Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.


Author Pasquier (2001)
Title HIV-1 subtyping using phylogenetic analysis of pol gene sequences.
Citation J Virol Methods
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 51
NumPts 51
Subtype B, A, CRF02_AG, G, CRF01_AE, C, J, D, CRF18_cpx, CRF11_cpx, A + G


Clinical RT Isolates

SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
CP_01 CP_01 Unknown Unknown M41L, T215Y  V21I, V35T, V60I, K104N, K122E, I135V, I142V, K173I, Q174K, D177E, T200A, Q207D, R211K  
CP_02 CP_02 Unknown Unknown   V35T, E36D, T39A, E40D, I135V, K173T, Q174K, D177E, T200A, Q207E, R211K  
CP_03 CP_03 Unknown Unknown D67N, K70R, M184MV, T215FY, K219Q  V35T, T39E, K64Y, K122E, D123DG, I135IV, K173S, D177E, I178L, T200A, Q207E, R211K, D218DE, L228LR  
CP_04 CP_04 Unknown Unknown   K43R, K49R, V60I, K104R, D123S, E169A, K173T, Q174N, D177E, T200A, Q207E, R211K  
CP_05 CP_05 Unknown Unknown M41L, K70R  V35T, K49R, V60I, T69N, K122E, D123N, I135T, S162D, K173S, Q174K, D177E, V179I  
CP_06 CP_06 Unknown Unknown D67N, K70R, T215F, K219Q  V35I, T39N, K49R, I50V, V60I, K122E, D123NS, I135T, S162C, D177E, I178L, G196GE, T200TA, Q207A, R211S  
CP_07 CP_07 Unknown Unknown   V35T, T39K, S48T, K122E, D123S, I135T, S162C, K173L, Q174K, D177E, T200E, E203D, Q207A  
CP_08 CP_08 Unknown Unknown M41L, D67N, T69D, M184V, L210W, T215Y E138A I31IL, V35X, T39D, E44D, K122E, D123N, I135T, S162C, K173T, V179I, T200E, I202V, Q207G, R211K  
CP_09 CP_09 Unknown Unknown M184V, T215F V179D V35T, T39L, D123E, A158S, K173T, Q174QK, D177E, T200E, I202V, Q207E, R211K  
CP_10 CP_10 Unknown Unknown D67G, K70R, T215Y, K219E  V35T, T39M, V60I, S68G, I135V, K173T, Q174K, I195L, Q207E, R211K  
CP_11 CP_11 Unknown Unknown   V35T, E40D, V60I, I135V, S162A, K173T, Q174K, D177E, T200A, Q207E P1H, W24WG 
CP_12 CP_12 Unknown Unknown   K20R, V35T, K49R, V60I, K102Q, K104R, K122E, D123S, K173A, D177E, T200A, Q207NS  
CP_13 CP_13 Unknown Unknown   L12I, V21G, V35T, E36D, K49R, V60I, K122E, I135V, A158S, S162A, K173T, D177E, I178M, T200A, Q207K  
CP_14 CP_14 Unknown Unknown   E6K, K11S, V21I, V35T, T39K, V60I, K104R, K173A, P176A, D177S, V179G, M184T, T200A, Q207E, R211K N175V, I178S, I180M, Y181E, Q182R, Y183V, D185H, D186Y 
CP_15 CP_15 Unknown Unknown   V35T, V60I, K122E, D123G, I135T, K173S, V179I, Q197QK, Q207A, R211RK  
CP_16 CP_16 Unknown Unknown   V35T, T39R, D121Y, K122E, T165I, D177E, T200A, Q207E, R211K  
CP_17 CP_17 Unknown Unknown T215TS, K219Q  V35T, T39K, E40D, V60I, K122E, D123S, K173A, D177E, M184L, Q197QH, T200I, Q207A Y127DN, G196GRW, R199R*G, H221HP 
CP_18 CP_18 Unknown Unknown   V35T, K122E, D123E, Q207E, R211K  
CP_19 CP_19 Unknown Unknown  E138Q V35T, E36D, V60I, V118I, I135V, S162A, K173T, Q174R, D177E, I178M, G196E, T200A, Q207E, R211K, F214L  
CP_20 CP_20 Unknown Unknown   V35T, E36D, K122P, I135LV, S162A, K173A, Q174GR, D177E, T200A, Q207E, R211K  
CP_21 CP_21 Unknown Unknown   D123E, I135T, I142T, K173N, Q207E, R211K  
CP_22 CP_22 Unknown Unknown   K20R, I142V, S162A, I178L, V179I, R211K  
