Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Billings (2019)
Title New Subtype B Containing HIV-1 Circulating Recombinant of sub-Saharan Africa Origin in Nigerian Men Who Have Sex With Men.
Citation J Acquir Immune Defic Syndr
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 152
NumPts 152
Subtype CRF02_AG, G, B, A, CRF43_02G, CRF06_cpx

 

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Page 1   listing Isolate 1 to Isolate 100 from Total 152 Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
20004v01 20004v01 None    I13V, K14R, G17E, K20I, M36I, N37S, R41K, I64M, H69K, K70R, L89M  
20010v01 20010v01 None    I13V, K14R, G16E, K20V, M36I, R41K, H69K, I72L, L89M  
20012v01 20012v01 None    I13V, K14R, G16E, K20I, M36I, N37S, R41K, L63P, H69K, I72V, L89M  
20016v01 20016v01 None    I13V, K14KR, G16GE, K20I, M36I, R41K, H69K, L89M  
20023v01 20023v01 None    I13V, K14R, K20I, M36I, R41K, H69K, L89M  
20028v01 20028v01 None    I13V, K20I, M36I, N37D, R41K, H69K, I72M, L89M  
20033v01 20033v01 None    I13V, K14R, K20I, L33LV, E35D, M36I, R41K, H69K, K70KR, L89M  
20037v01 20037v01 None    I13V, K14R, G16E, K20I, M36I, R41K, H69K, L89M  
20041v01 20041v01 None    I13V, G16E, K20I, E35D, M36I, R41K, G68E, H69K, K70R, L89M  
20042v01 20042v01 None    L10I, I13V, K14R, G16E, L19P, K20I, M36I, R41K, H69Q, L89M  
20043v01 20043v01 None    I13V, G16E, K20I, E35D, M36I, R41K, I64M, H69K, K70R, V77VI, L89M  
20049v01 20049v01 None    L10I, I13V, K14R, I15V, K20I, E35Q, M36I, R41K, R57K, L63P, C67E, H69K, V82I, L89M  
20055v01 20055v01 None    I13V, K14R, K20I, M36I, N37S, R41K, H69K, L89M  
20056v01 20056v01 None    I13V, K14R, K20I, M36I, R41K, Q61QR, I64V, H69K, K70R, L89M  
20063v01 20063v01 None    I13V, K20I, M36I, R41K, H69K, L89M  
20063v01_LH01 20063v01_LH01 None    I13V, K20I, M36I, R41K, H69K, L89M  
20065v01 20065v01 None    L63A, V77I  
20071v01 20071v01 None    L10V, T12I, I13V, I15V, K20I, M36I, N37T, R41K, I64M, H69K, L89M  
20075v01 20075v01 None    I13V, K14R, K20I, M36I, N37D, R41K, H69K, L89M  
20076v01 20076v01 None    I13V, G16E, K20I, E35D, M36I, R41K, H69K, K70R, L89M  
20078v01 20078v01 None    I13V, K14R, Q18K, K20I, E35Q, M36I, N37D, R41K, R57K, L63P, C67E, H69K, V82I, L89I  
20079v01 20079v01 None    I13V, K14R, K20I, E35Q, M36I, N37D, R41K, R57K, C67E, H69K, V82I, L89M  
20082v01 20082v01 None    I13V, G16E, K20I, M36I, R41K, I64M, H69K, K70R, L89M  
20085v01 20085v01 None    I13A, K20I, A22V, M36L, N37E, R57K, L63S, H69K, K70R, L89M E35E_N 
20090v01 20090v01 None    I13V, K20I, M36I, R41K, H69K, I72IM, L89M  
20092v01 20092v01 None    I13V, G16E, K20I, E35D, M36I, R41K, H69K, I72V, L89M  
20093v01 20093v01 None    I13V, K14R, K20I, M36I, R41K, I64M, H69K, L89M  
20095v02 20095v02 None    L10IV, I13V, K14KI, I15V, G16E, K20I, E35DN, M36I, R41K, L63S, H69K, K70R, L89M  
20098v01 20098v01 None    I13V, K20I, E35Q, M36I, R41K, R57K, L63P, I64L, C67E, H69K, V82I, L89M  
20101v01 20101v01 None    I13V, K20V, M36I, R41K, H69K, L89M  
20102v01 20102v01 None    L10I, I13V, K14R, G16E, L19P, K20I, M36I, R41K, L63S, L89M H69L 
