Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Capoferri (2020)
Title Recombination Analysis of Near Full-Length HIV-1 Sequences and the Identification of a Potential New Circulating Recombinant Form from Rakai, Uganda.
Citation ARHR
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 274
NumPts 274
Subtype D, A, C, C + D, CRF10_CD, B, CRF09_cpx

 
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Page 1   listing Isolate 1 to Isolate 100 from Total 274 Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
A051598 A051598 None   T97A K14R, S24N, I60M, I72V, T124A, T125A, V126M, G134N, K136Q, D167E, V201I, N254K, S255G, S283G  
A094422 A094422 None    S17N, M50L, I72V, T112V, I113V, T124A, T125A, D167E, V201I, T218I, L234I, D256E, A265V  
A095192 A095192 None    K14R, S17N, V31I, S39C, M50I, I72V, L101I, T112V, I113V, T124S, T125A, K136Q, V201I, T206S, Q216H, A265V, S283G  
A115327 A115327 None    D6E, K14R, P30S, V31I, L45Q, I60M, I72V, T112V, I113V, T124A, T125A, V126F, K136N, D167E, V201I, K211T, S230N, S283G, D288N  
A115393 A115393 None    S17N, I72V, T112V, I113V, T124A, T125A, K188R, V201I, T218I, L234I, D256E, A265V, D270N, D286N  
B077943 B077943 None    K14R, S17N, M50I, I84M, L101I, T112V, T124S, T125A, K136Q, V180I, S195C, V201I, T218S, K219N, N222K, L234V, A265V, S283G, D288N  
B091884 B091884 None    S17N, M50L, I72V, T112V, I113V, T124A, T125A, G134D, D167E, K173R, V201I, I208M, T218I, L234I, D256E  
B115336 B115336 None    K14R, V31I, I60M, I72V, T112V, I113V, T124A, T125A, V126F, I135V, K136N, D167E, K173R, G193R, V201I, D256E, A265V  
C049644 C049644 None    K14R, A21T, V31I, I72V, T112V, I113V, T124A, T125A, G134N, K136Q, V201I, K219N, N222K, L234I, D286N  
C078575 C078575 None    L101I, T112I, I113L, T124A, T125A, G134N, K136Q, D167E, V201I, I203M, L234I, I251L, S283G  
C090220 C090220 None    K14R, M50L, I72V, T112V, I113V, T125A, I161L, V201I, K211Q, E212A, T218I, L234I, D256E  
C094814 C094814 None    S17N, M50L, I84M, L101I, T112R, I113V, T124A, T125A, V201I, I203M, Q216H, L234I, D256E  
C115329 C115329 None    S17N, K34R, M50L, I72V, T112V, I113V, T124A, T125A, I135V, V201I, T218I, L234I, D256E  
D026571 D026571 None    S17N, M50L, I72V, T112I, I113V, T122I, T124A, T125A, V201I, T218I, L234I, D256E  
D072128 D072128 None   T97A M50L, I72V, I84M, L101I, K111R, T112V, S119T, T124N, Y194C, V201I, T206S, K211R, L234I, A265V, D270E  
D083914 D083914 None    K14R, S17N, M50L, I72V, V88I, T112V, I113V, T124A, T125A, G134D, K173R, V201I, L234V, D256E  
D094302 D094302 None    E11D, K14R, R20K, V31I, M50L, I72V, T112V, I113V, T125V, V201I, K211R, T218I, L234I, D256E, S283G  
D094742 D094742 None    E10A, E11D, S24N, I60M, I72V, L74M, K111R, T112V, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, D167E, V201I, I208M, Q216H, S283G  
D095501 D095501 None    K14R, V31I, I60M, I72V, T112V, I113V, T124A, T125A, V126F, G134S, I135V, V165I, V201I, K211R, N222K, L234I, I268L, K273Q, D279G, S283G  
D115388 D115388 None    S17N, S39C, M50L, I72V, L74I, K111R, T112V, I113V, K173R, V201I, L234I  
D115419 D115419 None    S17N, M50L, I72V, T112V, I113V, T124A, V201I, L234I, D256E  
E065113 E065113 None    K14R, V31I, I72V, L101I, T112V, I113V, T124A, T125A, G134N, D167E, G193R, V201I, K211N, L234I, A265V, I268V  
