Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Pess˘a (2014)
Title Deep sequencing of HIV-1 near full-length proviral genomes identifies high rates of BF1 recombinants including two novel circulating recombinant forms (CRF) 70_BF1 and a disseminating 71_BF1 among blood donors in Pernambuco, Brazil.
Citation PLoS ONE
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 24
NumPts 24
Subtype F, B, D

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
10BR_PE002 10BR_PE002 None  E138EK G163EK E11D, I72V, G106X, G134GE, E152K, M154I, E157K, R166K, D167N, E170K, F181FL, V201I, K211R, T218I, R224Q, L234V, D256E, V260I, I268L, D270H, S283G E96EK, R107RK, G118GS, W131W*, W132W*, G149K, V165IM, M178I 
10BR_PE004 10BR_PE004 None    D6E, S39N, T124N, T125A, V165I, F181L, V201I, L234I, D256E, I257L, S283G  
10BR_PE008 10BR_PE008 None    S17N, I72V, L101I, T124A, T218I, D229E, L234V, D256E, A265V, S283G  
10BR_PE009 10BR_PE009 None    E11D, S17T, I72V, L101I, K111A, S119T, T124A, V165I, V201I, L234I, D256E, I257L, I268L, S283G  
10BR_PE016 10BR_PE016 None    S17N, T112I, T124A, T125A, K136N, V165I, V201I, T206S, Y227F, L234V, D256E, S283G  
10BR_PE025 10BR_PE025 None    E11D, K14R, S17T, V37I, M50I, I72V, L101I, T122I, T124A, V165I, T206S, K215N, I220L, Y227F, L234V, D256E, S283G N222D 
10BR_PE026_2 10BR_PE026_2 None    V201I, L234V, D256E, R269RK, G272GE, S283G W235W*, W243W*, C280CY 
10BR_PE032_1 10BR_PE032_1 None    D6E, V32I, L45V, V165I, F181L, V201I, L234V, D256E, S283G  
10BR_PE053 10BR_PE053 None    K14R, S17N, A23V, V31I, T124A, T125A, V126L, I135V, D167E, V201I, T206S, D256E, D270E, S283G  
10BR_PE059 10BR_PE059 None    E11D, V31I, V37I, L101I, I113V, S119T, T124A, T125A, K136Q, V201I, A205S, K211R, L234V, A265V, S283G  
10BR_PE064 10BR_PE064 None    E11D, A21T, I72V, L101I, K111T, T124N, T125A, V165I, A205T, I208M, Y227F, L234V, D256E, S283G  
10BR_PE066 10BR_PE066 None    S17N, L101I, T124A, I135V, V165I, V201I, L234V, D256E, S283G  
10BR_PE071 10BR_PE071 None    E10D, S17N, V32I, S39Q, M50I, L101I, K103R, T122I, T124A, V165I, V201I, L234V, D256E  
10BR_PE073 10BR_PE073 None    D6N, K7E, K14R, V31I, I72V, T112I, V201I, I220L, L234V, W243*, D256E, K266R, I268V, S283G, D286N, E287K E246K 
10BR_PE084 10BR_PE084 None    E11D, S17T, R20K, K111T, T124A, V165I, Y227F, L234V, D256E, S283G  
10BR_PE086 10BR_PE086 None    E11D, S17N, I72V, V77I, I84M, A91G, L101I, S119P, T122I, T124A, T125A, K136Q, V201I, K211R, Q221R, L234V, D256E, S283G  
10BR_PE087 10BR_PE087 None    D6E, S39N, V165I, V201I, L234I, D256E, I268L, S283G  
10BR_PE088 10BR_PE088 None    E11D, S24N, L28I, I72V, L101I, T124A, V151I, V165I, V201I, K215N, Y227F, L234V, D256E, S283G  
10BR_PE090 10BR_PE090 None    K14R, S17T, M50I, I72V, L74M, V77A, I89M, L101I, T112I, T124A, V165I, V201I, A205S, I220L, Y227F, L234V, D256E, S283G  
10BR_PE092 10BR_PE092 None   G163R G4R, S17N, R20K, M22I, D25N, D41N, G47R, E48K, G70R, I72V, G82R, I84L, E92K, L101I, K103R, T124A, W131X, W132X, A133X, G140X, N155X, V165I, R166K, E170X, K173X, E198D, V201I, I208L, R224Q, L234I, E246G, G247GR, S255X, D256E, R269RK, S283G V31A, G52K, G134A, I135E, K136M, G149R, M178I, K186G, G197E, K211G, R228RK, W235W*, W243W*, C280CY 
10BR_PE094 10BR_PE094 None    D6E, S24G, S39N, V165I, V201I, L234I, D256E, I268L, S283G  
10BR_PE104 10BR_PE104 None    A21S, A33T, S39C, L45Q, I72V, L101I, T112I, S119P, T122V, T125V  
10BR_PE107 10BR_PE107 None    E11D, S17T, I72V, V77A, I84L, Y99F, S119P, T124A, T125A, K136Q, V201I, T218I, L234V, D256E, A265V, S283G K14W, M22T 
10BR_PE109 10BR_PE109 None   G163R D6N, E13K, K14R, S17T, D25N, P30S, E35K, D41N, G47E, E48K, M50I, I60V, D64N, E69K, I72V, A80S, L101I, I135V, E152K, M154I, E157K, V165I, E170K, V201I, T206S, Q216H, L234V, D256E, D279DG, S283G G52K, G70K