Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Rossi (2013)
Title Sequence variability in p6 gag protein and gag/pol coevolution in human immunodeficiency type 1 subtype F genomes.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 95
NumPts 95
Subtype CRF12_BF, B, CRF29_BF, CRF38_BF, F, C

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
144-P883GAB 144-P883GAB Unknown Unknown D67N, K70R, K219Q  V35T, T39L, S134SC, S162Y, T200A, E203V  
16-O992AFA 16-O992AFA Unknown Unknown M41L, D67N, L74V, L210W, T215Y, K219R V108I, Y181C, G190A T7P, K20R, V35I, T39A, K43A, E44D, V60I, K64R, V75L, K101T, K102Q, V118I, I142V, V179I, G196K, Q197K, E203D, H208Y, R211K  
2-O762ALJ 2-O762ALJ Unknown Unknown   V35T, I135S, D177E  
2031-O905BG 2031-O905BG Unknown Unknown M184V K103N, V108I V35T, T39K, I135T, H208Y, R211K, F214L  
2082-P505RK 2082-P505RK Unknown Unknown L74V, M184V L100I, K103N D123E, D177N, I202V, K219H  
212-O533OOM 212-O533OOM Unknown Unknown M41L, D67N, T215Y, K219N K101E, K103N, Y181C, G190A E6D, E28K, K32E, V35K, T39A, V60I, V118I, K122E, I135V, G196E, E203K, Q207E, L210F L80P 
2139-R140MCM 2139-R140MCM Unknown Unknown  K103N V35M, K101R, S134SC, I178M  
214-R610EAJ 214-R610EAJ Unknown Unknown D67N, K219Q V106I V35T, D177G, I178IM, I195T, R199K, T200E, F214L, L228P, W229L  
223-P73PDP 223-P73PDP Unknown Unknown M184V  V35T, K122E, D123A, I135V, I142T, E194D  
2311-P190BGG 2311-P190BGG Unknown Unknown M184V  E6D, K20R, V35M, I135T, V179I, G196E, Q197K, R211K, F214L  
26-P261BDB 26-P261BDB Unknown Unknown M41L, T215Y, K219R K103N, G190A K43Q, G196E, E203D, H208Y, R211K I180T 
27-R479BEA 27-R479BEA Unknown Unknown M41L, M184V, T215Y  V35R, K43N, S68G, K101R, K122E, D123N, I135T, D177N, R211K, L228P, W229L  
285-P67BCN 285-P67BCN Unknown Unknown M41L, L210W, T215Y  V118I, K122E, I135T, Q207E  
3005-O835MNY 3005-O835MNY Unknown Unknown  V106I V35T, T39K, V60I, K122E, D123S, I135V, D177E, I178L  
3013-R336BMS 3013-R336BMS Unknown Unknown M184V  V35T, K122E, D123N, I135L  
3032-P102BOE 3032-P102BOE Unknown Unknown D67N, K70R, M184V, T215F, K219Q V108I V60I, T69N, D123E, I135T, I178L, D192N, T200E, I202V  
3033-O628OUD 3033-O628OUD Unknown Unknown M41L, L74I, M184V, L210W, T215Y A98G, K103N K20R, T39A, E44D, S68G, I135L, T200A, E203D, R211K  
3085-P450ERC 3085-P450ERC Unknown Unknown D67N, K70R, T215F, K219EQ K103N, Y181C V35T, V60I, I135V, S162Y, V179I, T200TA, R211K  
310-R173ABE 310-R173ABE Unknown Unknown M184V, L210W, T215Y  V21I, S48T, Y56F, K122KE, D123E, I142V  
3104-P423BLM 3104-P423BLM Unknown Unknown M184V K103N V35T, I50X, V60I, K101Q D76G 
3128-R206UTA 3128-R206UTA Unknown Unknown M184V  V35I, R83K, V118I, K122E, T139S, F214L, E224D, L228P, W229L  