E096303 E096303 None    K14R, S24G, I72V, I84M, T112V, I113V, T125A, M154I, K173R, V201L, I204L, A205T, L234I, S283G  
E115339 E115339 None    K14R, V31I, I60M, I72V, T112V, I113V, T124A, T125A, V126F, I135V, K136Q, D167E, V201I, T218I, L234I, D256E  
E115397 E115397 None    S17N, I72V, T112V, I113V, T125A, V126M, K173R, G193D, S195C, V201I, L234I, D256E, I268L, D270H, R284G  
E115410 E115410 None    S17N, M50L, I72V, L101I, T112V, I113V, T124A, T125A, G134D, D167E, V201I, A205S, I208L, T218I, L234I, D256E  
F071159 F071159 None    S17N, K34R, M50V, I72V, T112V, I113V, T124A, T125A, F181L, V201I, T218M, L234I, A265V  
F096778 F096778 None    K14R, A21T, V31I, L101I, T112V, I113V, S119T, T124A, D167E, V201I, K211R, K219N, N222K, L234I, N254K, D256E, I268L  
F096964 F096964 None    S17N, M50L, L74I, I84M, L101I, T112V, I113V, T124A, T125A, M154L, V201I, Y227F, L234V, D256E  
F107751R15 F107751R15 None    S17N, K34R, M50V, I72V, I84M, T112V, T124A, T125A, K136Q, D167E, V201I, K211R, D270E, S283G  
F115330 F115330 None    S17N, I72V, L101I, T112I, I113V, S119P, T124A, T125A, D167E, V201I, K211R, T218I, L234V, A265V, S283G  
F115364 F115364 None    K14R, S17N, A23V, L28I, P30A, M50L, I60V, I72V, L101I, T112V, I113V, T125V, G134D, V201I, I203M, T206S, L234I, D256E  
G074147 G074147 None    S17N, F26Y, M50L, T112V, I113V, T124A, T125A, V201I, S283G  
G096800 G096800 None    S24G, L28I, M50L, A91E, L101I, T112V, I113V, S119R, T125V, V201I, L234I, D256E, A265V  
G102498R15 G102498R15 None    S17N, L28I, P30A, I72V, F100FY, T112V, T124A, T125A, V201I, K211N, L234I  
G111006R15 G111006R15 None   T97TA S17N, S39C, M50I, L63I, I72V, Q95QP, L101I, T112V, I113V, S119P, T124A, T125A, K136N, Q177L, V201I, T206S, Q216R, K219N, L234I  
G115331 G115331 None    S17N, M50L, I72V, L74I, E96D, K111T, T112A, I113V, T124N, T125A, V201I, I217V, L234I, D256E, D270X, D286N  
G115399 G115399 None    S17N, K34R, M50L, I72V, G106A, T112A, I113V, S119T, T124A, T125A, V201I, T206S, K211R, T218I, L234I, K240R, D256E, S283G  
G115404 G115404 None    S17N, M50L, I72V, V110I, T112V, I113V, T124A, T125A, V201I, T218I, L234I, D256E  
H006032 H006032 None    K14R, L28I, S39C, M50I, I72V, L101I, T112V, I113V, T124A, T125A, V201I, T206S, D207E, L234I, N254H, S283G, R284G  
H059862 H059862 None    D6E, S17N, A23V, M50L, I72V, L74I, E96D, T112V, T124A, T125A, V126L, V201I, L234V, S283G  
H073402 H073402 None    E11D, K14R, A21T, A23V, V31I, L45V, M50L, I72V, L101I, T112V, I113V, T124A, T125A, V201I, L234V  
H096194 H096194 None   Q95K S17N, M50L, I72V, E96D, T112V, I113V, T125A, V201I, L234I, D256E, A265V, D279G  
H109402R16 H109402R16 None    S17N, R20K, M50L, I72V, T112V, I113V, T124A, T125A, D167E, V201I, I208IL, L234I  
H115332 H115332 None    S17N, M50L, I72V, T112I, I113V, T124A, T125A, V201I, L234V  
H115366 H115366 None    M50L, T112V, T125V, G193D, S195C, V201I, L234V, A265V, D270H  
H115390 H115390 None    D6N, K14R, S17N, V31I, I60M, I72V, T112M, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, E138D, H171Q, K173R, V201I, T218S, S255G, S283G  
J005965 J005965 None    S17N, M50L, T112V, I113V, T124A, T125A, K173R, V201I, A205S, L234I, I251L, D256E, A265V  
J036927 J036927 None    S17N, I72V, L101I, T112V, T124A, T125A, I135V, F181L, G193D, V201I, L234I, I268L, D270H  
