Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Alves (2019)
Title Estimating HIV-1 Genetic Diversity in Brazil Through Next-Generation Sequencing.
Citation Front Microbiol
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 27
NumPts 27
Subtype B, C, F

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
10HU-FURG 10HU-FURG None    E11D, S24N, D25E, V31I, V32I, M50T, I84L, L101I, T112V, S119P, T124N, K136Q, V201I, K215N, L234I, I251L, R269K, D278A, V281M  
10HU-UFRJ 10HU-UFRJ None    D6E, S17N, P30S, L45R, I72V, L74I, T124A, G163E, V201I, D256E  
12HU-UFRJ 12HU-UFRJ None    E11D, D25E, V31I, K34R, V201I, A265V  
14HI 14HI None    L101I, I182V, V201I, D256E, I268L  
14HU-FURG 14HU-FURG None    E11D, S17T, V37I, I72V, L101I, T112I, S119P, T124A, T125A, I135V, M154I, V165I, V201I, T218I, L234V, D256E, S283G  
16HI 16HI None    V151I, I208L  
16HU-FURG 16HU-FURG None    E11D, S24N, D25E, V31I, M50I, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A  
17HI 17HI None    E10D, L101I, S119R, S123C, K156N, D256E  
17HU-FURG 17HU-FURG None    E11D, E13D, D25E, V31I, M50T, C56S, L101I, T112V, S119P, T122I, T124N, K136Q, V201I, K211R, S230G, L234I, I251L, A265V, R269K, D278A  
18HI 18HI None    E11D, L28I, S39C, M50I, L101V, F181L, K188R, K211R, K215N, K240R, N254K, S255G, A265V, S283G  
18HU-FURG 18HU-FURG None    E11D, S17T, V37I, I72V, L101I, T112I, S119P, T124A, I135V, V165I, G193E, V201I, T206S, L234V, N254H, D256E, S283G  
19HI 19HI None    E11D, S24G, D25E, L45V, M50I, L101I, I135V, V201I, K215N, Q216K, I220L, D256E, I267V  
1HU-FURG 1HU-FURG None    E11D, M50T, L101I, T112I, I113L, T124N, K136Q, G193E, V201I, I220V, L234I, I251L, D288N  
20HI 20HI None    S17N, I72V, T112I, I113V, T122I, T124N, T125A, I220L, A265V, S283G  
20HU-FURG 20HU-FURG None    L45I, M50T, E96D, L101I, T112V, S119R, T124N, K136Q, D167E, K173R, V201I, T218L, I220V, L234I, I251L, A265V  
22HI 22HI None    E11D, V31I, C56S, I72V, L101I, S119P, K136N, V151I, D167E, V201I, D256E  
2HU-UFRJ 2HU-UFRJ None   E157Q S17N, S39N, L101I, K136N, K160T, G163T, G193D, S195T, V201I, T218I, A265V, R269K, D270H  
3HU-FURG 3HU-FURG None    E11D, S24N, D25E, V31I, M50T, L101I, K103R, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V  
3HU-UFRJ 3HU-UFRJ None    E11D, I72V, K111A, S119P, T124S, T125A, V151I, K173R  
4HU-UFRJ 4HU-UFRJ None    I72V, K111T, S119T, T124A, V201I  
6HI 6HI None    S17N, L28I, I84L, L101I, S119T, T124A, T125M, K136Q, V165I, V201I, T206S, K215N, T218I, L234V, D256E, S283G  
6HU-FURG 6HU-FURG None    D25E, V31I, M50T, L101I, T112V, T124N, K136Q, V201I, T218I, L234I, I251L, A265V, R269K, D278A, V281M  
6HU-UFRJ 6HU-UFRJ None    E11D, A21T, I72V, T125A, V126L, I135V, G193R, V201I, T206S, K219N, D253E, D256E  
7HU-FURG 7HU-FURG None    E11D, S24N, D25E, V31I, M50T, L101I, T112V, T124N, G134D, K136Q, L234I, I251L, R269K, D278A, V281M  
7HU-UFRJ 7HU-UFRJ None    I72V, T112V, R187K, K188R  
8HU-FURG 8HU-FURG None    E11D, S24N, D25E, M50I, L101I, T112V, T124N, G134D, K136Q, V201I, N222T, R224Q, L234I, I251L, R269K, D270N, D278A, V281M  
9HU-UFRJ 9HU-UFRJ None    S17N, L28I, P30A, I84L, L101I, S119T, T124A, K136Q, V165I, V201I, T206S, L234I, D256E, S283D, D288G