Stanford HIVDB http://hivdb.stanford.edu News and updates about Stanford HIVDB Tue, 29 May 2012 21:00:00 PST en-us Extensive Update for NRTI and NNRTI Resistance Scores and all Comments Thu, 29 May 2012 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n36 For a more information on the changes to the program please follow this link. Extensive Update for NRTI and NNRTI Resistance Scores and all Comments Thu, 24 May 2012 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n35 For a more information on the changes to the program please follow this link. Extensive Update for PI Resistance Scores and Comments Wed, 30 Nov 2011 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n34 Most PI resistance scores and comments were updated. For more details follow this link Vast Update for NNRTI Resistance Scores and Comments; scores were added for New Drug - RPV Mon, 10 Oct 2011 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n33 Most NNRTI resistance scores and comments were updated; scores for rilpivirine (RPV) were added and dropped for DLV. For more details follow this link Updated translating rules Wed, 19 Sep 2011 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n32 Updated the rules from Agence Nationale de Recherches sur le SIDA (ANRS V20) Wed, 12 Jul 2011 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n31 Updated our classification into Major and Minor mutations; a few scores and comments were also changed Wed, 29 Mar 2011 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n30 on Mar 29, 2011, we will update our classification into Major and Minor mutations; a few scores and comments will also change Wed, 22 Mar 2011 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n29 Corrected trigger for comment on unusual mutations at integrase position 72 Wed, 20 Jan 2011 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n28 Updated the rules from Agence Nationale de Recherches sur le SIDA (ANRS V19) Wed, 12 Jan 2011 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n27 Updated lists of typical protease and RT mutations Mon, 10 Jan 2011 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n26 Updated criteria for identifying sequences with evidence of Apobec 3G/3F hypermutation Mon, 10 Jan 2011 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n25 Updated the rules from Rega Institute and Agence Nationale de Recherches sur le SIDA (ANRS) Tue, 15 Oct 2009 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n24 Added Protease Resistance Combination Scores Tue, 15 Oct 2009 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n23 Added integrase Resistance Scores Tue, 01 Sep 2009 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n22 Crystallographic Structures of RT, Protease and Integrase Wed, 17 Jun 2009 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n21 HIVdb: Updated handling of sequence QA problems Tue, 06 May 2009 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n20 HIVdb: Adopted new ASI rules compiler Tue, 06 May 2009 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n19 HIVDB User Guide updated Mon, 09 Mar 2009 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n18 Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update Fri, 06 Mar 2009 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n17 HIVdb Comments: minor updates Tue, 10 Feb 2009 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n16 HIVdb Comments updated extensively Wed, 21 Jan 2009 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n15 Most PI and NNRTI Resistance Scores and Comments Updated; integrase added; PI drugs renamed Fri, 04 Nov 2008 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n13 Most PI and NNRTI resistance scores and comments were updated. The report now accepts sequences with integrase and provides a partial report on the integrase portion. PI drugs were renamed to include '/r' - FPV/r, IDV/r, SQV/r, LPV/r, ATV/r, TPV/r, DRV/r - to explicitly indicate ritonavir boosting. For more details follow this link A few DRV Resistance Scores and Comments Updated Fri, 02 May 2008 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n12 A few DRV scores and comments were updated. For more details follow this link Resistance Scores and Comments Updated Fri, 29 Apr 2008 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n11 A few scores and comments were updated. For more details follow this link NNRTI Resistance Scores and Comments Updated: added drug TMC125 Mon, 12 Jul 2007 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n10 Scores and comments for TMC125, a new NNRTI drug, were added. For more details follow this link Three new programs launched: ART-AiDE, eCARE, and CPR Tue, 30 Jan 2007 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n9 Antiretroviral Therapy - Acquisition and Display Engine (ART-AiDE), electronic Clinical Antiretroviral Resistance Estimator (eCARE), and Calibrated Population Resistance (CPR) were launched. For more details follow this link Few PI Resistance Scores Updated Mon, 04 Dec 2006 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n8 A few scores for PI drugs were updated. For more details follow this link Resistance Scores and Comments Updated; drugs fAPV and TMC114 renamed Mon, 21 Nov 2006 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n7 A few scores for PI drugs and comments were updated, especially TPV. fAPV was renamed FPV and TMC114 was renamed DRV. For more details follow this link PI Resistance Scores Updated Mon, 11 Oct 2006 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n6 A few scores for PI drugs were updated, especially TMC 114. For more details follow this link ANRS Resistance Algorithm Updated Mon, 18 Sep 2006 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n5 Scores for ANRS resistance algorithm were updated to 2006 July version. For more details follow this link to their site PI Resistance Scores Updated Mon, 18 Sep 2006 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n4 Scores and comments for PI drugs were updated, especially TMC 114. For more details follow this link PI Resistance Summaries Updated Tue, 22 Aug 2006 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n3 PI resistance summary pages have been updated to reflect recently reported data relevant to atazanavir (ATV), tipranavir (TPV), and darunavir (DRV, TMC114). Most of the changes reflect data from salvage therapy trials. Sequences from TPV and DRV treated persons have not yet been submitted to the database. TPV and DRV drug susceptibility data have also not yet been submitted to the database. Researchers who would like to submit such data should contact us at HIVDB. Positions available Tue, 30 May 2006 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n2 We are seeking two post-doctoral fellows to perform studies of HIV sequence variation, molecular evolution, population genetics, and antiviral drug resistance; to develop software to assist other researchers performing similar analyses; and to further the development of the Stanford HIV Drug Resistance Database (http://hivdb.stanford.edu). Candidates should have degrees in biology, biomedical informatics, or statistics and be motivated to innovate and publish. Candidates will have to become highly knowledgeable about the biological and clinical aspects of HIV drug resistance and how the data representing this knowledge is organized in the Stanford database. Candidates will need to be able to write their own programs for querying the Stanford database and for performing statistical and machine learning analyses of data within the Stanford database as well as of data from additional ongoing collaborations. Ideally, one candidate will have a stronger computer programming background and will contribute to improving the database and its tools and another will have a stronger analytic background with statistical skills and an understanding of molecular evolution and population genetics analyses. Please e-mail your CV, a brief statement, and the names, telephone numbers, and e-mail addresses of three references to HIVDB. Letter Written to the FDA Wed, 25 May 2005 21:00:00 PST http://hivdb.stanford.edu/pages/news/index.html#n1 Show us the data. To better meet their responsibility, the FDA should encourage pharmaceutical companies to release the data supporting the activity of new HIV drugs against drug-resistant viruses.The full text of the letter >>