J056339 J056339 None    K14R, S17N, L45I, M50L, I72V, T112V, T124A, T125A, V126M, G134N, K136T, V201I, L234I, D256E, S283G  
J068502 J068502 None    S17N, M50L, I72V, A98G, L101I, T112V, I113V, T124A, T125A, K173R, I203M, L234I, D256E, R284G  
J096658 J096658 None    E10D, L45I, F100Y, L101I, T112V, T124A, T125A, E198D, V201I, I204L, T206S, T218I, Q221R, L234I, A265V, V281M, S283G  
J107356R15 J107356R15 None   T97A K14R, M50L, I72V, T112V, I113V, T124A, T125A, V201I, K211Q, T218I, L234V, N254NK, D256DE, S283G  
J107479R15 J107479R15 None    S17N, M50L, I72V, G106A, T112IV, I113IV, T124A, T125A, I135V, V201I, I203M, D207E, T218TI, L234I, D256E  
J107885R15 J107885R15 None    K14R, S24N, D25E, V31I, I72V, L74I, F100Y, L101I, T112V, T124S, T125A, K136Q, V201I, T218L, L234I, I251L, A265V, D278A, S283G  
J108076R15 J108076R15 None    S17N, V31I, I72V, I84M, F100Y, L101I, K111R, T112V, T124S, T125A, K136Q, M154MI, G163A, V201I, L234I, A265V, R269K, D278A, V281M, S283N  
J108092R15 J108092R15 None    K14R, D25E, V31I, M50I, I72V, L74I, F100Y, L101I, T112V, T124S, T125A, K136Q, V201I, T218I, L234I, A265V, D278A, S283G, R284G  
J108432R15 J108432R15 None    S17N, M50L, I72V, T112V, I113V, T124N, T125A, G193R, V201I, Q221E, N222K, S230N, D256E, A265V, S283G  
J109429R16 J109429R16 None    S17N, K34R, M50L, I72V, T112V, T125V, G163T, V201I, T218M, N254D, S255R  
J109893R15 J109893R15 None    K14R, S24N, V31I, S39N, L63I, L74I, Y99F, L101I, T112V, I113V, T124A, T125A, G134N, K136Q, D167E, V201I, T206S, K219N, N222K, L234I, D256E, S283G  
J109932R15 J109932R15 None   T97A S17N, R20K, M50L, I72V, T112V, T124G, T125A, K173R, V201I, T218I, L234I, V281M, S283G  
J110257R15 J110257R15 None    S17N, V31I, M50L, I72V, T112V, I113V, T124A, V201I, T206S, T218I, L234I, D256E, A265V  
J111008R15 J111008R15 None    K14R, L28LI, S39C, I60M, Q95H, E96D, T124A, T125A, K136Q, D167E, V201I, L234V, I251IL, S283G  
J115367 J115367 None    S17N, I72V, T112V, I113V, T124A, T125A, K156N, V165I, V201I, L234I, D279G, S283G, R284G  
J115422 J115422 None    S17N, I72V, I84M, P90A, L101I, T112V, I113V, T124A, T125A, V165I, V201I, A265V, R269K, S283G  
K004814 K004814 None    V31I, F100Y, L101I, T112V, T124N, T125A, V201I, T206S, E212I, K219N, N222K, L234I, A265V, S283D, D288N  
K023344R15 K023344R15 None    S17N, R20K, S39N, M50L, I72V, I84M, T112V, I113IV, T125A, V201I, L234V, D256E  
K038847R15 K038847R15 None    S17N, M50L, I72V, T112V, I113V, T124A, T125A, V201I, T218I, L234I, D256E, A265V, R269K, D278G  
K038847R16 K038847R16 None    S17N, M50L, I72V, T112V, I113V, T124A, T125A, V201I, T218I, L234I, D256E, A265V, R269K, D278G  
K049065R16 K049065R16 None    S17N, M50L, L101I, T112I, I113V, T124A, T125A, V201I, T218I, L234I, D256E  
K051783R15 K051783R15 None    S17N, L45I, M50L, I72V, A98G, L101I, T112V, I113V, S119P, T124A, T125A, K156N, D167E, V201I, L234I, D256E  
K051830R15 K051830R15 None    S17N, I72V, L101I, T112I, I113V, T124A, T125A, K156N, G193R, V201I, T206S, L234I, N254H, A265V  
K058005R16 K058005R16 None    S17N, M50L, I72V, T112V, I113V, T124N, D167E, V201I, T218I, L234I, D256E  
K061825R16 K061825R16 None    S17N, M50L, I72V, T112V, I113V, T124A, T125A, K127R, V201I, I208M, T210I, T218I, L234V, D256E  
K081952R15 K081952R15 None    K14R, S24N, D25E, V31I, M50I, I72V, F100Y, L101I, T112V, T124S, T125A, K136Q, V201I, K211R, K219N, N222K, L234I, S283G, R284G, D288N  
