Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

Clinical Trial Datasets

Tural C, Ruiz L, Holtzer C, Schapiro J, Viciana P, Gonzalez J, Domingo P, Boucher C, Rey-Joly C, Clotet B; Havana Study Group., Clinical utility of HIV-1 genotyping and expert advice: the Havana trial. AIDS. 2002 Jan 25;16(2):209-18.
Nucleotide sequences in fasta format
HAVANA_PR_fasta.txt,   HAVANA_RT_fasta.txt
Composite alignment (of sequences at baseline)
HAVANA_PR_composite.html,   HAVANA_RT_composite.html
List of sequences with stop codon, ambiguity codon and unusual residues

Method: Direct PCR, Dideoxy terminator sequencing
Sample: Plasma
Timing: Real-time

Integrated view of ARV, genotypes, RNA and CD4 on 144 patients
Complete Dataset
The Microsoft Access database HAVANASummary.mdb was created on 144 patients for whom sequences are available and contains tables with treatment, mutations, RNA levels and CD4 counts.

The files contained HAVANASummary.mdb (the description of each file)