Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Novitsky (2002)
Title Human immunodeficiency virus type 1 subtype C molecular phylogeny: consensus sequence for an AIDS vaccine design?
Citation J Virol
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 42
NumPts 42
Subtype C

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
00BW0762 00BW0762 None    E10D, S24N, D25E, V31I, M50I, I72T, I84M, F100Y, L101I, T112I, T124A, T125A, K136Q, K188R, V201I, K211R, Q216R, T218I, K219Q, L234I, V260I, R269K, D278A, S283G  
00BW0768 00BW0768 None    D25E, V31I, M50I, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, V165I, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
00BW0874 00BW0874 None    D25E, V31I, I72V, E96D, F100Y, L101I, T112V, T125A, G134D, K136Q, K188R, V201I, T218I, L234I, S255G, A265V, R269K, D278A, S283G  
00BW1471 00BW1471 None   T97A K14R, S24N, D25E, V31I, I72V, L101I, K111Q, T112I, T124A, T125A, K136Q, E152K, Q177L, T206S, D232E, L234V, D278A, S283G  
00BW1616 00BW1616 None    N18S, S24N, D25E, V31I, M50T, F100Y, L101I, T112I, T124A, T125A, K136Q, V165I, K211R, T218I, L234I, A265V, D278A, S283G  
00BW1686 00BW1686 None    D25E, M50I, I72V, F100Y, L101I, T112I, T124A, T125A, K136Q, I182V, V201I, L234I, D278A, S283G L172H 
00BW1759 00BW1759 None    E10G, E11G, D25E, V31I, M50I, A91T, F100L, L101I, T112I, K136Q, V201I, L234I, A265V, R269K, D278A, S283G H12S 
00BW1773 00BW1773 None    S17N, M50I, I72V, L74I, F100Y, L101I, T112V, T124A, T125A, I135V, K136Q, V201I, T218I, L234I, S255N, A265V, R269K, D270G, D278A, S283G, R284G, D288N  
00BW1783 00BW1783 None    E11D, S24N, D25E, V31I, M50I, L101I, T112I, T124A, K136Q, D167E, V201I, K211R, T218I, R228G, L234I, A265V, R269K, D278A, V281M, S283G  
00BW1795 00BW1795 None    S24N, D25E, V31I, M50I, I73V, I84L, A91T, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, K211R, T218I, S230N, L234I, I251L, D256E, A265V, D278A, S283G  
00BW1811 00BW1811 None    D25E, T112V, T124N, T125A, V126M, K136Q, K188R, V201I, T218I, L234I, A265V, D278A, S283G, R284G, D288N K42E 
00BW1859 00BW1859 None    S24N, D25E, V31I, M50I, I84M, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, K211R, T218I, L234I, D278A  
00BW1880 00BW1880 None    D25E, M50I, I89T, A91E, F100Y, L101I, T112I, S119R, T124A, T125A, K136Q, V201I, K211R, T218I, L234I, N254K, A265V, D278A, S283D  
00BW1921 00BW1921 None    D25E, F100Y, L101I, T112V, T125A, K136Q, V201I, K219N, N222K, L234I, I257V, D278A, S283D  
00BW2036 00BW2036 None    D25E, V31I, M50I, L74I, V77A, L101I, T112V, T124A, T125A, K136Q, V201I, L234I, A265V, R269K, D278A, S283G  
00BW2063 00BW2063 None    E11D, K14R, A21T, D25E, V31I, M50I, I84V, L101I, T112I, T124A, T125A, K136Q, V201I, K211R, T218I, L234I, A265V, R269K, D278A, S283G  
00BW2087 00BW2087 None    E11D, S24N, D25E, V31I, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G  
00BW2127 00BW2127 None    D3N, S24N, D25E, M50T, L101I, T112V, T124A, T125A, K136Q, V201I, Q216R, T218I, K219Q, L234I, R269K, D278A  
00BW2128 00BW2128 None    D25E, V31I, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, N144S, V201I, T218I, L234I, I251L, A265V, R269K, D278A, S283G, R284G, D288N  
00BW2276 00BW2276 None    S17N, V31I, M50I, I72V, I84M, L101I, T112V, K136Q, K188R, V201I, L234I, A265V, R269K, D278A, S283G  
