Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Silva (2020)
Title HIV-1 prevalence, associated factors, genetic diversity and transmitted drug resistance mutations in a populations of men who have sex with men in Midwestern Brazil.
Citation Direct Genbank Submission
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 78
NumPts 78
Subtype B, F, C, B + F, CRF42_BF

 

Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
Y04 Y04 None    T12S, I13V, I15V, Q18H, L19I, E35D, M36I, R41K, R57K, L63P, K70R  
Y05 Y05 None    T12N, I15V, G16E, N37E, R57K, Q61N, L63H, I72T  
Y06 Y06 None    T12S, I13IV, G16E, K20R, M36I, N37K, R41N, L63S, H69K, I72T, L89M, I93L  
Y110 Y110 None    I15V, G16E, L19V, K20M, E35D, M36I, N37S, R57K, L63T, H69Y, I72T  
Y115 Y115 None    I64IV  
Y116 Y116 None    G17E, L33I, N37S, R41K, A71V, I72T, I93L K20N, T26TA 
Y119 Y119 None    L63D, E65D, H69R, I72T  
Y123 Y123 None    L10V, I13V, G16E, E35D, M36I, P39T, R41K, R57K, D60E, Q61N, H69Y, I72T, L89M  
Y13 Y13 None    G17D, L19I, E35D, N37S, R57K, Q61N, L63S, E65D, I93L  
Y133 Y133 None    R41K, L63P, Q92R  
Y134 Y134 None    G16A, E35D, N37D, K45R, R57RK, L63P, I72IV, V77I, I93L  
Y137 Y137 None    I13V, N37E, L63P, I72T  
Y149 Y149 None    I15V, N37S, R41K, L63T, V77I  
Y174 Y174 None    N37S, R41K, R57K, D60DE, I62V, L63A, C67S, V77I  
Y188 Y188 None   K43KT L10V, T12S, I15V, E35D, M36I, R41K, R57K, Q61DN, L63Q, L89M  
Y19 Y19 None    T12A, M36I, R57K, I62IV, L63P  
Y192 Y192 None  M46ML  L10I, T12K, I15V, D25N, M36I, R41K, I62V, L63S, K70E, A71T, I93L V11D 
Y196 Y196 None    V11I, T12S, I15V, L19I, D60E, L63A, I72V, V77I, I93L  
Y213 Y213 None    G16E, L33I, N37T, P39S, D60E, I62IV, L63PS, I64V  
Y216 Y216 None    L10V, I13V, G16E, E35D, M36I, P39T, R41K, R57K, D60E, Q61N, H69Y, I72T, L89M  
Y22 Y22 None    L10V, I13V, G16E, K20R, E35D, M36I, P39T, R41K, R57K, D60E, Q61N, C67Y, I72T, L89M  
Y221 Y221 None    I15V, N37S, R41K, L63A, V77I  
Y223 Y223 None    L10V, I15V, K20R, E35D, M36V, N37D, R41K, R57K, L63T, E65D, H69Y  
Y224 Y224 None    L10V, I13V, G16E, E35D, M36I, P39T, R41K, R57K, D60E, Q61N, H69Y, I72T, L89M  
Y226 Y226 None    L63S, V77I  
Y234 Y234 None    T12A, I13V, R41K, K43R, L63P, A71V, I72T, V77I, I93L  
Y237 Y237 None    T12P, Q18L, L19T, E35D, K45R, D60E, I62V, L63P, A71T  
Y246 Y246 None    L10I, T12A, L19T, N37C, L63P, I72L, V77I, I93L  
Y256 Y256 None    L10I, T12N, I15V, L19I, M36I, N37T, D60E, I62V, L63P, K70T, I93L  
Y263 Y263 None    I13V, N37S, R41K, I62V, L63A, I72V  
Y275 Y275 None    L63P, H69Q, V77I  
Y278 Y278 None    L10I, I15V, L19I, E35D, M36I, R41K, K45R, I62V, L63V, A71T, I72E, I93L  
Y281 Y281 None    I13V, N37S, R41K, I62V, L63A, I72V  
Y29 Y29 None    L10V, I13V, G16E, E35D, M36I, P39T, R41K, R57K, D60E, Q61N, H69Y, I72T, L89M  
Y295 Y295 None    I13V, N37S, R41K, I62V, I64L, A71V, I72T, V82I, I93L  
Y310 Y310 None    E35D, M36I, R41K, I62V, L63P, V77I, I93L  