20104v01 20104v01 None    I13V, G16E, K20I, E35D, M36I, R41K, H69K, K70R, L89M  
20105v01 20105v01 None    I13V, G16E, K20I, M36I, R41K, I64V, G68E, H69K  
20111v01 20111v01 None    T12TS, I13V, G16E, K20I, E35D, M36I, R41K, R57RK, L63PS, H69K, L89M V56VI 
20113v01 20113v01 None    I13V, G16E, K20I, E35D, M36I, R41K, H69K, I72V, L89M  
20114v01 20114v01 None    L10I, I13V, K14R, I15V, K20I, E35Q, M36I, R41K, R57K, L63P, C67E, H69K, V82I, L89M  
20120v01 20120v01 None    L10I, I13V, G16E, L19P, K20I, M36I, R41K, H69Q, I72V, L89M  
20124v01 20124v01 None    I13V, K14R, G16E, K20I, M36I, R41K, I64M, H69K, I72V, L89M  
20126v01 20126v01 None    I13V, K14R, G16E, K20I, M36I, N37S, P39S, R41K, H69K, L89M  
20129v01 20129v01 None    L10I, I13V, K14R, K20I, E35Q, M36I, R41K, R57K, L63PS, C67E, H69K, V82I, L89M  
20131v01 20131v01 None    I13V, K14R, G16E, K20I, M36I, R41K, H69K, I72Q, L89M  
20132v01 20132v01 None    T12K, I13V, K14R, K20I, E35EG, M36I, N37NS, P39PS, R41K, H69K, K70R, L89M  
20135v01 20135v01 None    L10IV, I13V, G16E, K20I, M36I, R41K, H69K, K70R, L89M  
20143v01 20143v01 None    I13V, G16E, K20I, M36I, R41K, H69K, L89M  
20144v01 20144v01 None    I13V, G16E, K20I, E35D, M36I, R41K, R57K, L63LF, H69K, K70R, L89M  
20145v01 20145v01 None    I13V, G16E, L19F, K20I, E35D, M36I, R41K, I64M, H69K, K70R, L89M  
20148v01 20148v01 None    I13V, K14R, I15V, K20I, M36I, N37D, R41K, H69K, I72M, L89M  
20154v01 20154v01 None    I13A, K14R, K20I, M36I, N37D, R41K, H69K, V82I, L89M  
20156v01 20156v01 None    I13V, K14R, I15IV, Q18H, K20I, M36I, N37D, R41K, I64M, C67S, H69R, L89M  
20157v01 20157v01 None    I13V, I15V, K20I, M36I, N37D, R41K, I64M, C67S, H69K, L89M  
20158v01 20158v01 None    L10I, I13V, K14R, I15V, K20I, E35Q, M36I, R41K, R57K, I62V, L63S, C67E, H69K, V82I, L89M  
20160v01 20160v01 None    L10I, I13V, K14R, I15V, G16E, K20I, M36I, R41K, L63S, C67G, H69K, K70R, L89M  
20162v01 20162v01 None    I13V, K14R, G16E, K20I, M36I, R41K, I64M, H69K, I72V, L89M  
20163v01 20163v01 None    L10V, I13V, G16E, K20I, E35D, M36I, R41K, H69K, K70R, L89M  
20164v01 20164v01 None    L10V, V11I, I13V, K14R, G16E, K20I, M36I, R41K, H69K, L89M  
20165v01 20165v01 None    I13V, K14R, L19I, K20I, E35Q, M36I, R41K, R57K, L63P, I64M, C67E, H69K, V82I, L89M  
20166v01 20166v01 None    I13V, G17E, K20I, E21EK, E35Q, M36I, N37D, R41K, R57K, L63P, I64M, C67E, H69K, V82I, L89M  
20168v01 20168v01 None    I13V, K14R, K20I, M36I, N37S, R41K, H69K, L89M  
20170v01 20170v01 None    I13V, G16E, K20I, E35ED, M36I, R41K, K43KR, I64M, H69K, L89M  
20173v01 20173v01 None    L10V, I13V, G16E, K20I, M36I, R41K, H69Q, L89M  
20178v01 20178v01 None    I13V, G16E, K20I, M36I, R41K, I62K, H69K, L89M  
20178v01_LH01 20178v01_LH01 None    I13V, G16E, K20I, M36I, R41K, I62K, H69K, L89M  
20180v01 20180v01 None    I13V, K20I, M36I, N37D, R41K, H69K, I72M, L89M  
20181v01 20181v01 None    I13V, K14R, I15V, K20I, M36I, N37D, R41K, H69K, I72M, L89M  
20183v01 20183v01 None    I13A, K14R, K20I, M36I, R41K, H69K, L89M  
20184v01 20184v01 None    I13V, K14R, K20I, E35N, M36I, N37D, R41K, I64V, E65D, H69K, T74S  
