| Subtype | Group | Protease | RT | Countries |
|---|
| | Main | | 1 | Equatorial Guinea |
| A | Main | 1441 | 1091 | Afghanistan, Africa, Albania, Argentina, Australia, Azerbaijan, Belarus, Belgium, Brazil, Burundi, CAR, Cameroon, Canada, Central African Republic, China, Cote d'Ivoire, Cyprus, DRC, Denmark, Equatorial Guinea, Estonia, Ethiopia, France, Gabon, Germany, Ghana, Greece, India, Israel, Italy, Japan, Kazakhstan, Kenya, Korea, Lebanon, Luxembourg, Madagascar, Mali, Netherlands, Nigeria, Norway, Portugal, Republic Of Georgia, Russia, Rwanda, Saudi Arabia, Senegal, Seychelles, Slovenia, South Africa, Spain, Sudan, Sweden, Switzerland, Tanzania, Thailand, U.K., U.S., Uganda, Ukraine, Uzbekistan, Zambia |
| AD | Main | | 13 | Uganda |
| AG | Main | 8 | 7 | DRC, Lebanon, Nigeria |
| B | Main | 22832 | 23628 | Africa, Albania, Antigua, Argentina, Australia, Austria, Azerbaijan, Barbados, Belarus, Belgium, Bolivia, Brazil, CAR, Cambodia, Cameroon, Canada, Central African Republic, Chile, China, Colombia, Cote d'Ivoire, Cuba, DRC, Denmark, Dominica, Ecuador, Equatorial Guinea, Europe, France, Gabon, Germany, Ghana, Greece, Grenada, Guyana, Honduras, Ireland, Israel, Italy, Japan, Kenya, Korea, Lebanon, Luxembourg, Madagascar, Malaysia, Mali, Mexico, Montserrat, Myanmar, Netherlands, Nigeria, Panama, Peru, Portugal, Puerto Rico, Republic Of Georgia, Russia, Saint Lucia, Saint Vincent, Saudi Arabia, Scotland, Senegal, Seychelles, Slovenia, South Africa, Spain, Sudan, Suriname, Sweden, Switzerland, Taiwan, Thailand, Trinidad, U.K., U.S., Uganda, Ukraine, Unknown, Uruguay, Uzbekistan, Venezuela, Vietnam, Yemen, Yugoslavia |
| C | Main | 2748 | 3237 | Africa, Albania, Argentina, Belgium, Botswana, Brazil, Burundi, CAR, Cameroon, Canada, China, Cote d'Ivoire, Cuba, DRC, Denmark, Dijibouti, Equatorial Guinea, Ethiopia, France, Gabon, Germany, Greece, Honduras, India, Israel, Italy, Japan, Kazakhstan, Kenya, Korea, Lebanon, Luxembourg, Madagascar, Malawi, Malaysia, Mali, Mozambique, Myanmar, Netherlands, Nigeria, Portugal, Republic Of Georgia, Romania, Russia, Rwanda, Saint Lucia, Saudi Arabia, Senegal, Seychelles, Somalia, South Africa, Spain, Sudan, Sweden, Switzerland, Tanzania, U.K., U.S., Uganda, Ukraine, Unknown, Uruguay, Yemen, Yugoslavia, Zambia, Zimbabwe |
| CRF01_AE | Main | 1511 | 2287 | Africa, Albania, Azerbaijan, Belarus, Belgium, Benin, Burundi, CAR, Cambodia, Cameroon, Canada, Central African Republic, China, Cote d'Ivoire, DRC, Denmark, Equatorial Guinea, France, Gabon, Germany, Ghana, Greece, Guinea-Bissau, Honduras, Hong Kong, India, Indonesia, Israel, Italy, Japan, Kazakhstan, Kenya, Korea, Liberia, Luxembourg, Madagascar, Malaysia, Mali, Moldova, Myanmar, Netherlands, Nigeria, Portugal, Republic Of Georgia, Russia, Rwanda, Senegal, Seychelles, Singapore, Slovenia, Spain, Sudan, Sweden, Taiwan, Tanzania, Thailand, U.K., U.S., Uganda, Ukraine, Unknown, Vietnam, Yemen, Yugoslavia |
