Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Yahi (2001)
Title Use of drug resistance sequence data for the systematic detection of non-B human immunodeficiency virus type 1 (HIV-1) subtypes: How to create a sentinel site for monitoring the genetic diversity of HIV-1 at a country scale.
Citation J Infect Dis
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 68
NumPts 68
Subtype CRF02_AG, A, C, CRF01_AE, D, K, CRF45_cpx, F, J, CRF09_cpx, CRF12_BF, CRF05_DF, B + F, G

 

Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
NY_M1 M1 None    I15V, M36I, N37S, R41K, L63P, H69K, V75I, V82I, L89M, I93L  
NY_M10 M10 Unknown    L10I, I13V, I15IV, R41K, L63CS, I64V, H69Q  
NY_M11 M11 Unknown    I15V, E35D, M36I, R41K, K45R, R57K, Q61H, L89M, I93L  
NY_M12 M12 Unknown    I13A, K14R, K20I, M36I, N37D, R41K, H69K, L89M  
NY_M13 M13 None    I13AV, K14R, K20I, M36I, N37T, G40GE, R41K, H69K, K70R, L89M  
NY_M14 M14 Unknown  V82A, L90M F53L, L89IMV L10I, V11I, T12E, I13V, K20I, E35D, M36I, R41K, L63P, H69K, A71V  
NY_M15 M15 PI   L89V L10V, I13V, K14R, L19P, K20I, E35N, M36I, N37D, R41K, H69K, T74S  
NY_M16 M16 Unknown    I13V, K14R, G17GE, K20I, M36I, R41K, H69K, K70KR, L89M  
NY_M17 M17 Unknown  I84V G73GS, L89T I13V, K14R, K20I, M36I, R41K, H69K, A71V N88NK 
NY_M18 M18 None    V11I, T12K, I13A, K14R, K20I, M36I, R41K, L63Q, H69K, L89M  
NY_M19 M19 None    I13V, K14R, G17E, K20I, M36I, N37D, R41K, I64M, H69K, K70R, L89M  
NY_M2 M2 None    T12P, I15V, G16E, E35D, L63T, I64M, H69K, L89M, I93L  
NY_M20 M20 Unknown  L90LM L89V I13AV, K14R, K20I, E35K, M36IL, N37D, R41K, K43KR, I62V, L63P, H69K, K70KR  
NY_M21 M21 Unknown    I13V, K20R, E35D, M36I, R41K, R57K, H69K, K70R, L89M  
NY_M22 M22 Unknown  M46MI, I84IV, L90M L10F, K20T, L89IV I13V, L33I, E35D, M36I, R41K, I62IV, L63P, H69K, A71AT, T74S  
NY_M23 M23 None    L10I, I15V, E35D, M36I, N37ND, R41K, L63P, I64M, H69K, L89M, I93L  
NY_M24 M24 Unknown   N83D L10I, I13V, K20R, A22V, E35D, M36I, N37D, R41K, K45R, R57RK, H69K, A71AT, L89I  
NY_M25 M25 None  M46MI, I84IV Q58E, L89MT L10LV, I13V, I15V, K20IR, E35D, M36I, N37D, L63LP, I66IV, H69K, A71AV  
NY_M26 M26 Unknown    I13V, I15V, K20R, E35D, M36I, N37D, R57RK, H69K, L89M  
NY_M27 M27 None  M46I, I54V, I84V G73S, L89T K20I, E35D, M36I, R41K, L63P, H69K, A71V  
NY_M28 M28 NFV   L89T I13V, L19LIV, K20I, L23LV, E35D, M36I, R41K, L63P, H69K, A71X P44PS 
NY_M29 M29 IDV  M46I, I54V, V82F  L10I, I13V, I15V, K20KI, E35D, M36I, R41K, D60E, I62IV, H69Q, L89I  
NY_M3 M3 None    L10M, T12S, I15V, N37S, L63T, H69K, K70Q, L89M, I93L  
NY_M30 M30 Unknown    L10I, I13V, G16GE, E35D, M36I, R41K, H69Q, L89M W6W* 
NY_M31 M31 NFV  L90M K20T I13V, K14R, I15V, E35D, M36I, R41K, K45KR, H69K, L89IM  
NY_M32 M32 None    L10I, I13V, M36I, R41K, L63X, H69Q, L89M  
NY_M33 M33 Unknown  I54V, V82A L33F, Q58E, N83D L10I, I13V, L19I, M36I, R41K, I62V, L89I  
NY_M34 M34 None    T12N, K14R, I15V, M36I, N37D, K55KN, I62V, L63V, I64M, H69K, L89M  
NY_M35 M35 NFV  M46I, L90M  L10I, I13V, K14R, G16E, K20I, E35DN, M36I, I62IV, L63S, C67D, H69R, I72T, L89M, I93IM  
NY_M36 M36 NFV    G16A, E35D, M36I, R41K, H69K, L89M  
