<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
Sanabani (2017) Characterization of Partial and Near Full-Length Genomes of HIV-1 Strains Sampled from Recently Infected Individuals in Sao Paulo, Brazil PLoS ONE 6 (10), E25869 (2011) 1.27e-154 50 50 Naive PBMC Direct PCR Molecular epidemiology

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AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
JN69243102BR1002Brazil2002genomic DNAbuffy coatsubtype: B12316L,79D,83T,180D
JN69243202BR1013Brazil2002genomic DNAbuffy coatsubtype: B12316L,14S,15L,41T,79D,83L,86P,87Q,96I,98D,116T,120S,148S,154K,180D
JN69243402BR2022Brazil2002genomic DNAbuffy coatsubtype: B12316L,14P,15L,27I,41T,65P,71D,79Q,82M,83F,86Q,88T,89R,90A,92S,94Q,96I,99T,100Q,102K,103V,105S,106R,108I,109T,110I,112L,113K,116S,117Q,119S,121I,124L,125S,126L,127E,128D,143K,148V,169F,178T,187D,203R,208G,212K
JN69243502BR2025Brazil2002genomic DNAbuffy coatsubtype: B12316L,41T,83L,87Q,91V,96I,116T,154K,180D,208G
JN69243602BR2027Brazil2002genomic DNAbuffy coatsubtype: B12316L,27I,83L,96I,148V,178T
JN69243702BR2028Brazil2002genomic DNAbuffy coatsubtype: B12316L,14P,79D,83L,124V,148A,169F,177G,180D,183D,187D,210S,213D,225S
JN69243802BR2029Brazil2002genomic DNAbuffy coatsubtype: B12316L,15L,27I,31N,83L,91V,120H,154K,180D,194S
JN69243902BR2032Brazil2002genomic DNAbuffy coatsubtype: B12316L,15L,27I,31N,83L,91V,120H,154K,180D,194S
JN69244002BR2033Brazil2002genomic DNAbuffy coatsubtype: B12316L,14S,15L,27I,36I,79D,83L,91A,110S,120S,148V,154K
JN69244102BR2036Brazil2002genomic DNAbuffy coatsubtype: B12316L,27I,83M,91A,120S,148V
JN69244202BR2040Brazil2002genomic DNAbuffy coatsubtype: BC recombinant12316L,14P,27I,41T,71D,83L,87Q,91V,96L,116A,120A,124V,128D,129L,148V,154K,169F,178T,188S,203R,208G
JN69244302BR2041Brazil2002genomic DNAbuffy coatsubtype: B12316L,27I,45D,75D,83L,87Q,91V,98D,120S,154K,178T
JN69244402BR2042Brazil2002genomic DNAbuffy coatsubtype: B12316L,41T,83L,87Q,96I,116T,154K,180D,225S
JN69244503BR1020Brazil2003genomic DNAbuffy coatsubtype: B12316L,14P,15L,41T,83L,91V,115X,116A,128D,154K,180D
JN69244603BR1043Brazil2003genomic DNAbuffy coatsubtype: B12316L,83L,120H
JN69244703BR1046Brazil2003genomic DNAbuffy coatsubtype: B12316L,15L,27I,33N,83L,87Q,91V,96L,110N,116Q,120S,148V,178T,208G
JN69244903BR2018Brazil2003genomic DNAbuffy coatsubtype: B12316L,15L,41T,83L,148S,154K,180D,208G,225S
JN69244803BR2019Brazil2003genomic DNAbuffy coatsubtype: B12316L,14P,15L,27I,41T,71D,83L,92P,110N,116Q,120S,124V,148V,154K,169F,177C,178T,183G,187D,208G,210S,225S
JN69245004BR1047Brazil2004genomic DNAbuffy coatsubtype: B12316L,14P,180D,225S
JN69245104BR1049Brazil2004genomic DNAbuffy coatsubtype: B12316L,83I,91V,115V,120S
JN69245204BR1051Brazil2004genomic DNAbuffy coatsubtype: B12316L,14P,27I,31N,44A,83L,86P,87Q,96I,98D,110N,116A,180D,208G
JN69245304BR1054Brazil2004genomic DNAbuffy coatsubtype: B12316L,91V,136M,218S,224G
JN69245404BR1055Brazil2004genomic DNAbuffy coatsubtype: B12316L,14P,75K,76K,81N,82K,83M,96I,97K,101E,116E,117L,120S,132K,137E,154K,171V,180N,184L,185I,214I