CP_23 CP_23 Unknown Unknown   V35T, T39A, E40D, V118I, D123E, T139K, S162A, T165I, K173T, Q174K, D177DE, T200A, Q207E, R211K, F214L  
CP_24 CP_24 Unknown Unknown   K201KR, R211K, I244IV  
CP_25 CP_25 Unknown Unknown D67N, K70R, L210W, T215Y  V60I, K122Q, D177E, I178M, K223RT, P226S, V245K, S251SN R199G 
CP_26 CP_26 Unknown Unknown   V35I, R83K, I135T, I142T, T200A, R211K  
CP_27 CP_27 Unknown Unknown   R83X, D123E, P176PS, D177DN, T200A  
CP_28 CP_28 Unknown Unknown T215C  K49R, R83K, I135V, P176S, I202V  
CP_29 CP_29 Unknown Unknown Q151M  V60I, R83K, I135V, V179I, G196E, Q207N  
CP_30 CP_30 Unknown Unknown   R83K  
CP_31 CP_31 Unknown Unknown K70R, M184V, K219Q F227V E29X, I31L, I37M, R211K, G231V K30ST, C38G 
CP_32 CP_32 Unknown Unknown   I135V, F214L  
CP_33 CP_33 Unknown Unknown M41L, D67N, T69D, L210W, T215D  T27S, V35M, R83K, D123E, G196E, R211K  
CP_34 CP_34 Unknown Unknown   I142T, G196E  
CP_35 CP_35 Unknown Unknown   S68G, D123E, I178L, Q197P, T200E  
CP_36 CP_36 Unknown Unknown   A98S, I142T  
CP_37 CP_37 Unknown Unknown M41L, D67N, T69D, K70R, M184V, T215F, K219Q  D123DE, I135T, D177E, G196E, Q207E, R211K, F214L  
CP_38 CP_38 Unknown Unknown   V35I, K49KR, V60I, R83K, D123E, K166R, D177E  
CP_39 CP_39 Unknown Unknown   R211K, V245M  
CP_40 CP_40 Unknown Unknown D67N, T69D, K70R, M184V, K219Q  V35T, E36A, T39E, E40D, K43R, V60I, D121H, K122E, D123S, I135IT, K166R, K173T, D177E, I178L, T200A, E204K, Q207E, R211K, F214L  
CP_41 CP_41 Unknown Unknown M184V, T215CY  K20KR, V35T, K49R, V60I, D121Y, K122E, D123E, I135IV, A158S, K166I, D177E, I178IM, T200A, Q207E  
CP_42 CP_42 Unknown Unknown T215TA F227FI V35AT, E40ED, K49R, V60I, D121Y, K122E, S162A, D177E, E203EK, E204D, Q207K, R211K, T216TP, L228I I31K, F77V, L187LW, R199W 
CP_43 CP_43 Unknown Unknown   V35T, E40D, K49R, V60I, D121Y, K122E, S162A, D177E, E204D, Q207E, E233G  
CP_44 CP_44 Unknown Unknown M41L, L210W, T215Y  V35T, T39K, K43E, E44A, K122E, D123N, F171Y, K173A, Q174K, D177E, Q207D, R211K  
CP_45 CP_45 Unknown Unknown D67N, T69D  V35T, T39R, K43E, E53D, V60I, D121H, K122E, K173A, Q174K, D177E, Q207E, R211K, K223R H221N 
CP_46 CP_46 Unknown Unknown   E6D, K11T, V35T, T39K, K43E, K122E, D123S, I135T, S162C, K173I, Q174K, D177E, V179I, Q207A, R211S, K238R, V245E, K277R, L282V  
CP_47 CP_47 Unknown Unknown M41ML  V35T, T39L, K102KQ, K122E, D123N, K173A, Q174K, D177E, I178L, Q207E, R211K  
CP_48 CP_48 Unknown Unknown   V35T, K49R, V60I, K122P, I135V, S162C, Q174E, D177E, Q207E, R211K, H221HL, V245Q, P247A  
CP_49 CP_49 Unknown Unknown M41L, L210W, T215Y  V35T, T39K, K43E, V60I, V118I, K122E, K173A, Q174K, D177E, I178M, T200A, Q207E, R211K, L228R  
CP_50 CP_50 Unknown Unknown M41L  V35T, K43R, V60I, K122E, D123S, I135R, E169D, K173R, Q174K, D177E, I178M, T200A, Q207E, R211S, V245Q, E248D, D250E  
CP_51 CP_51 Unknown Unknown M41L, D67N, T69D, K70R, V75VA, T215Y K103N, V106M V35K, T39S, K49R, V60I, K122E, D123N, A158S, E169D, K173R, Q174K, D177E, I178M, T200A, E203D, R211D