Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Dowling (2002)
Title Forty-one near full-length HIV-1 sequences from Kenya reveal an epidemic of subtype A and A-containing recombinants.
Citation AIDS
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 41
NumPts 41
Subtype A, D, C, CRF09_cpx

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
KER2003 KER2003 None    S24H, V31I, I72V, T112V, S119P, T122I, T124A, T125A, G193D, V201I, K215R, Y227F, L234I, A265V  
KER2008 KER2008 None    K14R, S17N, L28I, V31I, V32I, I60M, I72V, T112V, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, F139Y, V201I, T206S, S283G  
KER2009 KER2009 None    K14R, A21T, T112V, I113V, T124A, T125A, K136Q, D167E, V201I, I220V, Y227F, D256E, S283G  
KER2010 KER2010 None    D25E, V31I, M50T, F100Y, L101I, T112V, T124A, T125A, K136Q, V201I, K211R, T218I, K219Q, L234I, R269K, D278A, S283G  
KER2012 KER2012 None    K14R, V31I, M50I, I60M, I72V, T112V, I113V, T124A, T125A, V126F, I135V, K136Q, K156R, D167E, V201I, N222K, L234I, M275V, S283G  
KER2017 KER2017 None   T97A E11D, N27G, M50I, I72V, L101I, T112I, I113V, T124A, T125A, K136Q, D167E, V201I, L234I, S283G  
KER2018 KER2018 None  E138K T97A, G163R K14R, W19*, A21T, M22I, S24N, V31I, D41N, G52R, G59E, G70R, G94R, T112V, I113V, T124A, T125A, V126F, W131*, W132*, G134N, I135V, K136S, R166K, D167E, K173R, G193R, V201I, K211R, K219N, N222K, R224Q, R231K, L234I, W235*, W243*, G245S, R269K, S283G G4K, G47K, G106K, G140K, G149R, M178I, G192R, G197E, R228K, G237R, G247K, G272K, G277S 
KER2021 KER2021 None    E11D, V32I, M50I, I72V, L101I, T112I, I113V, T124A, T125A, G134D, K136Q, D167E, V201I, L234I, N254K, S283D, D286N  
KISII5003 KISII5003 None    D3E, K14R, S17N, M50L, I72V, T112V, I113V, S119P, T124A, T125A, V201I, T206S, I208L, K219N, N222K, L234I, D256E, S283G  
KISII5009 KISII5009 None  G118R, G140R  G4R, E10K, W19*, S24H, V31I, S39N, D41N, G52R, G70R, I72V, L101I, T112V, S119P, T124A, W132*, I135V, K136Q, D167E, V201I, K215R, Q216N, L234I, A265V, G272R, S283G G47K, G149R 
KISII5011 KISII5011 None    E13D, S17N, V31I, M50I, I84M, F100Y, L101I, K111R, T112V, T124S, T125A, K136Q, V201I, K219N, N222K, L234I, D256E, V281M, S283G  
KNH1043 KNH1043 None    K14R, L68V, T112V, I113V, T124A, T125A, K136Q, D167E, V201I, T206S, S283G  
KNH1088 KNH1088 None    K14R, R20K, V31I, M50I, I60M, I72V, T112V, I113V, T125A, V126F, I135V, K136Q, D167E, V201I, N222K, L234I, A265V, S283G  
KNH1097 KNH1097 None    K14R, S17N, V31I, V32I, I60M, I72V, V110I, T112V, I113V, T124A, T125A, V126F, G134N, K136Q, D167E, K173R, V201I, K219N, N222K, S283G  
KNH1135 KNH1135 None    K14R, A21T, V31I, I72V, T112V, I113V, T124A, T125A, K136Q, D167E, V201I, L234I, S283G  
KNH1144 KNH1144 None    K14R, V31I, S39C, M50I, L101I, T112V, T124A, T125A, G134D, K136Q, D167E, V201I, Q216H, L234V, S283G  
KNH1199 KNH1199 None    K14R, V31I, I72V, I84M, L101I, T112V, I113V, T124A, T125A, G134N, M154L, D167E, G189R, V201I, K211T, L234I, S255G, A265V, S283G, R284G, D286N  
KNH1207 KNH1207 None    K14R, A21T, V31I, I72V, T112V, I113V, T124A, T125A, V126F, G134N, K136Q, D167E, K173R, V201I, Q216H, T218S, L234I, V281M T206TP 
KNH1209 KNH1209 None    L2I, E11D, K14R, A21T, V31I, I72V, T112V, I113V, T124A, T125A, K136Q, D167E, V201I, L234V, S283G  
