Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Weber (2019)
Title Prospective Evaluation of the Vela Diagnostics Next-Generation Sequencing Platform for HIV-1 Genotypic Resistance Testing.
Citation J Mol Diagn
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 49
NumPts 48
Subtype B, C

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
CA101617 CA444320 EVG, DTG 252   K7R, E11D, I72V, T112I, T124N, T125A, V126L, M154L, V201I, T206S, T218S  
CA119581 CA442015 Unknown    S17N, M22L, V31I, I208L  
CA119673 CA444331 DTG 146   S17SN, V31I, M50MI, I60M, I72IT, K111T, V151VI, K156N, K173KR, Q177QHL, V201I, I220V, S230N, N254G N184NT 
CA119710 CA444334 RAL, DTG 236   S17N, L101I, T124A, K215N, T218S, I220L  
CA14237 CA441892 Unknown    I72V, T112A, I113V, T125A, R187K, T206S, D278DN, C280S, S283G, D288DN  
CA14265 CA444977 Unknown    D6E, E10D, V31I, I72V, T112A, T124A, T125A, K215N, S230N  
CA14553 CA441898 INI    E11D, A21T, S119P, T122I, T125TA, G163E  
CA175228 CA445037 EVG 141   E11D, V31I, V37I, M50I, L101I, G163E, V201I, K211R, T218S, D253E, D256E  
CA175491 CA444341 Unknown, DTG 29   K7KR, M22ML, D25E, V31I, M50MI, I72V, F100Y, L101I, T112V, T125A, K173R, V201I, K215N, T218L, L234I, D278A, S283G, R284G  
CA175562 CA442063 DTG 105   E11D, A23V, L28I, V37I, S39SN, A91E, L101I, T112A, S119R, T124TA, G193E, T218S, D232E, D253H  
CA17678 CA444265 RAL 295 Y143HR  S17SN, V31VIM, L74M, L101I, I113IL, S119P, T122TI, D256E A91KT 
CA197692 CA445049 EVG 65 T66I, E92Q  S17N, V31I, I72IV, T124A, V165I, K211R, S283G  
CA197715 CA444352 Unknown    L101I, T112I, S119P, I208L, K211Q, E212I, D256E, V260I, A265V, S283G  
CA197758 CA445050 Unknown    K111T, I113V, S119T, T125V, V201I, K211R  
CA197771 CA442107 Unknown, EVG 56 E92EQ E157EQ E11ED, V37I, M50MI, L74LI, L101I, T112TA, S119P, T122TI, T124A, T125A, I135V, V165I, G193E, Y227F, D229DE, S230N, N254Q, S255G, D256E, D288N  
CA220136 CA444355 DTG 26   E11D, L28I, V31I, V37I, S39C, L101LV, T125A, V126L, V201I, T206S, S230N, D253E, M275V, R284G  
CA220304 CA444365 Unknown    M50MI, V201I, K215N, T218S, I220L  
CA220362 CA442742 Unknown    S17N, L28I, P30A, L101I, K111T, S119SG, T122I, T125A, K156N, V165I, K188R, V201I, Q216R, K219N, N222K, V281VM  
CA220363 CA442743 Unknown    S17N, D41N, I72V, L101I, K111Q, S119P, T122I, T124A, Y227F, D253Y, D256E, A265V, S283G  
  CA445064 Unknown    S17N, D41DN, L45LI, I72V, L101LI, K111KQ, S119PR, T122I, T124A, T125TA, Y227F, D253HY, D256E, A265V, S283G  
CA220364 CA442746 Unknown  G140C, Q148R D232DN K14KR, S17N, V31I, G59GE, I72V, T124A, T125A, E138D, K156KN, T206S, V259VI  
CA220366 CA442753 Unknown    E11D, V37I, L101I, S119P, T122I, T124A, T125S, V201I, T206S, T218TS, D256E, R284G  