JN69245504BR1057Brazil2004genomic DNAbuffy coatsubtype: B12316L,27I,36I,79D,83L,86P,87Q,91V,96I,116T,148V,154K,178T,225A
JN69243304BR1064Brazil2002genomic DNAbuffy coatsubtype: B12316M,15L,27I,68I,79D,83L,116A,129V,148I,180D,225S,230I
JN69245604BR1067Brazil2004genomic DNAbuffy coatsubtype: BF1 recombinant12316L,15L,91V,148V,180D
JN69245704BR1068Brazil2004genomic DNAbuffy coatsubtype: B12316L,27I,83L,116A,148V,178T,208G
JN69245804BR1070Brazil2004genomic DNAbuffy coatsubtype: B12316L,27I,75D,83L,116A,128D,148V,178T
JN69246005BR1077Brazil2005genomic DNAbuffy coatsubtype: B12316L,83L,87Q,91V,96L,120S,124V,128D,136M,154K,179L,194S,208G
JN69246105BR1078Brazil2005genomic DNAbuffy coatsubtype: B12316L,14P,17A,83L,84N,87R,91V,98D,110S,116A,120S,123A,124V,136M,216V
JN69246205BR1079Brazil2005genomic DNAbuffy coatsubtype: B12316L,83L,180D
JN69246305BR1080Brazil2005genomic DNAbuffy coatsubtype: B123114P,27I,83L,86I,87P,96I,98D,116A,128D,148V,178T
JN69246405BR1081Brazil2005genomic DNAbuffy coatsubtype: B12316L,71D,83L,86A,87Q,96I,116T,120G,180D
JN69246505BR1082Brazil2005genomic DNAbuffy coatsubtype: B12316L,14P,27I,41A,83M,87Q,110N,132K,136M,148I,183T,194S,208G
JN69246605BR1084Brazil2005genomic DNAbuffy coatsubtype: B12316L,14P,15L,41T,83L,87Q,110N,154K
JN69246705BR1089Brazil2005genomic DNAbuffy coatsubtype: B12316L,14P,15L,83L,107S,183T,194S,225T,229K,230I
JN69246805BR1092Brazil2005genomic DNAbuffy coatsubtype: B12316L,83L,96I,116A,225S,229K,230I
JN69246905BR1093Brazil2005genomic DNAbuffy coatsubtype: B12316L,18K,79D,81N,83T,143K,180D
JN69247005BR1094Brazil2002genomic DNAbuffy coatsubtype: B12286L,73X,83L,96I,116A,178T,228Q
JN69247105BR1095Brazil2005genomic DNAbuffy coatsubtype: B12316L,83L,91V,96L,116A,124V,154K,183G
JN69247205BR1097Brazil2005genomic DNAbuffy coatsubtype: B12316L,27I,41A,83M,110N,116A,120S,132K,136M,148V,194S,208G
JN69247305BR1101Brazil2005genomic DNAbuffy coatsubtype: B12313I,6L,71D,83L,116N,180D
JN69247405BR1104Brazil2005genomic DNAbuffy coatsubtype: B12316L,14N,83L,110N,148V,154K,177G,200S,205M,208G,209V
JN69247505BR1107Brazil2005genomic DNAbuffy coatsubtype: B123114P,83L,120H,128D,178T
JN69247605BR1110Brazil2005genomic DNAbuffy coatsubtype: B12316L,83L,86A,87Q,91V,96L,120S,124V,128D,136M,154K,179L,194S,208G
JN69247706BR1112Brazil2006genomic DNAbuffy coatsubtype: B12316L,41T,83L,86Q,87Q,96I,116Q,120G,124M,148V,180D,208G,209V,216S
JN69247806BR1114Brazil2006genomic DNAbuffy coatsubtype: BC recombinant12316L,14P,15L,41T,71D,83L,86A,87Q,91V,96I,98D,110N,116T,120S,154K,169F,178T,180D,187D,203R,208G,210S,225S
JN69247906BR1115Brazil2006genomic DNAbuffy coatsubtype: B12316L,14P,15L,83L,96I,110N,116A,120H,148V,178T,216S
JN69248006BR1119Brazil2006genomic DNAbuffy coatsubtype: B12316L,14P,15L,27I,41T,75D,83L,86P,87Q,91V,98D,120S,146C,148V,180D,201F
JN69248106BR1121Brazil2006genomic DNAbuffy coatsubtype: B12316L,15L,27I,41T,83T,91V,116A,148V,178T,201L,208G

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