Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Budayanti (2018)
Title Molecular Antiretroviral Resistance Markers of Human Immunodeficiency Virus-1 of CRF01_AE Subtype in Bali, Indonesia.
Citation Curr HIV Res
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 42
NumPts 42
Subtype CRF01_AE, A, B

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
H01TF H01TF AZT, 3TC NVP  E138G E6D, V35T, T39K, K43E, S68G, K122E, D123S, A158X, I159X, K166R, K173I, Q174K, Q207A, R211S, K238S, V245E, A272P, V276I, T286A, E291D, V292I, I293V, E312T, I326V, I329V, G335D  
HNT02N HNT02N None None   E6D, V8I, K11T, K20R, V35T, T39K, K43E, S68N, T69N, G112A, K122E, D123N, K173I, Q174K, D177E, I178V, V179I, I202V, Q207A, R211S, V245E, A272P, T286A, E291D, V292I, I293V, E312T, I326V, I329V, G335E  
HNT04TF HNT04TF AZT, 3TC NVP F116Y, Q151M, M184V Y181C, H221Y, K238T E6D, V8I, K11T, V35T, T39K, K43E, V111I, K122E, D123N, I135V, T165I, K173V, Q174K, D177E, I178M, V179I, I202V, Q207A, R211S, F214L, D218E, V245E, A272P, K275R, E291D, V292I, I293V, E312T, I329V, G335E  
HNT05N HNT05N None None   E6D, V35T, T39K, K43E, T69N, K122E, D123N, K173I, Q174K, D177E, I178M, V179I, T200A, I202V, Q207D, R211K, V245E, A272P, T286A, V292I, I293V, K311Q, E312T, I326V, I329V, G335E  
HNT06TF HNT06TF AZT, 3TC NVP M184V, T215F Y181V E6D, K11T, V35T, T39K, K122E, D123N, K173S, Q174K, D177E, V179I, I202V, Q207A, R211S, V245E, V292I, I293V, E312T, I326V, I329V, G335D K43L 
HNT08N HNT08N None None  V106I E6D, K11T, V35T, T39E, S68G, K102R, K122E, D123N, T165I, K173A, Q174K, D177E, Q207A, R211S, V245E, V292I, I293V, E312T, I329V, Q332P, G335D  
HNT09TF HNT09TF AZT, 3TC, D4T NVP A62V, V75T, Q151M, M184V V179E, Y181C, H221Y P4S, I5V, K11T, K20R, A33V, V35T, T39K, K43A, S68G, W88C, V111I, D123S, T165I, K173I, Q174K, D177E, I178L, Q182H, Q207A, R211S, F214L, K238R, V245E, A288T, I293V, E312T, I329V, G335D  
HNT10TF HNT10TF AZT, 3TC NVP M41L, L74I, M184V, L210W, T215Y K103N E6D, K11T, V35T, T39K, K43E, S68G, V90I, K102R, V118I, K122E, D123N, K173I, Q174K, D177E, I178M, T200I, Q207A, R211N, K238R, V245E, A272P, T286A, E291D, V292I, I293V, E298D, E312T, I326V, I329V, G335D  
HR03TF HR03TF AZT, 3TC NVP M184V, T215F Y181C, H221Y E6D, V8I, V35T, T39K, K43E, T139R, S162C, K173I, Q174K, D177E, I178M, V179I, I202V, Q207A, R211S, V245E, A272P, V276I, T286A, E291D, V292I, I293V, E312T, I329V, G335D  
HR06N HR06N None None   E6D, V8I, K11T, V35T, T39K, E40D, K43A, V111I, K122E, D123N, K173I, Q174K, D177E, I178M, V179I, I202V, Q207N, V245E, A272P, K281R, T286A, E291D, V292I, I293V, E312T, I329V, G335E  
HR08TF HR08TF AZT, 3TC NVP D67N, K70R, M184V, T215F, K219Q A98G, K103N, E138Q, K238N E6D, K11T, E28A, V35T, T39E, R83K, V90I, I94L, K122E, D123S, K173I, Q174K, D177E, I178M, T200A, Q207A, R211S, V245K, A272P, K275R, T286A, A288T, E291D, V292I, I293V, E312T, D324E, I326V, I329V, K331N, Q332K, G335D  
HR14TF HR14TF AZT, 3TC NVP M41L, M184V, T215Y A98G, Y181C E6D, T7P, V35T, T39E, D121H, K122E, I135V, K173L, Q174K, D177E, I178V, Q207A, R211S, K238R, V245E, A272P, E291D, V292I, I293V, E312T, I329V, Q330P, Q334T  
