Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Khairunisa (2018)
Title Genotypic Characterization of Human Immunodeficiency Virus Type 1 Prevalent in Kepulauan Riau, Indonesia.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 29
NumPts 29
Subtype CRF01_AE, B, CRF02_AG, CRF74_01B

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
TP1 TP1 NRTI NNRTI   K11T, V21I, V35T, T39K, V60I, K122E, D123S, I142T, K173I, Q174K, D177E, T200I, Q207A, R211S, K238R, V245E  
TP10 TP10 NRTI NNRTI   P4H, E6D, T7P, E169D, Q174K, R211K, V245A, E248V G15A, K20V 
TP11 TP11 NRTI NNRTI  V179D P1S, T107S, K122E, I135V, S162C, T200A, V245T  
TP12 TP12 NRTI NNRTI   K11T, V35T, E36K, T39K, K43E, V111I, K122E, D123S, I135T, Q174K, D177E, I178M, V179I, T200G, Q207A, R211S, K238R, V241I, V245E  
TP13 TP13 NRTI NNRTI   K20R, V60I, I135K, K173T, Q174K, D177E, I178M, T200A, L210M, R211S, V245M  
TP14 TP14 NRTI NNRTI   V35I, T39S, K122E, S162C, K173T, Q174K, D177E, T200A, Q207A, R211K, K238R, V245E  
TP16 TP16 NRTI NNRTI   V35T, T39K, K43E, W88C, K122E, D123N, K173T, Q174K, D177E, I178V, I202V, Q207A, R211S, K238R, V245E  
TP20 TP20 NRTI NNRTI   E6D, E53D, S162C, E169D, S191F, I202V, Q207E, R211K  
TP21 TP21 NRTI NNRTI   K11R, V35I, K43R, S68G, E169K, E204K, Q207E, V245M  
TP22 TP22 NRTI NNRTI  V106I V21I, V35T, T39A, E40D, K64R, K102R, K122E, D123S, K173I, Q174K, D177E, I178V, T200A, E204V, Q207A, R211S, K238R, V245E H198Q, I202K 
TP28 TP28 NRTI NNRTI   K11A, V35T, T39E, E40D, W88S, K122E, D123N, K173I, Q174K, D177E, T200I, Q207A, R211S, K238R, V245A  
TP29 TP29 NRTI NNRTI   V35T, T39E, E40D, W88S, K122E, D123N, K173I, Q174K, D177E, T200I, Q207A, R211S, F214L, K238R  
TP31 TP31 NRTI NNRTI   K11A, V35T, T39E, E40D, W88S, K122E, D123N, K173I, Q174K, T200I, I202V, Q207A, R211S, K238R, V245A  
TP32 TP32 NRTI NNRTI  V106I V21I, V35T, T39A, E40D, K64R, K122E, D123S, K173I, Q174K, D177E, I178V, V179I, T200I, Q207A, R211S, K238R, V245E  
TP33 TP33 NRTI NNRTI   P4L, T7S, P9T, V35T, T39N, S162C, E203K, Q207E E6W 
TP34 TP34 NRTI NNRTI   K11T, K20R, V35T, T39K, K43E, V60I, K173T, Q174K, D177E, T200I, Q207A, R211S, V245E  
TP35 TP35 NRTI NNRTI   V10I, K11S, V35T, T39K, K43E, Q91H, K122E, D123S, S162C, K173A, Q174K, D177E, T200A, Q207A, R211S, V245E, K249R P59A, A62Y, D76V, V90F 
TP36 TP36 NRTI NNRTI   K11T, K20R, V35M, K122E, I135T, K173L, Q174K, D177E, E194D, T200I, E203D, Q207A, R211S, F214L, K238R, V245E N81H 
TP37 TP37 NRTI NNRTI   K20R, V35M, E36D, T39A, K122E, D123N, I135L, S162A, T165I, K173A, Q174R, D177E, I178M, T200A, Q207E, R211K, V245E  
TP41 TP41 NRTI NNRTI   E28K, K32E, V35T, K122E, D123S, R172K, K173I, Q174K, D177E, Q207A, R211S, Y232D, V245K  
TP43 TP43 NRTI NNRTI   D121H, K122E, I135V, S162C, Q207E, V245I  
TP44 TP44 NRTI NNRTI   K11Q, K22R, W88C, K173T, Q174K, E203K, F214L, K238R, V245E  
TP51 TP51 NRTI NNRTI   K11S, V35T, T39E, E40D, K122E, D123N, I142V, K173I, Q174K, D177E, I178M, Q207A, R211S, K238R, V245E, L246R  
TP53 TP53 NRTI NNRTI   K11T, V35T, T39R, K43E, K122E, D123S, I135R, S162C, K173I, Q174K, I178M, T200A, Q207A, R211S, K238R, V245E  
TP57 TP57 NRTI NNRTI   V35T, E36D, T39K, K43E, K122E, D123S, Q174K, D177E, I202V, Q207A, L210S, R211S, V245E, E248S  
TP58 TP58 NRTI NNRTI  L234I K11T, V35T, T39E, S68G, V75L, K122E, D123N, K173I, Q174K, D177E, Q207A, R211S, K238R, V245E P236R 
TP61 TP61 NRTI NNRTI  L234I K11T, V35T, T39E, K64R, R83K, K122E, D123S, I135T, R172K, K173I, Q174K, D177E, I178M, T200A, Q207A, R211S, K238R, V245E P236R 
TP62 TP62 NRTI NNRTI   K11T, V35T, T39D, A98S, K122E, D123N, I135K, K173I, Q174K, D177E, I178M, T200E, R211S, K238R, V245E, S251I Q207I 
TP8 TP8 NRTI NNRTI M184V V106I, Y188L K11T, V35T, T39E, K122E, D123N, S162C, K173Q, Q174K, D177E, V179I, Q207A, R211S, K238R, V245K