Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Pess˘a (2014)
Title Deep sequencing of HIV-1 near full-length proviral genomes identifies high rates of BF1 recombinants including two novel circulating recombinant forms (CRF) 70_BF1 and a disseminating 71_BF1 among blood donors in Pernambuco, Brazil.
Citation PLoS ONE
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 24
NumPts 24
Subtype F, B

 

Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
10BR_PE002 10BR_PE002 None    I15V, E35D, M36I, R41K, R57K, Q61N, G68E, I72V, V82I, L89M  
10BR_PE004 10BR_PE004 None  M46MI  I15V, L19I, E34EK, E35D, M36I, G40X, R41K, G48GR, Q61N, I72T, V77I, L89M W42W*, G51GR, G52GS, G68GR 
10BR_PE008 10BR_PE008 None    T12K, E35D, M36I, N37D, R41K, R57K, D60E, Q61N, I62M, L89M  
10BR_PE009 10BR_PE009 None    L10V, K14R, I15V, E21D, E35D, M36I, R41K, R57K, Q61N, E65D, L89M  
10BR_PE016 10BR_PE016 None    L10V, K14R, I15V, G16E, E35D, M36I, R41K, R57K, Q61N, L63A, E65D, L89M  
10BR_PE025 10BR_PE025 None    L10V, I15V, K20R, E35D, M36I, R41K, R57K, Q61N, L89M  
10BR_PE026_1 10BR_PE026_1 None    I15V, E35D, M36L, P39S, R41K, R57K, Q61N, L63M, L89M  
10BR_PE032_1 10BR_PE032_1 None    L10V, I13V, I15V, M36I, R41K, Q61N, L89M  
10BR_PE053 10BR_PE053 None    T4S, N37S, L63A, V77I  
10BR_PE059 10BR_PE059 None    L10I, I15V, E35D, M36I, R57K, Q61N, C67D, I72T, L89M  
10BR_PE064 10BR_PE064 None    T4S, I15V, E35D, M36I, R41K, R57K, Q61N, E65D, L89M  
10BR_PE066 10BR_PE066 None    L10V, T12M, I13V, I15V, E35D, M36I, R41K, R57K, D60E, Q61D, I62V, L63A, E65D, L89M, I93L  
10BR_PE071 10BR_PE071 None    I15V, E35D, M36I, R41K, R57K, Q61S  
10BR_PE073 10BR_PE073 None    T12E, K14R, E35D, M36I, R41K, Q61N, L63A, I64M  
10BR_PE084 10BR_PE084 None    L10V, I15V, E35D, M36I, R41K, R57K, Q61N, H69Q, L89M  
10BR_PE086 10BR_PE086 None    L10LM, I15V, K20R, E35D, M36I, R41K, R57K, Q61N, I62V, L63S, L89M, I93L  
10BR_PE087 10BR_PE087 None    I15V, K20R, E35D, M36I, P39A, R41K, Q61N, L63Q, L89M  
10BR_PE088 10BR_PE088 None    T12K, I15V, E35D, M36I, R41K, R57K, Q61D, E65D, I72T, V82I, L89M  
10BR_PE090 10BR_PE090 None    L10M, I13V, K14R, E35D, M36I, R41K, R57K, Q61D, H69Q, L89M  
10BR_PE092 10BR_PE092 None    I15V, E35D, M36I, R41K, D60E, Q61N, I62V, I64M, L89M  
10BR_PE094 10BR_PE094 None    I15V, K20R, E35D, M36I, P39A, R41K, Q61N, L63Q, L89M  
10BR_PE104 10BR_PE104 None    I13V, I15V, K20R, M36I, N37E, P39S, R57K, Q61N, L63T, E65D, I72T  
10BR_PE107 10BR_PE107 None    I15V, E35D, M36I, R41K, R57K, Q61S, I62V, H69Y, L89M  
10BR_PE109 10BR_PE109 None  D30DN, M46MI  T12TI, I13IV, I15V, L19LQ, K20M, E35D, M36I, P39Q, R41RK, G48GE, R57K, D60E, Q61DN, L63P, E65EK, L89M G49EK