Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Bbosa (2019)
Title Phylogeography of HIV-1 suggests that Ugandan fishing communities are a sink for, not a source of, virus from general populations.
Citation Sci Rep
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 562
NumPts 562
Subtype A, D, C, B, CRF10_CD, CRF35_AD, CRF07_BC, CRF18_cpx, G

 

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Page 1   listing Isolate 1 to Isolate 100 from Total 562 Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
1406001 1406001 Unknown    I13V, K14R, E35D, M36I, R41K, R57K, L63P, H69K, L89M  
1406002 1406002 Unknown  M46ML  I13V, G16E, E35D, M36I, R41K, G49X, I62IV, L63T, I64V, E65ED G51GR 
1406003 1406003 Unknown    L10V, I13V, G16E, K20I, E35D, M36I, R41K, I64V, I72V  
1406004 1406004 Unknown    I13V, G16E, E35D, M36I, R41K, K45R, R57K, H69K, L89M  
1406006 1406006 Unknown    I13V, G16E, K20R, E35D, M36I, P39S, R41K, K43R, K45R, R57K, L63S, H69K, L89M  
1406007 1406007 Unknown    L10V, I13V, I15V, E35D, M36I, R41K, I62V, L63V, H69K, T74S, L89M  
1406008 1406008 Unknown    I13V, K14R, E35D, M36I, R41K, K45R, R57K, L63P, H69K, L89M  
1406009 1406009 Unknown    I13V, K20R, E35D, M36I, R41K, K45R, H69K, I72IM, L89M  
1406012 1406012 Unknown    I13V, K14R, M36I, R41K, R57K, D60E, L63P, I64V, K70R, I72V  
1406013 1406013 Unknown  M46I  L10I, I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M  
1406014 1406014 Unknown    I13V, K14R, K20L, E35D, M36I, R41K, H69K, L89M  
1406018 1406018 Unknown    I13V, K20R, M36I, R41K, L63Q, I64V, E65D  
1406019 1406019 Unknown    L10V, E35D, M36I, R41K, R57K, H69K, L89M  
1406020 1406020 Unknown    I13V, G16A, E35D, M36I, R41K, H69K, L89M  
1406022 1406022 Unknown    G16E, R41K, L63T, E65D, I72T, V75I, V77I  
1406023 1406023 Unknown    I13V, M36I, R41K, H69K, T74S, L89M, I93L  
1406024 1406024 Unknown    I13V, K20R, E35D, M36I, N37D, R57K, L63H, H69K, G78R, L89M G51K, G68R, G86K, G94S 
1406025 1406025 Unknown    L10I, I13V, G16E, E35D, M36I, N37D, R41K, K45R, R57K, L63H, H69K, K70R, L89M  
1406026 1406026 Unknown    I13V, E35D, M36I, R41K, R57K, L63I, H69K, L89M  
1406027 1406027 Unknown    I13V, K14R, I15V, L19I, E35D, M36I, R41K, R57K, I62V, L63P, H69K, L89M  
1406029 1406029 Unknown    I13V, K14R, K20R, M36I, R41K, I62V, I64V, E65D, H69Y, I72T  
1406032 1406032 Unknown    I13V, E35D, M36I, R41K, R57K, H69K  
1406033 1406033 Unknown    I13V, G16E, L19I, K20R, E35D, M36I, R41K, R57K, H69K, I72V, L89M  
1406034 1406034 Unknown    L10I, I13V, I15V, E35D, M36I, R41K, R57K, C67Y, H69K, L89M  
1406035 1406035 Unknown    I13V, K20R, M36I, R41K, I62V, I64V, V82I  