3274-P52CJI 3274-P52CJI Unknown Unknown M41L, M184V, T215F K101P, G190A V35T, T39L, S48T, V60I, S68G, K102R, K122E, D123N, I135V, V179I  
3287-R680SAA 3287-R680SAA Unknown Unknown  L100I, K103N V35T, T39L, V60I, K122E, D123DN, R211K, L228P, W229L  
329-R273MAA 329-R273MAA Unknown Unknown L74V, Y115F, Q151M, M184V, K219Q K103N, G190S V21VA, V35I, S48T, V111I, K122E, I135L, V179I, L228P, W229L  
3302-P22LLN 3302-P22LLN Unknown Unknown L74V, Y115F, M184V L100I, K103N, E138A V35R, V60VI, D121N, D123E, I135T, R172K, V179I, T200I, I202V  
342-P232JMG 342-P232JMG Unknown Unknown  K103N, E138A V35I, I135L, T200K  
343-O228LTE 343-O228LTE Unknown Unknown M41L, D67N, L210W, T215Y, K219N K101E, Y181C, G190A K20R, T27S, V35I, K43D, E44A, V118I, K122P, D123E, I178L, V179I, H208Y, R211K  
3467-Cultivo P403VA 3467-Cultivo P403VA Unknown Unknown M184V K101E, E138A, G190S D121H, K122E, I135T, I142T, S162C, T200A, Q207E  
351-P125MJC 351-P125MJC Unknown Unknown M184V K103N, V108I D123E, I142V, D177E, K220N  
3534-O998BNA 3534-O998BNA Unknown Unknown M184V K103N, Y181C, G190A E28K, V35T, K101KN, I135V, E169K, T200I, D218N  
3553-O990BJM 3553-O990BJM Unknown Unknown M41L, M184V, T215Y K103N, Y188L V35T, E44D, V60I, S68G, K102Q, K122E, I135V, I142V, S162A, T200A  
361-R545RMN 361-R545RMN Unknown Unknown D67N, K70R, M184V, K219Q  E29ED, V35T, V60I, K122E, I135V, I142V, S162C, G196R, T200A, E203K  
383-P98VLM 383-P98VLM Unknown Unknown M184V  E6D, K20R, V35T, K49R, V60I, I135V, S162H, E169D, K173AT, Q174K, T200A, Q207E, R211K, F214L  
39-R611AED 39-R611AED Unknown Unknown L74V, M184V L100I, K103N V21I, V35T, T39A, V60I, D123E, I135V, Q174K, N175Y, T200A, Q207E  
3905-O210DCM 3905-O210DCM Unknown Unknown   V35T, I135T, D177N, I195T, F214L P95S 
4021-P938PEM 4021-P938PEM Unknown Unknown M184V  V35T, T39L, K49R, V60I, K122E, I135V, T200A  
4150-R640ADU 4150-R640ADU Unknown Unknown M41L, V75M, F77L, M184V, T215Y A98G, K103S, G190A K20R, V35I, D121H, K122E, I135M, T200A, L210F K102*Q, R211*Q 
4266-P169TLY 4266-P169TLY Unknown Unknown M184V K103S, G190A V35T, T39A, E53D, I178M, V179I, G196E  
4326-R702ADJ 4326-R702ADJ Unknown Unknown M184V K103N K20R, V35Q, S68G, K102HQ, I142T, T165K, E169D, F214L, L228P, W229L  
4572-N36HAP 4572-N36HAP Unknown Unknown   D123E, I135R, I178M, G196A, Q207N, R211K  
4777-P39TTL 4777-P39TTL Unknown Unknown   V35T, V60I, K122E, I135L, I142V, H198P R206T 
4782-O525FEJ 4782-O525FEJ Unknown Unknown   K32R, R211K  
4797-O454VN 4797-O454VN Unknown Unknown K219N  K20R, V60I, D123E, T165I, D177E, R211K, F214L  
4807-O541AMM 4807-O541AMM Unknown Unknown   K20R, K49R, A98S, E169D, F214L  
4866-P516SAM 4866-P516SAM Unknown Unknown M41L, M184V  Q23X, P25X, T27X, E28X, E29X, V35T, T39M, K102Q, K166R, I178M, R211K I202K 
4885-O885AAB 4885-O885AAB Unknown Unknown  V179D V35K, V60I, D123E, I135T, G196E, R211K, F214L  