K084224 K084224 None    S17N, L45Q, M50I, T112V, I113V, T124A, T125A, V201I, T210V, T218I, L234I, D256E, A265V  
K094463 K094463 None    S17N, M50L, L101I, T112V, T124N, T125V, I135V, F181L, V201I, D256E, R284G, D286N  
K103624R15 K103624R15 None   T97A K14R, V31I, S39N, I60M, I72V, T112V, I113V, T124A, T125A, V126F, K127R, K136Q, D167E, V201I, Y227F, D256E, S283G E85K, S147N 
K104483R16 K104483R16 None    S17N, R20K, I72V, A98G, L101I, T112V, I113V, T124A, T125A, G163A, K173R, V201I, I208L, T218I, L234I, S283G  
K107420R15 K107420R15 None    S17N, D25E, V31I, L74I, I84M, F100Y, L101I, G106A, T112V, T124S, G163E, V201I, T206S, K215N, T218I, L234I, A265V, R269K, D278A  
K108750R15 K108750R15 None    S17N, L74I, I84IM, L101I, K111R, T112V, I113V, S119T, T124A, T125A, G163E, H171Q, V201I, K211R, E212I, T218S, Y227F, L234I, D256E, S283G  
K109250R15 K109250R15 None    L45IV, I60M, I72V, T112V, I113V, T124A, T125A, V126F, G134N, K136Q, F139Y, Q177L, V201I, M275V, S283G  
K109878R15 K109878R15 None    K14R, S17N, M50L, I72V, L74I, P90S, T112V, I113V, T124A, T125A, D167E, V201I, T206S, I208L, L234I, D256E  
K110070R15 K110070R15 None    K14R, A21T, V31I, L45Q, I72V, T112V, I113V, T124A, T125A, V126F, G134N, I135V, D167E, K173R, V201I, K211R, T218S, K219N, N222K, L234V, S283G  
K110096R15 K110096R15 None    K14R, S17N, V31I, I72V, T112V, T124N, T125A, G134N, K136Q, D167E, K173R, V201I, L234I, S255N, S283G  
K110193R15 K110193R15 None    S17N, M50L, I72V, T112V, I113V, T124N, T125A, I135V, F181L, V201I, K211R, T218I, L234I, D256E, K264R  
K110193R16 K110193R16 None    S17N, M50L, I72V, T112V, I113V, T124N, T125A, I135V, F181L, V201I, K211R, T218I, L234I, D256E, K264R  
K110258R15 K110258R15 None    S17N, I72V, L101I, T112V, I113V, T124A, T125A, K156R, F181L, V201I, L234V, A265V, D270H  
K110274R15 K110274R15 None    K14R, S17N, V31VI, M50L, I72V, L101I, T112V, I113V, T124A, T125A, D167E, V201I, L234I, A265V  
K110282R15 K110282R15 None    K14R, N27D, V31I, T112V, I113V, T124A, T125A, V126M, V201I, N222K, L234I, A265V, S283G  
K110842R15 K110842R15 None    K14R, S17N, M50L, I72V, F100FY, L101I, T112V, I113V, T124A, T125A, V201I, T206S, T218I, L234I, D256E  
K110876R15 K110876R15 None    S17N, M50L, I72V, T112V, I113V, T124A, T125A, D167E, V201I, T218I, L234I, D256E, A265AV  
K110999R15 K110999R15 None    S17N, M50L, I84L, L101I, T112V, I113V, T124A, T125A, D167E, V201I, A205S, L234I, D256E  
K111588R15 K111588R15 None    E11Q, K14KR, V31I, I72V, I84M, L101I, T112I, I113V, T124A, T125A, G134D, K136Q, N222K, L234I, D256E, S283G  
K114680R16 K114680R16 None   T97A S17N, R20K, M50L, I72V, L101I, T112V, I113V, T124A, T125A, V201I, L234V, D256E  
K114915R16 K114915R16 None    R20K, T112I, I113V, V201I, L234I, D256E, S283G  
K115326 K115326 None    K14R, K34R, I72V, T112V, I113V, T124S, T125A, G134N, G193E, V201I, T206S, T218I, L234I, A265V, R269K, S283G  
K115368 K115368 None    S17N, M50I, T112V, I113V, T124A, T125A, V201I, K211R, T218I, L234I, I251L, D256E, A265V  
K115407 K115407 None   T97A K14R, V31I, Q44H, L101I, I113V, T124A, T125A, V126F, G134N, I135V, K136Q, D167E, V201I, T206S, I208L, T218S, N222Q, L234I, S283G  
K185000 K185000 None    S17N, M50L, I72V, T112V, I113V, T124A, V201I, L234V, D256E  

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