CA220375 CA442772 Unknown    E11D, S24N, S119P, T125A, V126L, I135V, G193R, V201VI, T206S, I208IL, K240R, N254K, S255G, A265AV, I268IL, R269RK, R284RG  
CA22078 CA444268 Unknown  E92Q  E11D, S24N, V32I, S39C, L74M, T112S, S119P, V201I  
CA221301 CA444378 Unknown    L45V, L101I, T112V, I135V, V201I, I208L, E212A, K215Q  
CA221306 CA444389 Unknown    K14R, S17C, S39C, G59E, A91E, L101I, S119R, T122I, T124N, T125A, Q216H, L234I  
CA221310 CA444396 Unknown    S17N, M22I, A49G, T112V, I113V, T124A  
CA221313 CA444405 Unknown    V31VI, S39C, M50MI, L101I, T125A, K156N, K240R  
CA221328 CA444441 Unknown    P30A, I72V, E96D, L101I, L158*, K160R, V201I, S230N, D256E, S283G K159L 
CA221334 CA444456 Unknown    V31VI, L45V, A80S, L101V, K103R, T124N, T125A, F181L, V201I, T206S, M275V  
CA221340 CA444469 Unknown    V31I, M50I, L101I, K111T, S119P, T122I, T218S, D256E, S283G  
CA221341 CA444470 Unknown    D6E, K7R, V32I, L68V, I72V, T124N  
CA221353 CA444497 Unknown    E11D, E13ED, V31I, M50L, L101I, S119T, T124N, I135V, G163V, V201I, A205S, S230N, R231K, D256E  
CA221359 CA444507 Unknown    S17SN, M50I, L63I, K71KQ, I72IV, L101LI, S119R, Q177QL, T206TS, D256E, S283SG F185FC 
CA221360 CA444510 Unknown    K7R, V31I, I72IV, L101I, K111T, T122I, T124A, N222NH, D232DE, S283SG  
CA221369 CA444533 Unknown    E11D, S17T, R20K, V37I, S119G, T124N, T125A, T206S, D256E  
CA221372 CA444538 Unknown    L45I, L101I, S119P, T122I, G163E, G193R, V201I, D256E, I268L  
CA221373 CA444541 Unknown    E11D, I72V, K111T, S119P, T122I, T125A, D167E, G193R, V201I, T206S, E212A, K219E, S230N  
CA221401 CA444598 Unknown    D6DE, E10D, V31VI, G59E, L74I, A80S, L101I, T124A, T125A, T206S, Q216H, S283SG  
CA221413 CA444625 Unknown    E11D, A23V, L101I, G193E, L234I, D256E  
CA221424 CA444648 Unknown    E11D, S24N, D25E, V31I, M50L, T125A, V126M, M154L, K211T, T218S, D229DE, S230N, S255SN  
CA27940 CA444281 Unknown    E11D, V31I, L101I, K111T, T112A, G193E, D279G, D286N  
CA30154 CA444990 RAL, Unknown 43   E10D, K14KR, V31I, L45Q, I72V, I84M, V201I, N254Q, S255G, D286DN  
CA4291 CA441881 DTG 136   K7KR, V31VI, L101I, I135IV, K136KN, K211KQ, D232E, A265AV  
CA57546 CA444293 RAL, DTG 342   K14KR, R20RK, I72V, L101I, T112A, I161X, E198D, D253DE  
CA70527 CA445009 None    V31I, S39C, L45T, T112V, I113IV, T124N, T125A, I135V, G163E, R187K, V201I, S230N  
CA7930 CA444256 EVG 57 E92Q E157EQ E10D, M50I, I72V, L101I, K111Q, T112A, T124A  
CA82297 CA444306 None    F100S, L101I, S119P, T125A, M154I, R187K, V201I, A205S, T206S, I208IL, T210TI, S230N, D256E  
CA90737 CA444315 Unknown  E92Q T97A E11D, V31I, S57SG, L101I, K111T, S119T, T124TA, T125V, R224RW, S283G I182IF 

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