489-P163COE 489-P163COE Unknown Unknown M184V  W24*, E53D, D123E, I135T, S162F, T200A, R211K  
4904-P77RRJ 4904-P77RRJ Unknown Unknown   K20R, K102Q, K122E, D123N, I135T, T200A  
4908-P35GJE 4908-P35GJE Unknown Unknown D67N, T69D, K70R, M184V, K219Q E138A V35T, E36A, T39D, K43R, S48T, V60I, K122E, D123S, I135T, E169R, K173E, D177K, T200Q, Q207E, R211K, F214L, K220N  
491-R535CAM 491-R535CAM Unknown Unknown  K101E, V108I, Y181C E28K, K32E, V35I, K103R, I135T, Q174R, T200E  
4930-P130PNL 4930-P130PNL Unknown Unknown M41L, T215Y  K43Q, Q85X, V118I, D123E, I135V, I178L, V179I, Q197P, T200A, E203D, R211T  
4933-P191FPD 4933-P191FPD Unknown Unknown   V35T, V60I, R83X, L100F, K103KE, D123E, V179VI, R211K Q85P 
4939-P260DRD 4939-P260DRD Unknown Unknown  K103N E6K, F87L, K122E, I135M, I202V, L210F, R211K  
4987-P536AG 4987-P536AG Unknown Unknown   E6D, V35I, K49R, V60I, R83K, D123E, I135K, T139Q, S162A, E169D, I178M, E194EK, T200E, Q207E  
559-P168FD 559-P168FD Unknown Unknown M184V  V35M, T39A, K43KR, S48T, V118I, D121Y, K122E, S162N, K166Q, I178M, V179I  
581-R468MIL 581-R468MIL Unknown Unknown M184V  V35I, K122E, I135L, D177N  
583-P791MMB 583-P791MMB Unknown Unknown D67N, K70R, K219Q K103N, G190A E28K, K32E, V35T, T39M, E53D, K64R, K102E, I135V, Q207E, R211K  
596-O770BMM 596-O770BMM Unknown Unknown M41L, L74V, M184V, T215Y, K219N L100I, K103N E28A, E44D, A98S, K122E, D123E, I142V, D177N, T200L  
62-P850CJM 62-P850CJM Unknown Unknown M41L, D67N, K70R, T215F, K219E G190E T7A, V35T, T39A, E40X, V60I, T69N, V90I, K104N, D121H, K122E, I135V, S162Y, T200A V179N 
646-P382BDG 646-P382BDG Unknown Unknown D67G, K70R, M184V, T215Y, K219E L100I, K103N K49R, S68G, I135T, I159L, T200E, E203D, D218E, P225L  
K224BML K224BML Unknown Unknown   K20R, A98S, K101KR, K102Q, T165I, E169D  
K764LNA K764LNA Unknown Unknown T215Y K101P, K103S, Y188L K49R, E53D, K122E, I135K, S162A, E169D, I202V, L228P  
L239FFS L239FFS Unknown Unknown D67N, K70R, L74V, M184MV G190*Q V35M, T39A, V60I, V118I, D123E, I135L, D177E, E194D, T200A, E203D, R211K G18GR, L109LR 
L271RJE L271RJE Unknown Unknown M41L, D67N, L210W, T215Y  K20R, V35T, K43Q, V60I, V118I, K122E, D123N, S162H, Q207E, R211K, L228P, W229L  
L479RLD L479RLD Unknown Unknown M41L, D67N, T69D, K70R, L74V, M184V, L210W, T215Y A98G, K101E, V108I, Y181C, G190A, F227L S3C, K20R, V35T, T39A, E44D, V60I, V90I, L109I, K122E, I135V, I142V, S162N, I167V, V179T, V189I, T200A, E203K, Q207E, H208Y, R211N, K219H, L228H, A272P, L283I, I293V, E297R, I329V, R356K, G359S, K385R, T386I, K390R  
L607GCD L607GCD Unknown Unknown M184V  V35R, I135T, I142V, V179I, F214L  
L87DJT L87DJT Unknown Unknown  K103S, G190A V35I, V60I, Q174K, L228P, W229L  