HR15TF HR15TF AZT, 3TC NVP M41L, D67N, K70R, M184V, T215F, K219Q A98G, V106A, G190A V35T, T39A, V60I, T69N, V111I, K122E, D123N, I135T, K173S, Q174K, D177E, V179I, T200A, I202V, Q207N, R211K, F214L, V245Q, E248D, T286A, V292I, I293V, E312N, G335D  
HR21TF HR21TF AZT, 3TC NVP D67N, K70R, M184V, T215F, K219Q K101E, E138A, G190S E6D, K11A, V35T, T39E, K46Q, K122E, D123S, I135V, K173I, Q174K, T200A, Q207A, R211S, V245E, T286A, E291D, V292I, I293V, E312T, I329V, G335D  
HT01N HT01N None None   E6D, V8I, K11T, V35T, T39K, K43E, V111I, K122E, D123N, K173I, Q174K, D177E, I178M, V179I, I202V, Q207D, R211K, V245E, A272P, T286A, E291D, V292I, I293V, E312T, I326V, I329V, G333E  
HT02TF HT02TF AZT, 3TC NVP, EFV D67G, K70R, M184V, T215F, K219E V108I, G190A, M230L E6D, V8I, K11T, V35T, T39K, K43E, T69N, W88C, K122E, D123N, K173I, Q174K, D177E, I178M, V179I, I202V, Q207A, R211S, V245E, A272P, T286A, E291D, V292I, I293V, E312T, I326V, I329V  
HT03N HT03N None None   E6D, K11T, V35T, T39K, S68G, K122E, D123S, R172K, K173L, Q174K, D177E, I178M, Q207A, R211S, V245E, A272P, T286A, V292I, I293V, E312T, I329V, G335D  
HT07N HT07N None None   E6S, V8I, K11T, V35T, T39K, K43E, K122E, D123N, S162C, K173I, Q174K, V179I, I202V, Q207A, R211S, V245E, A272P, T286A, A288T, E291D, V292I, I293V, E312T, I329V, G335E  
HT10N HT10N None None   E6D, V35T, T39E, K122E, D123S, I135V, S162C, R172K, K173I, Q174K, D177E, Q207A, R211T, K238R, V245E, A272P, T286A, V292I, I293V, E312T, I326V, I329V, G335D  
HT11N HT11N None None  V179D E6D, K11T, V35T, T39E, V111I, K122E, D123N, I142V, K173I, Q174K, D177E, Q207A, R211S, V245E, A272Q, T286A, E291D, V292I, I293V, E298D, K311S, E312T, I326V, I329V, G335D  
HT12TF HT12TF AZT, 3TC NVP M41L, D67N, M184V, T215Y Y181C E6D, V8I, K11T, V35T, T39K, K43E, E44D, R83K, K122E, D123N, S162C, K173I, Q174K, D177E, V179I, I202V, Q207E, R211K, H221C, V245E, A272P, T286A, A288T, V292I, I293V, E312T, I326V, I329V, G335D  
HT13TF HT13TF AZT, 3TC NVP M41L, D67N, K70R, M184V, L210W, T215Y, K219E A98G, Y181C E6D, K11T, V35T, T39K, K43E, E44A, V60I, K122E, D123N, I135T, K173I, Q174K, D177E, V179I, I202V, E203Q, Q207D, L228H, V245E, A272P, T286A, E291D, V292I, I293V, N306D, E312T, I326V, I329V, G335E  
HT16TF HT16TF AZT, 3TC NVP, EFV M41L, D67N, T69D, K70R, L74I, M184V, T215F, K219Q K101E, G190A, P225H E6D, K11T, K20R, E28K, K32I, V35T, T39K, K43E, K122E, D123N, I167V, K173T, Q174K, D177E, I178M, V179I, Q197E, T200K, K201R, Q207A, R211K, V245K, A272P, T286A, E291D, V292I, I293V, E312T, I326V, I329V, G335E F61L 
HT17N HT17N None None   E6D, K11T, V35T, T39K, K43E, S68G, K122E, D123N, I135T, K166R, K173I, Q174K, D177E, I178M, Q207A, R211S, K238R, V245E, A272P, K275R, V276I, T286A, E291D, V292I, I293V, E312T, I326V, I329V, G335D  
HT28N HT28N None None   E6D, V35T, T39E, E40D, R78K, K122E, S162C, K173L, Q174K, D177E, I178V, Q207A, R211S, K238R, V245E, E248K, A272P, V276I, T286A, E291D, V292I, I293V, E312T, I326V, I329V, G335D  
HT31TF HT31TF AZT, 3TC, D4T NVP, EFV M41L, D67N, V75M, M184V, L210W, T215Y Y188L S3C, E6D, K11T, V35T, T39K, K43E, E44A, V111I, S117A, K122E, D123S, P140T, S162N, K173I, Q174K, D177E, V189I, Q207A, H208Y, R211E, W212C, K238R, V245E, T286A, E291D, V292I, I293V, E312T, I326V, I329V, G335D  