1406036 1406036 Unknown    I13V, I15V, E35D, M36I, R41K, R57K, C67Y, H69K, L89M  
1406038 1406038 Unknown    I13V, G16E, E35D, M36I, R57K, I64M, H69K, L89M  
1406039 1406039 Unknown    I13V, N37NS, R41K, I64V, H69Y  
1406040 1406040 Unknown    I13V, R41K, L63P  
1406041 1406041 Unknown    L10I, I13V, R41K, Q61D, L63S, C67D, I72M, V77I  
1406043 1406043 Unknown    I13V, R41K, I64V, H69Y, I72V, V77I  
1406044 1406044 Unknown    I13V, K20R, M36I, R41K, I62V, I64V  
1406045 1406045 Unknown    I13V, M36I, R41K, K45R, H69K, L89IM  
1406046 1406046 Unknown    I13V, E35D, M36I, N37D, R41K, R57K, D60E, H69K, L89M M46MT 
1406047 1406047 Unknown    E35D, M36I, R41K, R57K, H69K, L89M  
1406048 1406048 Unknown    I13V, E35D, M36I, R57K, L63P, H69K, L89M  
1406049 1406049 Unknown    I13V, E35D, M36I, R41K, R57K, H69K, L89M  
1406050 1406050 Unknown    I13V, K14R, G16E, K20R, E35D, M36I, R41K, R57K, H69K, L89M  
1406051 1406051 Unknown    I13V, K14R, I15V, E35D, M36I, R41K, R57K, H69K, L89M  
1406052 1406052 Unknown   L33F I13V, K14R, M36I, P39T, R41K, H69Q, L89M K20KE 
1406053 1406053 Unknown    I13V, K14R, G16E, K20R, E35D, M36I, R41K, R57K, H69K, I72V, L89M  
1406054 1406054 Unknown    I13V, K20R, M36I, R41K, I64V, I72V  
1406055 1406055 Unknown    T12S, K14R, G16E, K20R, M36I, R41K, R57K, D60E, I62V, I64V, I72V, V82I  
1406057 1406057 Unknown    L10V, I13V, G16E, K20R, E35D, M36I, R57K, L63V, H69K, L89M  
1406058 1406058 Unknown    I13V, K14R, E35D, M36I, R41K, R57K, L63P, H69K, L89M  
1406059 1406059 Unknown    I13V, K20R, E35D, M36I, R41K, R57K, L63AV, H69K, K70R, L89M  
1406060 1406060 Unknown    I13V, K20R, E35D, M36I, R57K, L63S, H69K, L89M G68R 
1406061 1406061 Unknown    E35D, M36I, R41K, I64V, I72V  
1406063 1406063 Unknown    T12A, I13V, K14R, I15V, G16E, E35D, M36I, R41K, I62V, L63T, H69K, V82I, L89M  
1406065 1406065 Unknown    I13V, K20KR, E35D, M36I, R41K, R57K, H69K, L89M  
1406066 1406066 Unknown    I13V, L33V, M36I, R41K, L63P, I64V, K70R  
1406068 1406068 Unknown    L10I, I13V, K14R, E35D, M36I, R41K, R57K, L63V, H69K, L89M  
1406069 1406069 Unknown    L10I, I13V, G16E, K20R, E35D, M36I, P39S, R41K, L63T, H69Q, L89M  
1406070 1406070 Unknown    I13V, M36I, R41K, I62V, L63P, I64V, H69Y, I72V  
1406071 1406071 Unknown    I13V, I15V, M36I, R41K, H69K, L89M  
1406072 1406072 Unknown    Q18H, M36I, R41K, K45KR, I64V, H69HY  
1406073 1406073 Unknown    E35D, M36I, R41K, R57K, I62V, L63V, I64M, H69K, T74S, L89M  
1406074 1406074 Unknown    I13V, K14R, E35D, M36I, N37D, R41K, I62IV, I64V, E65D  
1406075 1406075 Unknown    L10V, G16E, M36I, P39T, R41K, H69R, L89M, I93L  
1406076 1406076 Unknown    I13V, K14R, M36I, R41K, L63P  