NY_M37 M37 Unknown  V82VA  L10I, I13V, K14KR, L19P, K20I, A22AV, L33LIV, E35EG, M36I, R41K, I62IV, L63P, H69KR, K70R, A71AT, T74S, L89I V11M 
NY_M39 M39 NFV  M46I, I54V, V82A  G16E, K20M, M36I, P39Q, R41K, L63R, I64V  
NY_M4 M4 None    T12S, I15V, L19I, M36I, R41K, H69K, L89M, I93L C95CY 
NY_M40 M40 None    E35D, M36I, R41K, R57RK, L63P, I64V, I93L  
NY_M41 M41 None  L90M  L10V, I13V, E35D, M36I, R41K, R57K, I62V, L63P, A71AT, T74TS  
NY_M42 M42 Unknown    T12S, I15V, L19I, M36I, R41K, H69K, L89M, I93L  
NY_M43 M43 None    I15V, E35D, M36I, R41K, R57K, Q61H, I72V, L89M, I93L  
NY_M44 M44 None    K14Q, I15V, K20R, E35D, M36I, R41K, R57K, Q61N, I62V, E65Q, L89M  
NY_M45 M45 Unknown  M46L, I54V, V82A  L10V, I15V, K20R, E35D, M36I, R41K, K55R, R57K, Q61N, T74A, L89M  
NY_M46 M46 Unknown  I84V, L90M L10F, K20T, L89V I13V, L33LI, E35D, M36I, R41K, G49GE, L63P, H69K, A71AT, T74S  
NY_M47 M47 IDV    L10V, I13V, L19P, K20I, M36I, H69K, L89M  
NY_M48 M48 Unknown    L10I, I15V, E35D, M36I, N37D, R41K, L63P, H69K, I93L  
NY_M49 M49 None    L10I, I13V, E35D, M36I, R41K, L63P, H69Q, V77VI, L89M  
NY_M5 M5 None    K14KR, I15V, G16E, M36I, R41K, H69K, L89M, I93L  
NY_M51 M51 Unknown  M46I, I54V, I84V G73S, L89T K20I, E35D, M36I, R41K, L63P, H69K, A71V  
NY_M52 M52 Unknown    I13V, K20I, E35G, M36I, R41K, R57K, H69K, P79S, L89M  
NY_M53 M53 NFV  M46I, I84V L89T I15V, E35G, M36I, N37D, I62V, L63V, I64M, H69K, I93M  
NY_M54 M54 Unknown    I15V, G16A, M36I, N37D, Q61E, L63A, C67E, H69K  
NY_M56 M56 None    K14R, I15V, M36I, N37D, I62V, L63V, I64M, H69K, K70KR, L89M  
NY_M57 M57 None    K14R, G16A, K20KR, M36I, N37D, R57K, D60E, Q61G, L63T, C67E, H69K, K70Q, I72IT, V77I, L89M  
NY_M58 M58 NFV  M46MI, N88S L10LF, K20T T12S, I15V, L19IV, E35ED, M36I, R41K, L63V, H69K, T74S, L89M, I93L  
NY_M59 M59 Unknown  M46MI, I84IV, L90M L89IT V11I, I13V, K20I, E35EG, M36I, R41K, L63P, H69K, A71T  
NY_M6 M6 SQV    T12S, I15V, G16E, L19Q, M36I, N37R, R41N, Q61N, L63A, H69K, V82I, L89M, I93L  
NY_M60 M60 Unknown    L10V, I13V, K14R, M36I, R41K, Q61H, L63M, H69K, L89M  
NY_M61 M61 Unknown    T12A, I15V, M36I, R41K, H69K, L89M, I93L  
NY_M62 M62 SQV    T12S, I15V, G16E, L19Q, M36I, N37R, R41N, Q61N, L63A, H69K, V82I, L89M, I93L  
NY_M63 M63 None    T12P, I15V, G16E, E35D, L63T, I64M, H69K, L89M, I93L  
NY_M64 M64 None    I13V, G17E, K20I, M36I, N37K, R41K, H69K, K70R, L89M  
NY_M65 M65 PI   L89V L10V, I13V, K14R, L19LP, K20I, E35N, M36I, N37D, R41K, H69K, T74S  
NY_M67 M67 None    L10IV, I13V, K14N, G16GE, L19P, K20I, M36I, L63S, C67CY, H69K, L89M  
NY_M68 M68 Unknown    I13V, E35D, M36I, R41K, L63T, H69K, V77I, L89M G94D 
NY_M7 M7 Unknown   K20T I13V, E35D, M36I, R41K, L63S, I64V, H69KQ, K70R, T74S, I93L  
NY_M70 M70 None    L10I, I13V, K14KR, G16A, E35DN, M36I, R41K, C67E, H69K, L89M  
NY_M71 M71 IDV    L10V, I13V, K14R, G16E, E35D, M36I, R41K, R57K, H69K, L89M  
NY_M72 M72 IDV  M46MI, I84V L89T I13V, K20I, E35D, M36I, R41K, L63P, H69K, A71V  
NY_M73 M73 IDV    L10V, I13V, K14R, G16E, K20KI, E35D, M36I, R41K, R57K, H69K, T74TA, L89M  
NY_M8 M8 Unknown  M46I, I54V, V82A  G16E, K20M, M36I, P39Q, R41K, L63R, I64V  
NY_M9 M9 Unknown  L90M  L10V, I13V, E35D, M36I, R41K, R57K, I62V, L63P, T74S  

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