Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Clinical Trial Datasets

ACTG 5288 clinical trial
References
Salata RA, Grinsztejn B, Ritz J, Collier AC, Hogg E, Gross R, Godfrey C, Kumarasamy N, Kanyama C, Mellors JW, Wallis CL, Hughes MD and the ACTG A5288 Study Team. Predictors of virologic outcome among people living with HIV who continue a protease inhibitor-based antiretroviral regimen following virologic failure with no or limited resistance. AIDS Res Ther . 2023 Jan 5;20(1):3.
HIVDB
PR Data in HIVDB
RT Data in HIVDB
IN Data in HIVDB
Sequences
Nucleotide sequences in fasta format
ACTG5288_PR_fasta.txt,   ACTG5288_RT_fasta.txt,   ACTG5288_IN_fasta.txt
Composite alignment (of sequences at baseline)
ACTG5288_PR_composite.html,   ACTG5288_RT_composite.html,   ACTG5288_IN_composite.html
List of sequences with stop codon, ambiguity codon and unusual residues
ACTG5288_PR_QA.txt,   ACTG5288_RT_QA.txt,   ACTG5288_IN_QA.txt

Method: Direct PCR, Dideoxy terminator sequencing
Sample: Plasma
Timing: Multiple timepoints

Browse
Integrated view of ARV, genotypes, RNA and CD4 on 545 patients
Dataset
Downloadable data files

Database

Resources

Team