00BW3819 00BW3819 None    E11D, S17N, A23V, D25E, V31I, M50T, V77I, I84M, I89T, L101I, T112V, T124N, T125A, K136Q, V201I, K211R, T218I, K219Q, L234I, S255G, R269K, D278A, D288N  
00BW3842 00BW3842 None    D25E, V31I, F100Y, L101I, T112V, T124A, T125A, K136Q, V165I, V201I, K215N, L234I, A265V, R269K, D278A, S283G  
00BW3871 00BW3871 None    D25E, V31I, M50T, G52R, I72V, F100Y, L101I, T112V, T125V, K136Q, V201I, V225A, L234I, R269K, D278A, S283G  
00BW3876 00BW3876 None    D25E, V31I, L45Q, M50I, F100Y, L101I, T112V, T124S, T125A, K136Q, V201I, K215N, L234I, R269K, D270N, D278A, S283G I135T, E138G 
00BW3886 00BW3886 None    D25E, V31I, M50I, I72T, F100Y, L101I, T112V, T124A, T125A, K136Q, E152G, V201I, K215N, T218I, L234I, N254K, S255G, R269K, D278A, S283G  
00BW3891 00BW3891 None    D25E, M50I, I72V, F100Y, L101I, T112V, T124N, T125A, K136Q, E198G, V201I, T218I, L234I, A265V, S283G  
00BW3970 00BW3970 None    D25E, V31I, F100Y, L101I, T112V, T125A, K188R, V201I, T218I, L234I, K264R, D278A, S283D  
00BW5031 00BW5031 None    A21S, V31I, I60V, L101I, T112A, T124A, T125A, K136N, D167E, V201I, L234I, R269K, K273Q, D278A, S283G, D288N A98V, G190E, V259A 
96BWMO1 96BWMO1 None    K14R, D25E, V31I, M50I, I84M, T112I, T124A, T125A, K136Q, V201I, K211R, T218I, S230N, L234I, D256E, D278A, S283G  
96BWMO3 96BWMO3 None    S17N, D25E, V31I, I72V, I84M, E96D, T112V, T124A, T125A, V126M, K136Q, V201I, L234I, D278A, S283G  
98BWMC12 98BWMC12 None    E10D, D25E, V31I, M50I, I84M, P90T, L101I, T112V, T124G, T125A, K136Q, V165I, V201I, L234V, E246D, D278A, S283G  
98BWMC13 98BWMC13 None    E10D, E11D, K14R, S24N, D25E, V31I, M50I, F100Y, L101I, T112I, T124A, T125A, K136Q, V201I, K211R, T218I, S230N, L234I, D256E, A265V, D278A, S283G  
98BWMC14 98BWMC14 None    D25E, V31I, M50I, I72V, P90S, F100Y, L101I, G106A, T112V, T124A, T125A, K136Q, V150A, V201I, K211Q, T218I, L234I, K244R, N254S, R269K, D278A, S283G  
98BWMO14 98BWMO14 None    M22R, D25E, V31I, L101I, T112V, T124A, T125A, K136Q, V201I, T218L, K219N, N222K, L234I, R269K, D278A, S283G  
98BWMO18 98BWMO18 None    D25E, V31I, I72V, F100Y, L101I, P109S, T124A, T125A, K136Q, V201I, K211R, K215R, T218I, N222I, L234I, A265V, R269K, D278A, S283G L172H 
98BWMO36 98BWMO36 None    S17N, D25E, V31I, F100Y, L101I, T112V, T124A, T125A, K136Q, L172P, V201I, K215R, T218L, L234I, R269K, D278A, S283G, R284G  
98BWMO37 98BWMO37 None    E11D, S24N, D25E, V31I, M50I, L74I, I84V, F100Y, L101I, T112V, T125A, K136Q, Q168R, V201I, R231G, L234I, D278A, S283G  
99BW3932 99BW3932 None    D25E, V31I, M50T, I72V, L101I, T112V, T124A, T125A, K136Q, V201I, K211R, T218I, K219Q, L234I, R269K, D278A Q9R 
99BW4642 99BW4642 None    E10D, D25E, V31I, M50I, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, K211R, T218I, L234I, R269K, D278A, S283D  
99BW4745 99BW4745 None    D25E, M50I, I72V, F100Y, L101I, T112V, T125A, K136Q, V201I, T218I, L234I, A265V, R269K, D278A, S283G S153P 
99BW4754 99BW4754 None    G4E, E10D, D25E, S39C, L45Q, M50I, F100Y, L101I, T125A, K136Q, V201I, T206S, K211R, T218I, L234I, N254K, R269K, S283G  
99BWMC16 99BWMC16 None    D25E, V31I, M50I, I60V, I72V, E96D, F100Y, L101M, T112V, T124A, T125A, I135V, K136Q, M154T, D167E, K188R, V201I, L234I, R269K, D278A, S283G