M175RC M175RC Unknown Unknown M41L, M184V, T215F K103N, V108I E28Q, V35T, E36D, T39A, V90I, K122E, D123E, I135T, S162Y, F214L, L228P, W229L P226H 
M384MSL M384MSL Unknown Unknown M184V V106I, Y188L V35M, R83K, D123E, S162C, E169D, T200A, I202IV  
M504MJL M504MJL Unknown Unknown D67N, K70R, T215I, K219E  V35T, K122E L109LP 
M564JDM M564JDM Unknown Unknown M184V K103N K20KR, I135T, T200D, Q207E, R211K  
M6141bisCHR M6141bisCHR Unknown Unknown   V35T, I135V, D177E, R211Q, A272P, K281R, T286A, V292I, E297K, V317A, Q334L, R356RK, A376T, T386I, Q394L  
M677RGC M677RGC Unknown Unknown M184V  V21I, V35T, V60I, D123E, I178L  
M79VVN M79VVN Unknown Unknown V75M, M184V K103N V35I, V90I, D123E, I135L, I142L, S162H, N175H, I178IM, G196K, T200I  
M860AMS M860AMS Unknown Unknown M41L, T215D  E28R, K32E, V35T, T39L, K122E, D123E, I135V, I142V, P176Q, T200A  
M884PAA M884PAA Unknown Unknown  Y188L V35I, E53D, D123E, D177E, R211K, F214I  
M909PCA M909PCA Unknown Unknown  K103N D123E, D177E, R211E  
M953QAL M953QAL Unknown Unknown   E6D, V35E, D177E, T200A, I202V, E204K, Q207E  
M976RLA M976RLA Unknown Unknown   A98S, D123E, T200V  
N11LNA N11LNA Unknown Unknown M41L, M184V, T215D A98G, Y181C V35T, E40EG, I135V, I142V, A158S, S163T, D177E, V179I, T200A, I202V, E204G  
N155MAA N155MAA Unknown Unknown M184V  V35I, S48T, I135L, Q174R, F214L  
N178LNE N178LNE Unknown Unknown M184V K103N K32R, I202V, Q207E  
N204SBD N204SBD Unknown Unknown M41L, T215Y K101H, G190A V35M, T39A, E79D, D123E, I142T, D177AE, V179I, H208Y, R211K  
N208GRG N208GRG Unknown Unknown K70R, M184V, K219Q  K11R, P14T, K20R, T39A, K43E, K49R, W88C, V118I, I135T, T200A, R211K, F214L  
N230RA N230RA Unknown Unknown   V8I, V35P, K49R, V60I, Q197P  
N231GLJ N231GLJ Unknown Unknown   V35T, T39A, D123E, Q207E, R211K  
N309BAL N309BAL Unknown Unknown   A98S  
N312VAA N312VAA Unknown Unknown M184V A98G, K103N K20R, K32I, V35T, T39K, S105SA, K122E, I135L, E203D, F214L  
N32LND N32LND Unknown Unknown M184V V108I, Y181C V35I, K122E, I135L, A158T, E203K, Q207E, F214L Y146YC 
N332RYL N332RYL Unknown Unknown M41L, L74V, M184V, L210W, T215Y  V35T, T39R, K43E, E44D, S68G, V118I, S162N, E194P, Q207K, R211K  
N338PNN N338PNN Unknown Unknown K70R, M184V, T215Y, K219E  K32R, L34F, V35T, M41I, E42G, S68G, K122E, E169K, D177N, I178M, T200E T139P 
N359CCA N359CCA Unknown Unknown M184V G190S L34F, V35I, K49R, R83K, K122E, D123N, I135L, K173R, Q174QR  
N809CAE N809CAE Unknown Unknown A62V, M184V A98G, K101E, K103N, E138G, G190A V35T, K49R, I50V, D121H, K122E, D177G L205P 
N947DNG N947DNG Unknown Unknown M41L, D67N, T69D, K70R, L74I, V75T, M184V, T215F, K219Q K101H, V108I, Y181C, G190A K20R, V35M, T39S, K122E, D123N, I135L, Q174R, D177E, V179I, T200A, Q207E, D218E  
O50GCD O50GCD Unknown Unknown M184V  V35R, I50X, I135T, I142V, V179I, F214L