic DNAsubtype: URF12316A,15V,31G,33N,54M,58I,71D,83M,91N,92P,96I,115V,120S,148V,169F,178T,200S,207T,208G

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