| CRF02_AG | Main | 2168 | 1649 | Africa, Australia, Belgium, Benin, Brazil, Burkina Faso, Burundi, CAR, Cambodia, Cameroon, Canada, Central African Republic, China, Cote d'Ivoire, Cuba, Cyprus, DRC, Denmark, Dijibouti, Ecuador, Equatorial Guinea, Estonia, Ethiopia, France, Gabon, Germany, Ghana, Greece, Guinea-Bissau, Israel, Italy, Japan, Kazakhstan, Kenya, Korea, Lebanon, Liberia, Libya, Madagascar, Mali, Netherlands, Niger, Nigeria, Portugal, Republic Of Georgia, Russia, Saudi Arabia, Senegal, Seychelles, Slovenia, Spain, Sweden, U.K., U.S., Uganda, Unknown, Uzbekistan, Yugoslavia, Zaire |
| CRF03_AB | Main | 4 | | Netherlands, Russia |
| CRF09_cpx | Main | 4 | 4 | Ghana, Senegal, U.S. |
| CRF12_BF | Main | 2 | 1 | Spain, U.S. |
| D | Main | 868 | 695 | Africa, Albania, Argentina, Australia, Belgium, Brazil, Burundi, CAR, Cameroon, Canada, Chad, China, Cote d'Ivoire, Cuba, DRC, Denmark, Equatorial Guinea, Ethiopia, France, Gabon, Germany, Ghana, Greece, Honduras, Israel, Italy, Japan, Kenya, Korea, Lebanon, Madagascar, Mexico, Netherlands, Nigeria, Peru, Portugal, Romania, Rwanda, Saudi Arabia, Senegal, Seychelles, South Africa, Spain, Sudan, Sweden, Tanzania, Thailand, Trinidad, U.K., U.S., Uganda, Ukraine, Unknown, Vietnam, Yemen, Zaire |
| DG | Main | 1 | 1 | Cameroon |
| F | Main | 918 | 660 | Africa, Argentina, Belgium, Bolivia, Botswana, Brazil, CAR, Cameroon, Canada, Chile, Cuba, DRC, Denmark, Equatorial Guinea, Finland, France, Gabon, Germany, Greece, Honduras, Italy, Japan, Kenya, Luxembourg, Mali, Portugal, Puerto Rico, Republic Of Georgia, Romania, Senegal, Slovenia, Spain, Switzerland, U.K., U.S., Unknown, Uruguay, Venezuela, Yugoslavia |
| G | Main | 943 | 990 | Africa, Angola, Austria, Belgium, Botswana, Burundi, CAR, Cameroon, Canada, Central African Republic, China, Cote d'Ivoire, Cuba, DRC, Denmark, Equatorial Guinea, Finland, France, Gabon, Germany, Ghana, Greece, India, Israel, Italy, Kenya, Liberia, Madagascar, Malaysia, Mali, Netherlands, Niger, Nigeria, Portugal, Saudi Arabia, Senegal, Spain, Sweden, U.K., U.S. |
| H | Main | 29 | 31 | Belgium, CAR, Cameroon, Cuba, DRC, Denmark, Equatorial Guinea, Gabon, Malaysia, Spain, Switzerland, U.K., U.S. |
| J | Main | 146 | 81 | Africa, Belgium, Botswana, CAR, Cameroon, Central African Republic, Cuba, DRC, Denmark, France, Gabon, Germany, Greece, Italy, Kenya, Korea, Mali, Senegal, South Africa, Spain, Sweden, U.K., Yemen |
| K | Main | 153 | 101 | Africa, Argentina, Belgium, Botswana, Brazil, Burundi, CAR, Cameroon, Canada, China, Cote d'Ivoire, Cuba, DRC, Denmark, Estonia, France, Gabon, Germany, Greece, Honduras, Italy, Kenya, Korea, Lebanon, Malaysia, Mali, Netherlands, Nigeria, Portugal, Romania, Russia, Slovenia, South Africa, Spain, Sudan, Switzerland, U.K., U.S., Uganda, Zimbabwe |
| Others | Main | 3 | | Argentina, Australia, Belarus, Belgium, Botswana, Brazil, Cameroon, China, Cote d'Ivoire, Cuba, Cyprus, DRC, Estonia, Gabon, Germany, Ghana, Greece, Kenya, Korea, Mali, Myanmar, Netherlands, Niger, Russia, Rwanda, Saudi Arabia, Senegal, South Africa, Spain, Sweden, Taiwan, Tanzania, U.S., Uzbekistan |
| U | Main | 18 | 20 | Australia, Cameroon, Cyprus, DRC, Gabon, Greece, Mali, Norway, Spain, Zaire |
| N | N | 6 | 5 | Cameroon, U.S. |
| O | O | 99 | 53 | Cameroon, Equatorial Guinea, France, Guinea, Norway, Senegal, Spain, U.S., Zaire |
