Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Bansode (2011)
Title Drug resistance mutations in drug-naive HIV type 1 subtype C-infected individuals from rural Malawi.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 56
NumPts 56
Subtype C

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
52613 52613 Unknown Unknown   V35K, E36A, T39E, S48T, K122E, K173I, Q174K, D177N, T200A, Q207E, R211K, V245Q  
53208 53208 Unknown Unknown   V35T, E36A, T39E, S48T, K104R, K122E, D123G, K173A, Q174K, Q197P, T200A, Q207E, R211K, V245Q  
53213 53213 Unknown Unknown   V35T, E36A, T39E, S48T, E53D, K122E, D123S, K173A, D177E, T200A, Q207E, R211RK, P243T, V245Q K30T 
53218 53218 Unknown Unknown   V35T, E36A, T39E, S48T, W88C, K122E, K173A, D177E, G196V, T200A, Q207E, R211K, V245E  
53231 53231 Unknown Unknown   V35T, T39R, S48T, K122E, D123S, I135T, S162A, T200A, Q207E, F214L  
53259 53259 Unknown Unknown   V35T, T39E, S48T, E53D, A98S, D121DY, K122E, K173A, Q174K, D177E, I178L, T200A, Q207A, R211K, V245Q  
53274 53274 Unknown Unknown   V35T, E36A, T39E, S48T, K122E, D123G, A158S, K173E, Q174R, D177E, T200A, Q207E, V245Q  
53277 53277 Unknown Unknown   V35T, E36A, T39D, S48T, V60I, K104KN, D121H, K122E, K173A, D177E, G196Q, T200A, Q207E, V245Q, P247T  
53278 53278 Unknown Unknown   V35T, E36A, T39E, S48T, K104R, K122E, D123G, K173A, D177N, Q197P, T200A, Q207E, R211K, V245Q  
53288 53288 Unknown Unknown   K20R, V35T, E36A, T39E, S48T, K122E, D123X, I135IR, K173AT, Q174K, Q197QP, T200A, Q207E, R211K, F214L, V245Q  
53306 53306 Unknown Unknown   V35T, E36A, T39E, S48T, K104R, K122E, D123G, K173A, Q197P, T200A, Q207E, R211K, V245Q G152R 
53354 53354 Unknown Unknown   V35T, E36A, T39E, S48T, K122E, D123S, K173A, D177E, T200A, Q207E, R211K, V245Q  
53394 53394 Unknown Unknown   V35T, E36V, T39E, S48T, V118I, K122Q, D123N, K173A, D177E, T200A, Q207E, R211K, F214L, V245M  
53431 53431 Unknown Unknown   K20R, V35T, E36A, T39E, S48T, K122E, D123S, I135R, K173T, D177N, T200A, Q207D, R211K, F214L, V245L  
53436 53436 Unknown Unknown   V35T, E36V, T39E, S48T, V118I, K122Q, D123N, K173A, D177E, T200A, Q207E, R211K, F214L, V245M  
53441 53441 Unknown Unknown   V35T, T39E, S48T, K122E, D123DE, K173A, Q174K, D177E, T200A, Q207E, R211K, V245Q  
53443 53443 Unknown Unknown   V35T, T39K, E53D, D121H, K122E, P176S, D177H, T200A, I202V, Q207E, R211K, F214L  
53467 53467 Unknown Unknown   V35T, E36A, T39D, S48T, K122E, D123N, I135R, K173T, T200A, Q207E, V245Q  
53471 53471 Unknown Unknown   V35T, E36A, T39D, E40D, K43R, S48T, K122E, D123N, K173T, Q174K, T200E, Q207E, R211K, F214L  
53477 53477 Unknown Unknown   M16V, E28A, V35T, T39E, S48T, E53D, K122E, D123S, S162D, K166R, E169K, K173E, D177E, T200A, Q207E, R211K, V245Q  
53565 53565 Unknown Unknown   V35T, E36A, T39E, E40D, S48T, K122E, D123G, S162C, K166R, K173E, D177E, T200A, Q207E, R211K, V245Q  
53627 53627 Unknown Unknown   K22R, V35T, E36A, T39E, S48T, W88C, K122E, K173A, D177E, G196V, T200A, Q207E, V245Q G231E 
53645 53645 Unknown Unknown   V35T, E36A, T39E, S48T, K104R, K122E, D123G, K173A, Q197P, T200A, Q207E, R211K, V245Q  
53733 53733 Unknown Unknown   K20R, V35T, E36A, T39E, S48T, V60I, V118I, K122E, D123N, I135R, T139S, I142T, K173T, Q174K, T200A, Q207E, R211K, F214L, V245Q  
53790 53790 Unknown Unknown   V35T, E36A, T39E, E42G, S48T, K122E, D123G, K173A, Q174K, Q197P, T200A, Q207E, R211K, V245Q W71V, R72E 
53843 53843 Unknown Unknown   K22R, V35T, E36A, T39E, S48T, K122E, D123DG, K173A, Q174QK, D177E, G196GV, T200A, Q207E, R211K, V245Q  
53883 53883 Unknown Unknown   V35T, E36EA, T39E, E40D, K43R, S48T, K122E, D123N, K173T, Q174K, D177DE, T200AE, Q207E, R211K, F214L  
53900 53900 Unknown Unknown   K20R, V35T, E36A, T39E, S48T, V60I, V118I, K122E, D123N, I135R, T139S, I142T, K173T, Q174K, T200A, Q207E, R211K, F214L, V245Q  
