Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Avi (2014)
Title Full-length genome sequences of Estonian HIV-1 CRF06 and Eastern-European subtype A1 recombinant forms.
Citation BMC Infect Dis
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 10
NumPts 10
Subtype CRF06_cpx, CRF02_AG

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
41 41 Unknown Unknown   K20R, K32R, V35T, V60I, K122E, D123S, Q174R, D177E, I178M, T200V, Q207E, R211K, V245E, E248D, D250E, S251N, A272P, K277R, T286A, K287R, A288T, E291D, V292I, I293V, E297A, I329V, Q334N, F346H, R356K, M357I, R358K, G359S, T377M, I382V, K390R, A400T, E413D, K431T, A437V, T450S, L452K, T470S, D471E, H483N, L491S, S519N, A534S, A554S  
69 69 Unknown Unknown   K20R, V35T, V60I, I142T, Q174R, D177E, I178M, T200V, Q207G, R211K, E248D, D250E, A272P, K277R, T286A, K287R, E291D, V292I, I293V, E297A, D324E, Q334H, F346H, R356K, M357I, R358K, G359S, E370D, T377M, I382V, K390R, A400T, E413D, K431T, L452K, K465R, T470S, D471E, H483N, L491S, S519N, A534S, A554S  
A12 A12 Unknown Unknown   E6K, K20R, K32R, V35T, E36D, E53K, V60I, I142T, A158S, D177E, I178M, T200A, Q207E, R211K, V245E, E248D, D250E, A272P, K277R, T286A, K287R, E291D, V292I, I293V, E297A, Q334H, F346H, R356K, M357I, R358K, G359S, E370A, T377M, I382V, K388R, K390R, A400T, E415K, K431T, A437V, L452K, Q464H, K465R, T470S, D471E, H483N, G490R, L491S, S513X, S519N, I526X, A534S, A554S E413N 
A13 A13 Unknown Unknown   K20R, V35I, T39A, V60I, I135T, I142T, D177E, T200A, Q207E, R211K, V245E, E248D, D250E, A272P, T286A, E291D, V292I, I293V, P294T, I326V, G335D, R356K, M357K, R358G, G359S, E370A, A371V, I375V, S379G, K390R, T403M, L452I, V458I, S468P, L469I, D471E, Q480H, L491S, K512N, S519N, A534S, A554S  
A14 A14 Unknown Unknown   K20R, K32R, V35I, V60I, I142T, A158S, K173S, Q174K, D177E, Q207A, R211S, V245E, E248D, D250E, A272P, K277R, K287R, E291D, V292I, I293V, E297T, Q334H, F346H, R356K, M357I, R358K, G359S, T377I, E378K, I382V, K390R, A400T, L452I, S468P, T470S, D471E, K476R, H483N, L491S, S519N, A534S, A554S  
A19 A19 Unknown Unknown   K20R, K32R, V35T, V60I, K104N, K173L, Q174K, D177E, Q207A, R211S, E248D, A272P, T286A, K287R, E291D, V292I, I293V, E297A, S322T, I329L, Q334H, F346Y, R356K, M357I, R358K, G359S, T377M, I382V, K390R, A400T, E413D, K431T, L452K, R461K, K465R, T470S, D471E, H483N, L491P, S519N, A534S, A554S  
A21 A21 Unknown Unknown   K20R, V35T, V60I, I142T, D177E, T200V, Q207E, R211K, V245Q, E248D, D250E, A272P, K277R, T286A, E291D, V292I, I293V, E297A, F346H, R356K, M357I, R358K, G359S, E370D, T377M, I382V, K390R, A400T, E413D, K431T, L452K, K465R, T470S, D471E, H483N, L491S, S519N, A534S, A554N  
A45 A45 Unknown Unknown   K20R, K32R, V35T, V60I, D123E, I135T, I142T, Q174R, D177E, I178M, T200A, Q207E, R211K, V245E, E248D, D250E, A272P, K277R, T286A, K287R, E291D, V292I, I293V, E297A, Q334H, F346H, R356K, M357I, R358K, G359S, A376S, T377M, V381I, I382V, K390R, A400I, E413D, K431T, L452K, K465R, T470S, D471E, H483N, L491S, E516D, S519N, A534S, A554S  
A48 A48 Unknown Unknown  K103N, V179E K11T, T27S, K122E, I135T, S162A, Q174N, D177E, I178M, T200A, Q207E, R211K, I244M, V245Q, D250E, T286A, E291D, V292I, I293V, P294T, S322T, I326V, G335D, R356K, M357R, R358K, G359S, E370D, A371L, I375V, T377V, K390R, T403M, E432D, V435A, V466I, D471E, Q480H, L491S, K512R, S519N, Q524K, K527E, E529D, A534S, V548I, A554N, K558R  
A49 A49 Unknown Unknown   K20R, V35T, V60I, I142T, D177E, T200A, Q207E, R211K, V245E, E248D, D250E, A272P, K277R, T286A, K287R, E291D, V292I, I293V, E297A, V317A, Q334H, F346H, R356K, M357I, R358K, G359S, E370D, T377M, I382V, K390R, A400T, E413D, K431T, L452K, K465R, T470S, D471E, H483N, L491S, S519N, A534S, A554S