<!--#set var="title" value="Genbank References: capsid (p24)" --> <!--#if expr="$title" --> <!--#echo var="title" --> <!--#else --> HIV Drug Resistance Database <!--#endif -->
Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Genbank References: capsid (p24)

AuthorsTitleCitationE-value# in
Gb		#PtsARTSourceCloningStudyType
K'Aluoch (2016) High Frequency of Recombinant A and D HIV-1 subtypes in a Population from Uganda (in) ? (Ed.); 12TH CONFERENCE ON RETROVIRUSES AND 1.28e-165 49 177 Mixed Plasma Direct PCR Molecular epidemiology

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AccessionIsolateNameCountryColl DateCloneMolTypeSourceNoteFirstAALastAAMutList
AY80335401-1378MJUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,11I,14P,71D,83L,86P,87Q,92P,96I,110N,116R,120S,154K,169F,171V,183G,187D,207Q,208G,210S,225S
AY80335501-3001NGUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316T,11I,12Y,15L,27I,54M,58V,71D,83L,87Q,92P,96I,111V,115V,116A,120S,123V,131R,148V,169F,178T,180D,203R,208G,225S,230I
AY80335602-1354KPUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12296A,27I,71D,83T,91V,110S,116A,120S,128N,132S,148V,154K,169F,178T,180D,187D,203E,204X,208G,210S,219X
AY80335802-9593OAUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12313I,6A,11T,14S,15L,27I,54M,58I,83L,87Q,91A,98D,120S,148V,180D,208G
AY80335903-2968KMUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316L,14N,15L,27I,41T,83L,91T,120S,148V,154K,180D
AY80336003-3996NMUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,11I,14N,15L,27I,58V,71D,79D,83Q,86P,91V,111P,115V,116A,120G,128D,148V,154K,169F,174S,178X,180D,187D,188X,189I,200S,203R,207A,208G,216X,225S
AY80336103-4509MFUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,15V,27I,54M,58I,71D,83L,87Q,92P,96L,111P,120G,126G,128D,148V,154K,169F,171V,178T,199R,200S,207T,208G,225S
AY80336203-5432NYUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316M,27I,41T,83L,110S,120S,148V,154K,171V,180D,208G,225S
AY80336303-6580SPUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316L,15L,27I,44A,50T,83L,86P,87Q,91V,110N,120S,148V,154K,180D,208G,210S,225S
AY80336403-7253MSUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,11M,15L,26A,27I,30R,31G,53K,54M,58V,71D,83L,91V,111P,116A,128D,148V,153V,154K,169F,171I,180D,187D,200S,207A,208G,225RS
AY80336503-7289KBUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316L,27I,50S,83L,91N,92P,110S,116A,120A,128D,148V,180D,216P,225S
AY80336603-8003KNUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,14S,15V,26A,27I,30R,54M,58I,71D,83L,86I,91N,92P,120S,128D,131R,148V,154K,169F,171A,180D,183G,200S,203R,204G,207S,208G,210S,216P
AY80336703-8170IJUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316L,27I,29D,83L,91V,148V,180D,208G,225S
AY80336803-8500MMUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316L,27I,83L,91N,96I,116A,120G,148V,180D,210X
AY80337003-9073NRUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316P,11I,12Y,15L,27I,54M,58V,71D,83L,87Q,92P,96I,111V,114P,115N,120G,123A,131R,148V,169F,178T,183G,203R,207A,208G,230I
AY80337103-9080KKUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316L,27I,41T,75D,83L,87Q,91V,98D,120S,148V,180D,199R,208G
AY80337203-9098BFUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316L,14P,27I,58A,83L,120S,129M,148V,180D,208G,210S,223~
AY80337303-9140KMUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316V,11I,14P,15L,17A,27I,31N,41P,83L,87Q,91V,120S,123A,148V,183G,203R,208G,210S,225S
AY80337403-9167NSUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316L,27I,33N,54M,58I,83L,91A,120S,128D,148I,159G,180D,210S,214E,225S
AY80337503-9240KRUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12206A,15V,27I,31G,36I,49S,58I,71D,83L,111I,116A,120G,128D,148V,154K,169F,177G,178T,187D,203R,208G,210S,218F,220T
AY80337603-9250NHUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,11I,14P,15L,50S,54M,58I,71D,83L,91A,92P,111P,120G,128D,148V,169F,171V,183G,204S,207T,208G,210S,225S
AY80337703-9256NIUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12315T,6A,11I,14G,15L,26A,27I,30R,31G,50G,54M,58I,71D,83L,87Q,92P,96I,111P,116A,120G,123A,128D,148V,154K,169F,171A,178T,183G,188X,199X,200S,203R,207S,208G,210X,218S,225A
AY80337803-9259MJUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,11I,13S,14P,15F,27I,30R,31G,32L,33R,54M,58I,71D,83L,87P,92Q,96L,98D,108T_T,111P,116R,128D,131X,145X,146Q,148V,154K,169F,170*,171N,172S,173Q,178T,183G,200S,203R,208X,210S,225S