53968 53968 Unknown Unknown   K20R, V35T, E36A, T39E, S48T, V60I, K122E, D123S, I135R, K173T, Q174K, D177N, T200A, Q207N, R211K, F214L, V245Q  
53974 53974 Unknown Unknown   V35T, E36A, T39E, S48T, K122E, D123G, K173I, Q174K, D177G, T200A, Q207E, R211T, V245Q  
53977 53977 Unknown Unknown   V35T, E36A, T39E, S48T, S162C, K173A, Q174K, D177E, I178L, T200A, Q207E, R211K, P243T, V245Q  
54017 54017 Unknown Unknown   V35T, E36A, T39E, S48T, K104R, K122E, D123G, T139S, K173A, Q197P, T200A, Q207E, R211K, V245T Q23T, I244Y 
54023 54023 Unknown Unknown  E138A V35T, T39E, S48T, K101Q, K122E, D123G, K173E, Q174K, D177E, I178M, T200A, E204K, Q207E, V245Q  
54094 54094 Unknown Unknown   E28A, V35T, T39E, S48T, E53D, K122E, D123S, S162D, K166R, E169K, K173E, D177E, T200A, Q207E, R211K, V245K  
54101 54101 Unknown Unknown   V35T, T39E, S48T, E53D, A98S, K122E, K166R, K173A, Q174K, D177E, I178L, T200A, Q207A, R211K, V245Q  
54117 54117 Unknown Unknown   V35T, E36A, T39E, E44K, S48T, G51R, E53K, W71*, R78K, W88*, G93R, G99R, G112E, K122E, D123G, G155R, K173A, Q174K, D177E, G190R, G196R, T200A, Q207E, R211K, W212*, W239*, V245Q G141K, G231R 
54138 54138 Unknown Unknown   V35T, E36A, T39E, S48T, K122E, D123G, K166R, K173A, Q174K, D177E, T200A, Q207E, R211K, V245Q  
54208 54208 Unknown Unknown   V35T, E36A, T39E, S48T, K104R, K122E, D123G, K173A, Q197P, T200A, Q207E, R211K, V245Q  
54286 54286 Unknown Unknown   V35T, E36A, T39E, S48T, K122E, D123S, Q145C, K173A, D177G, T200A, Q207G, R211K, V245Q  
54320 54320 Unknown Unknown   V35T, E36A, T39E, S48T, K104R, K122E, D123G, K173A, Q197P, T200A, Q207E, R211K, V245Q  
54322 54322 Unknown Unknown   V35T, E36A, T39E, S48T, K122E, D123G, K166KR, K173A, Q174K, D177E, I178IM, T200A, Q207E, R211RK, V245Q  
54345 54345 Unknown Unknown   V35T, E36A, T39E, S48T, K122E, D123G, K173A, D177E, I178M, T200A, Q207E, R211RK, V245Q  
54347 54347 Unknown Unknown   V35T, T39E, S48T, E53D, A98S, K122E, K166KR, K173A, Q174K, D177E, T200A, Q207A, R211K, V245Q  
54348 54348 Unknown Unknown   V35T, E36A, T39E, S48T, K122E, D123G, A158S, K173E, Q174R, D177E, T200A, Q207E, V245Q  
54357 54357 Unknown Unknown  A98G T27S, V35T, E36A, T39E, S48T, K122E, D123G, S162C, K173A, Q174K, D177E, T200A, Q207K, R211M, V245K  
54407 54407 Unknown Unknown   G15E, V35T, E36A, T39E, S48T, R72K, K122E, D123G, E169K, K173A, D177E, T200A, E204K, Q207E, V245Q  
54434 54434 Unknown Unknown   V35T, E36A, T39E, S48T, V60I, V75VL, V106VL, K122E, D123S, K173T, T200A, Q207E, R211K, V245L K66KN 
54482 54482 Unknown Unknown   T27S, V35T, E36A, T39E, S48T, K122E, D123S, I142T, A158S, K173A, D177E, G196E, T200A, I202V, E204K, Q207D, V245Q  
54535 54535 Unknown Unknown   V35T, E36A, T39DE, S48T, K104R, K122E, D123G, S162SC, K173AT, D177E, T200A, Q207E, R211K, V245Q  
54538 54538 Unknown Unknown   V35T, T39E, S48T, E53D, A98S, K122E, D123N, I142V, K166R, K173A, Q174K, D177E, I178L, T200A, Q207A, R211K, V245Q  
54574 54574 Unknown Unknown   V35T, T39E, S48T, E53D, A98S, K122E, K166R, K173A, Q174K, D177E, T200A, Q207A, R211K, V245Q  
54579 54579 Unknown Unknown   V35T, E36A, T39E, S48T, V60I, A98AS, K122E, D123G, K173AT, Q174K, T200A, Q207E, V245Q  
54618 54618 Unknown Unknown   V35T, E36A, T39E, S48T, K122E, D123G, A158S, K173E, Q174R, D177E, T200A, Q207E, V245Q  
54702 54702 Unknown Unknown   K22R, V35T, E36A, T39E, S48T, W88C, K122E, K173A, D177E, G196V, T200A, Q207E, V245E  
54781 54781 Unknown Unknown   V35T, T39E, E42K, S48T, K122E, K173A, Q174K, D177E, Q197H, T200A, Q207E, R211K, V245Q Q145*C 
54784 54784 Unknown Unknown   V35T, E36A, T39E, S48T, K122E, D123S, I135IT, T139X, S162SG, F171L, K173X, Q174QK, D177DE, I178IL, T200A, Q207E, V245L