KNH1211 KNH1211 None    I5V, K14R, I72V, T112V, I113V, S119P, T122I, T124A, T125A, K136Q, D167E, V201I, T218I, L234I, S283G  
KNH1214 KNH1214 None  G140R  D3N, G4R, D6N, E10K, K14R, W19*, R20K, V31I, G47E, G52R, G59R, G70E, I72V, T112V, I113V, T124A, T125A, W131*, W132*, G134D, K136Q, M154I, D167E, V201I, R224Q, L234I, S283G C40Y, E96K 
KSM4001 KSM4001 None    K14R, S24H, L28I, L45I, K71R, I72V, L101I, T112V, S119P, T122I, T124A, T125P, G193D, V201I, K215R, L234I, A265V, S283G  
KSM4015 KSM4015 None    M50L, I72V, T112V, I113V, T124A, T125V, V201I, Q216H, K219N, L234I, S283G  
KSM4017 KSM4017 None  E138K G163R E10K, K14R, W19*, V32I, D41N, M50I, G70R, I72V, T112V, I113V, T124A, T125A, W131*, W132*, G134D, K136Q, V201I, R224Q, S255N, S283G G4K, G47K, G59K, E96K, G118S, G140K, R228K 
KSM4021 KSM4021 None    K14R, R20K, M50I, I72V, T112V, I113V, T124A, T125A, K136Q, D167E, K173R, V201I, L234V, S283G  
KSM4023 KSM4023 None  G140R  K14R, W19*, V31I, D41N, G47E, G52R, G59E, L68I, I72V, T112V, I113V, T124A, T125A, W131*, W132*, G134D, K136Q, V150I, R166K, D167E, V201I, L234I, G247R, G272R, S283G G4K, G149R 
KSM4024 KSM4024 None   T97A, E157Q K14R, A21T, V31I, D41N, L74I, T112V, I113V, T124A, T125A, V126F, G134N, K136Q, K160Q, D167E, V201I, Q216H, Y227F, L234V, S283G  
KSM4028 KSM4028 None    K14R, A21T, V31I, I72V, T112V, I113V, T124A, T125A, V126F, G134N, I135V, V165I, V201I, N222K, L234V, S283G, R284G  
KSM4030 KSM4030 None    K14R, V31I, I72V, L101I, T112V, I113V, T124G, T125A, V126F, K136Q, D167E, V201I, S283G  
MSA4069 MSA4069 None    K14R, A21T, V32I, S39C, M50I, I72V, L101I, T112V, I113V, T124A, T125A, G134N, K136Q, V201I, D270E, S283G  
MSA4070 MSA4070 None    E11D, K14R, A21T, V31I, I72V, T112V, I113V, T124A, T125A, G134N, K136Q, V201I, L234I, I268L, S283G  
MSA4071 MSA4071 None    K14R, V31I, M50I, I60M, I72V, L74V, E96D, K111Q, T112V, I113V, T124A, T125A, V126F, K136Q, V201I, K211R, T218S, Y227F, L234I, S255N, D278N, S283G  
MSA4072 MSA4072 None    K14R, V31I, I60M, T112V, I113V, T125A, V126F, I135V, K136Q, D167E, V201I, S283G  
MSA4076 MSA4076 None    E11D, K14R, A21T, I72V, T112V, T124A, T125A, K136Q, D167E, V201I, S283G  
MSA4077 MSA4077 None    S17N, V31I, M50I, I72V, I84M, F100Y, L101I, T112V, T124Q, T125A, K136Q, I200M, V201I, I208L, T218I, L234I, R269K, D278A  
MSA4079 MSA4079 None    E11D, K14R, V31I, I60M, L63I, I72V, T97S, T112V, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, D167E, V201I, S283G  
MSA4080 MSA4080 None    K14R, V31I, M50I, I60M, I72V, T112V, I113V, T124A, T125A, K136Q, D167E, V201I, A265V, I268L, S283G  
NKU3004 NKU3004 None    K14R, L45Q, I60M, I72V, P90S, T112I, I113V, T124A, T125A, V126F, G134S, I135V, K136Q, V201I, K211R, L234H, S283G  
NKU3005 NKU3005 None   T97A K14R, A21T, V31I, I72V, T112V, I113V, T124A, T125A, V126F, G134N, I135V, D167E, V201I, K211R, N222K, L234V, I268L, S283G  
NKU3006 NKU3006 None    K14R, S17N, M50L, I72V, T112V, I113V, T124A, T125A, V201I, T218I, L234I, D256E  
NKU3007 NKU3007 None  G140R  G4R, K14R, S17N, V31I, S39C, G47E, M50I, G59R, I72V, I73V, T112V, I113V, T124G, T125A, W132*, K136Q, D167E, V201I, Q216H, R224Q, G272R, V281M, S283G G149R