AY80337903-9261OGUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316L,15L,27I,29D,41T,83L,87Q,91V,96L,110N,120S,148V,180D,208G,210S,225S
AY80338003-9264NJUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,11I,14P,15L,31G,41T,50G,54M,58I,71D,83L,86A,87Q,96I,98D,111P,116A,120G,128D,148V,169F,180D,188X,189I,200S,203R,207T,208G,210X,223X
AY80338103-9270NMUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,11I,14S,15L,27I,30R,31G,50S,54M,58I,71D,83L,86T,92P,93Q,111P,128D,148V,154K,169F,178T,183G,200A,203R,207S,208G,225S
AY80338203-9366WGUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,11I,15V,27I,54M,58I,71D,83L,87Q,92P,96L,110P,111P,120G,128D,148V,153V,154K,169F,171V,178T,200S,203R,207A,208G,211F
AY80338303-9383NHUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,11I,15V,27I,30R,31G,50G,58I,71D,83L,87Q,91F,92P,96L,128D,148V,154K,169F,178T,183G,187D,200S,207S,208G,225S
AY80338403-9390KMUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,11X,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,178T,200S,203R,204S,208G
AY80338603-9412NSUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12311L,6F,27I,33N,50S,54S,83L,87Q,91V,116A,120S,128D,148V,180D,205M,208G,217S,225S
AY80338903-9456KMUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,11I,13N,15L,27I,30R,31G,48I,54M,58I,71D,83L,92P,111P,116A,120G,123A,128D,148V,154K,169F,171A,178T,180D,183G,200S,203R,207Q,208G,210S,225S
AY80339003-9538NGUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,11I,12Y,14P,15M,27I,31S,54M,58I,71D,72A,83L,91V,111P,116A,120G,128D,148V,154K,169F,178T,183G,191I,200S,203R,207A,208G
AY80339104-0079BSUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316L,27I,83L,91V,116A,120S,123A,148V,180D,225V,226I
AY80339204-0217BMUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12143M,6T,12Y,15V,54M,58I,71D,83L,87P,96I,98D,111P,116R,120S,128D,142AV,148V,154K,169F,171V,180D,187D,203R,208G,210S,214N
AY80339304-0535KHUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,27I,29D,50T,54M,58I,71D,83L,87Q,92P,96I,116A,120S,124V,131R,148V,154K,169F,178T,180D,187D,203R,208G
AY80339404-0566GTUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,14N,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,142A,148V,154K,169F,171V,178T,181G,183G,191I,198W,200S,207R,208G,225S,230I
AY80339504-0567NRUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,11I,14N,15L,27I,54M,58I,71D,83L,87Q,92P,96L,111P,120S,128D,148V,154K,169F,171V,178T,183G,187D,191I,200S,207R,208G
AY80339604-0572SPUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12312V,6L,14T,15L,27I,31G,33N,41T,50G,83M,86A,87Q,91V,96I,111T,115V,116A,120S,148V,154K,180D,187D,203R,208G,210S,225A
AY80339804-0631KSUgandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316L,11G,14P,15L,27I,29D,31S,41T,83L,96L,110N,115V,116A,120H,135V,148V,154K,180D,225S
AY803399TC023304Ugandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316L,15L,27I,33N,41T,71D,83L,110S,120S,148V,154K,180D,208G,225S
AY803400TC023504Ugandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12312V,6A,12Y,14T,15V,27I,54M,58I,71D,83L,86L,91L,92P,111P,120S,128D,148V,154K,169F,178T,180D,203R,208G,218S,225A
AY803401TC024604Ugandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,15L,54M,58V,75D,86A,87Q,91L,92P,96I,98D,102G,116A,120G,131R,141V,148V,169F,178T,200S,208G
AY803402TC025104Ugandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,13T,14P,15L,16T,27I,48A,54M,58V,71D,83L,91V,92P,111T,120G,128D,131R,148V,154K,169F,178T,183G,200S,207T,208G
AY803403TC025204Ugandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,11I,14S,15L,27I,54M,58I,71D,83L,92P,111P,120S,128D,148V,154K,169F,171V,178T,180D,187D,191I,200S,207T,208G
AY803404TC025504Ugandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316L,15L,27I,83I,91V,110N,116A,120A,148V,180D,201Y,202F,225S
AY803405TC025704Ugandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316L,27I,83I,87Q,91H,92P,116A,128D,136I,148V,180D,194L,225S
AY803406TC026104Ugandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,11I,15L,27I,54M,58I,71D,83L,86A,87Q,92P,96L,111P,120G,128D,148V,154K,169F,171A,178T,183G,200S,203R,207T,208G
AY803407TC026204Ugandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12316A,9A,15L,27I,29D,33N,50H,54M,58V,71D,83A,92P,96I,111M,116T,118I,120G,131R,148V,152E,169F,180D,183T,203R,208G,210S
AY803408TC026604Ugandagenomic RNAplasma; infected adult attending HIVclinic at the Joint Clinical Research Center, Kampala12206L,27I,41T,50G,59I,71D,83L,91V,120S,128D,148V,180D,191I,194S

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