HT36N HT36N None None   E6D, V8I, K11T, K32KI, V35T, T39K, K43E, K122E, D123N, I135R, K173RT, Q174K, D177E, I178M, V179I, I202V, Q207N, V245E, A272P, T286A, E291D, V292I, I293V, E312T, I326V, I329V, G335E  
HT38N HT38N None None   E6D, V35T, T39E, D121H, K122E, I135T, S162C, K173S, Q174K, D177E, I178M, Q207A, R211S, V245E, A272P, T286A, E291D, V292I, I293V, E312T, I326V, I329V, G335D  
HT39N HT39N None None  V179D E6D, K11T, K20R, V35T, T39K, K43E, T69S, V111I, V118I, K122E, D123N, I135T, K173L, Q174K, D177E, Q207A, R211S, F214L, K238R, V245K, A272P, E291D, V292I, I293V, L310I, E312T, D324E, I329V, G335D D110I 
HT40N HT40N None None  V179E I5V, E6D, K11T, V35T, T39K, K43A, K122E, D123S, K173I, Q174K, D177E, Q207A, R211S, F214L, K238R, V245E, A272P, I293V, E312T, I329V, G335D  
HT41GT HT41GT Unknown Unknown   E6D, K20R, V35L, D86E, V111I, K122E, I135V, S162Y, L210S, R211K, V245M, A272P, I293V, K311Q, I326V  
HT42N HT42N None None   E6D, V8I, K11T, K20R, V35T, T39K, K43E, K122E, D123N, K173M, Q174K, D177E, I178V, V179I, I202V, Q207A, R211S, V245E, A272P, T286A, E291D, V292I, I293V, E312T, I326V, I329V, G335E P170K 
HT43N HT43N None None   V35T, T39E, D121H, K122E, S162C, K173S, Q174K, D177E, I178V, Q207A, R211S, V245E, A272P, E291D, V292I, I293V, E312T, I326V, I329V, G335D  
HT44N HT44N None None  V179E E6D, K11T, V35T, T39K, K43A, W88C, V111I, K122E, D123N, K173T, Q174K, D177E, E203D, Q207A, R211S, F214L, K238R, V245E, I293V, E312T, I326V, I329V, G335D  
HT48N HT48N None None   E6D, V8I, K11T, V35T, T39K, K43E, V111I, K122E, D123N, K166R, K173I, Q174K, D177E, V179I, I202V, Q207E, F214L, V245E, A272P, T286A, E291D, V292I, I293V, E312T, I326V, I329V, G335E  
HT49N HT49N None None   P4S, E6D, K11S, V35T, T39K, K43E, A98S, K122E, D123N, A158S, K173I, Q174K, D177E, Q207A, R211S, K238R, V245E, T286A, E291D, V292I, I293V, E312T, I326V, I329V, G335D  
HT50TF HT50TF AZT, 3TC NVP M41L, D67N, V75M, M184V, L210W, T215Y Y188L S3C, E6D, K11T, V21I, V35T, K122E, D123N, K173I, Q174K, D177E, Q207A, R211S, K238R, V245E, I293V, E312T, D324E, I326V, I329V, G335D  
HT53TF HT53TF AZT, 3TC NVP M41L, M184V, L210W, T215F K103N E6D, V10I, K11T, Q23H, E28K, V35T, T39K, K43E, I94L, K101Q, K122E, D123N, K173I, Q174K, D177E, I178M, T200K, I202V, Q207E, R211K, V245K, A272P, T286A, A288T, E291D, V292I, I293V, E312T, I326V, G335D  
HT55N HT55N None None   E6D, V8I, K11A, V35T, T39K, K43E, K122E, D123N, K173T, Q174K, D177E, Q207A, R211S, V245E, T286A, E291D, V292I, I293V, E312T, I326V, I329V, G335D  
HT57N HT57N None None  E138G E6D, K11T, K20R, V35T, T39N, K122E, D123N, T165I, K173N, Q174K, D177E, I202V, Q207D, R211S, V245E, V292I, I293V, E312T, I326V, I329V, G335D  
HT59TF HT59TF AZT, 3TC NVP M41L, D67N, V75M, M184V, L210W, T215Y K101E, G190A E28K, V35T, T39K, K43E, E44D, V60I, V118I, K122E, D123S, K173I, Q174K, N175Y, D177E, G196E, Q207A, R211N, K238R, V245E, E291D, V292I, I293V, P294T, E312T, I326V, I329V, G335D  
HT62N HT62N None None   S3I, E6D, V8I, K11T, V35T, T39K, K43E, G112A, K122E, D123N, K173I, Q174K, D177E, I178M, V179I, I202V, Q207D, V245E, A272P, T286A, V292I, I293V, E312T, I329V, G335E