20185v01 20185v01 None    I13V, K20I, M36I, N37E, L38I, H69K, L89M  
20186v01 20186v01 None    I13V, K14R, G16D, K20I, E35D, M36I, R41K, F53Y, L63P, H69K, V77IM, L89M  
20191v01 20191v01 None    I13V, G16E, K20I, E35D, M36I, R41K, H69K, K70R, L89M, I93IV  
20192v01 20192v01 None    I13V, K14R, K20I, E35Q, M36I, N37D, R41K, R57K, L63T, C67E, H69K, V82I, L89M  
20198v01 20198v01 None    I13V, G16E, L19F, K20I, E35D, M36I, R41K, H69K, K70R, V82I, L89M  
20207v01 20207v01 None    I13V, K14R, L19LI, K20I, M36I, N37S, P39S, R41K, I64IM, H69K, K70R, L89M  
20216v01 20216v01 None    I13V, K14R, I15V, K20I, M36I, N37D, R41K, H69K, I72M, L89M  
20219v01 20219v01 None    L10I, I13V, K14R, G16E, L19P, K20I, E35D, M36I, R41K, L63H, H69K, L89M  
20221v01 20221v01 None    I13V, K14R, K20I, M36I, N37E, R41K, H69K, V82I, L89M  
20228v01 20228v01 None    L10I, I13V, K14R, G16E, K20I, M36I, N37T, P39S, R41K, I62V, L63A, H69K, K70KR, L89M  
20229v01 20229v01 None    I13V, K14KR, K20I, M36I, R41K, H69K, K70KR, A71AT, L89M  
20230v01 20230v01 None    I13V, K14KR, K20I, M36I, R41K, H69K, K70R, L89M  
20231v01 20231v01 None    I13V, K14R, K20I, E35N, M36I, N37D, R41K, I64V, E65D, H69K, T74S  
20241v01 20241v01 None    I13V, I15V, Q18K, K20I, E35D, M36I, N37D, R41K, C67S, H69K, L89M  
20242v01 20242v01 None    I13V, K14R, K20I, M36I, R41K, H69K, L89M  
20243v01 20243v01 None    I13V, I15V, Q18K, K20I, E35D, M36I, N37D, R41K, I64M, C67S, H69K, L89M  
20251v01 20251v01 None    I13V, K14R, K20I, M36I, R41K, H69K, L89M  
20254v01 20254v01 None    T12X, I13V, K14X, G16E, K20I, M36I, R41K, I64M, H69K, L89M  
20256v01 20256v01 None    I13V, K14R, K20I, E35Q, M36I, N37D, R41K, R57K, L63P, C67E, H69K, I72IM, V82I, L89M  
20265v01 20265v01 None    I13V, K20I, E35Q, M36I, N37D, R41K, R57K, L63LP, C67E, H69K, V82I, L89M  
20267v01 20267v01 None    L10I, I13V, K14R, I15V, E35D, M36I, R41K, H69Q, L89M  
20268v01 20268v01 None    I13V, L19P, K20I, M36I, R41K, L63P, I64L, H69K, L89M  
20271v01 20271v01 None    I13V, K14G, K20I, M36I, R41K, H69K, L89M  
20277v01 20277v01 None    I13V, K14R, G16E, K20I, E35G, M36I, R41K, H69K, K70R, V77I, L89M  
20278v01 20278v01 None    L10I, I13V, G16E, L19P, K20I, M36I, R41K, L63H, H69Q, L89M  
20279v01 20279v01 None    I13V, G16E, K20I, E35D, M36I, R41K, H69K, L89M  
20281v01 20281v01 None    I13AV, K14KR, I15IV, G16GE, K20I, E35EK, M36I, N37ND, R41K, H69K, I72IM, L89M  
20284v01 20284v01 None    I13V, K14R, I15V, K20I, E35Q, M36I, N37D, R41K, R57K, C67E, H69K, V77I, V82I, L89M  
20286v01 20286v01 None    I13V, K14R, K20I, E35Q, M36I, R41K, R57K, I62V, L63P, C67E, H69K, V82I, L89M  
20287v01 20287v01 None    I13V, K14KR, K20I, M36I, R41K, H69K, K70KR, L89M  
20288v02_LH01 20288v02_LH01 None    I13V, K14R, G16E, K20I, E35D, M36I, N37H, R41K, I64M, H69K, L89M  
20291v01 20291v01 None    I13V, K14R, I15V, K20I, M36I, N37D, R41K, H69K, I72M, L89M  
20295v01 20295v01 None    I13V, K14R, G16E, K20I, M36I, P39Q, R41K, I64M, H69K, K70R, V77I, L89M  
20300v01 20300v01 None    I13V, K14R, K20I, M36I, N37S, R41K, I64M, H69K, L89M