Y313 Y313 None    T12N, E35ED, N37NS, R41K, I62V, I64V, A71T, I72V, V77I, P79PS L63*SY 
Y327 Y327 None    L10V, T12TI, I13V, G16E, E35D, M36I, P39A, R41K, R57K, D60E, Q61N, H69Y, I72T, L89M  
Y364 Y364 None    L10V, I13V, G16E, E35D, M36I, P39T, R41K, R57K, D60E, Q61N, L63P, I72T, V77I, L89M  
Y365 Y365 None    I15V, G16A, E35D, M36I, R41K  
Y371 Y371 None    L19V, V77I, I93L  
Y374 Y374 None    L19V, V77I, I93L  
Y38 Y38 None   L33F T12S, I13V, E35D, M36T, N37E, R57K, Q61N, L63S, I64V, C67Y  
Y396 Y396 None    T12A, R41K, I62V, L63A  
Y398 Y398 None    I15V, L19Q, E35D, M36I, R41K, R57K, Q61N, V77I, L89M  
Y400 Y400 None    L10V, T12V, E35D, N37E, R57K, D60E, Q61N, L63C, C67S, I72T  
Y409 Y409 None    R41K, I62V, L63A, I64L, V77I, I93L  
Y41 Y41 None    E35D, N37H, L63P, I64V, I72V, V82VI  
Y42 Y42 None    K14R, I15V, L19I, N37K, R41N, H69K, T74S, L89M, I93L  
Y425 Y425 None   Q58E K14E, L33V, N37C, R41K, L63C, I64V, I72V  
Y426 Y426 None    L24S, D25E, L63T, C67D, H69R, I72T T26A 
Y442 Y442 None    L10V, T12I, I13V, G16E, E35D, M36I, P39T, R41K, R57K, D60E, Q61N, I72T, L89M  
Y443 Y443 None    I15V, G16E, N37S, R41K, L63T, V77I  
Y444 Y444 None    I13V, I62V, L63P, K70E  
Y447 Y447 None    L10V, I13V, G16E, E35D, M36I, P39T, R41K, R57K, D60E, Q61N, H69Y, I72T, L89M  
Y448 Y448 None    L10V, I13V, G16E, E35D, M36I, P39T, R41K, R57K, D60E, Q61N, H69Y, I72T, L89M  
Y45 Y45 None    K14E, I15V, P39S, L63P, E65K  
Y450 Y450 None    L10I, K14R, R41K, I62V, L63P, I64V, A71T, I72A, V77I, P79S, I93L  
Y455 Y455 None    I13V, I15V, N37S, R41K, I62V, L63A, K70R, I72T  
Y457 Y457 None    T12I, I15V, G16E, L19I, E35D, M36I, N37D, R41K, R57K, Q61N, L63T, E65D, I72T, V77I G51R, G86R 
Y458 Y458 None    L10V, I13V, I15V, M36I, I64V  
Y462 Y462 None    T12A, I13V, R41K, K43R, L63P, A71V, I72T, V77I, I93L  
Y468 Y468 None    L10I, I13V, G16E, E35D, M36I, P39T, R41K, K45R, R57K, D60E, Q61N, L63T, I72T, L89M, Q92R  
Y474 Y474 None    K14R, L63APS, V77I  
Y479 Y479 None    T12N, L19I, R41K  
Y482 Y482 None    L10V, T12A, I13V, G16E, E35D, M36I, P39A, R41K, R57K, D60E, Q61N, E65D, I72T, L89M  
Y499 Y499 None    R57K, L63H, I72V, V77I  
Y502 Y502 None    I13V, G16E, M36I, N37K, R41N, K45R, L63P, I64L, H69K, K70R, L89M, I93L  
Y508 Y508 None    T12N, R41K, L63H, I64V, V77I  
Y510 Y510 None  D30N, I50L, V82A L33F, N88D L10I, I13V, L19I, E34N, E35D, M36I, N37E, P39S, K45R, D60E, L63P, A71T, I72V, Q92E  
Y518 Y518 None    I13V, N37C, R41K, I62V, L63A  
Y520 Y520 None    L10V, I13V, G16E, E35D, M36I, P39A, R41K, R57K, D60E, Q61N, I72T, L89M  
Y55 Y55 None    T12TA, I13IV, E35D, M36I, R57K, D60E, I62V, L63P, V77I, I93L  
Y65 Y65 None    E35D, M36I, R41K, R57K, Q61N, I64L, I93L  
Y77 Y77 None    L10V, T12K, I13V, K20R, M36I, R41K, I62V, L63C, I64V  
Y80 Y80 None    L10V, I13V, G16E, E35D, M36I, P39A, R41K, R57K, D60E, Q61N, H69Y, I72T, L89M  
Y83 Y83 None    I13V, K14R, I62V, L63P  
Y96 Y96 None    L10V, E35ED, M36I, R57K, I62V, L63P, I64L, I93L