1406077 1406077 Unknown    L10I, I13V, K14R, E35D, M36I, R41K, R57K, H69K, L89M  
1406078 1406078 Unknown    I13V, K14R, E35D, M36I, R41K, R57K, H69K, L89M  
1406079 1406079 Unknown    I13V, I15V, E35D, M36I, R41K, R57K, H69K, K70KR, V82I, L89M  
1406080 1406080 Unknown    L10V, I13V, K14R, I15V, E35D, M36I, R41K, K45R, R57K, L63LP, H69K, I72V, L89M  
1406081 1406081 Unknown    I13V, G16E, K20R, M36I, R41K, R57K, D60E, I62V, L63P, I64V, I72V, V82I  
1406082 1406082 Unknown    I13V, E35D, M36IV, R41K, G48E, H69K, G78R, L89M G51R, G52S, G86R, G94GS 
1406083 1406083 Unknown    I13V, K20R, E35D, M36I, R41K, R57K, L63A, H69K, L89M  
1406084 1406084 Unknown    I13V, M36I, N37S, G48R, L63Q, I64V, E65D, R87K G68R, G94S 
1406085 1406085 Unknown    T12A, R41K, V77I  
1406086 1406086 Unknown    I13V, K14R, E35D, M36I, R41K, R57K, H69K, L89M  
1406087 1406087 Unknown    I13V, L33V, M36I, R41K, R57K, D60E, Q61D, I64V, I72L  
1406088 1406088 Unknown    I13V, M36I, N37D, R41K, D60E, I62IV, L63LP, I64V  
1406089 1406089 Unknown    I13V, E35D, M36I, R41K, K45R, R57K, H69K, L89M  
1406090 1406090 Unknown    L10I, I13V, K14R, G17D, K20R, M36I, R41K, I62V, L63Q, I64V, C67Y  
1406091 1406091 Unknown    I13V, G16A, E35D, M36I, R41K, R57K, Q61H, G68GE, H69KR, L89M  
1406092 1406092 Unknown    L10I, I13V, E35D, M36I, R41K, K45R, R57K, I62V, L63S, I64V, E65D  
1406093 1406093 Unknown    P39T, R41K, D60E, I62V, L63P, I93L  
1406094 1406094 Unknown    I13V, K20R, M36I, R41K, I64V  
1406095 1406095 Unknown    L10V, I13V, L33V, N37T, P39T, R41K, L63Q, I64V, H69Y, I72V  
1406096 1406096 Unknown    I13V, E35D, M36I, N37D, R41K, H69K, L89M  
1406097 1406097 Unknown    I13V, K20R, E35D, M36I, R41K, D60E, I62V, H69K, L89M  
1406098 1406098 Unknown    I13V, G16E, E35D, M36I, P39S, R41K, R57K, D60E, I62V, L63P, I72V  
1406099 1406099 Unknown    I13V, E35D, M36I, R41K, R57K, I62V, L63P, H69K, T74S, L89M  
1406100 1406100 Unknown    L10V, I13V, G16E, L19S, M36I, P39T, R41K, D60E, Q61E, H69K, L89M G94S 
1406101 1406101 Unknown    I13V, G17D, K20R, M36I, R41K, I62V, L63Q, I64V, H69R  
1406102 1406102 Unknown    L10I, I13V, I15V, E35D, M36I, R41K, H69K, L89M  
1406103 1406103 Unknown    M36I, N37D, R41K, V77VI  
1406104 1406104 Unknown    I13V, G16A, E35D, M36I, R41K, R57K, H69K, K70KR, L89M  
1406105 1406105 Unknown    I13V, G16E, L33V, N37S, P39Q, I64V, I72V  
1406106 1406106 Unknown    T12A, I13V, I15V, N37S, R41K, I64V  
1406107 1406107 Unknown    I13V, L33V, P39Q, R41K, L63Q, I64V, I72V  
1406108 1406108 Unknown    I13V, K14R, K20I, M36I, R41K, C67E, H69K, V82I, L89M  
1406109 1406109 Unknown    I13V, M36I, R41K, G49X, L63Q, I64V, G78GR G86GR 
1406110 1406110 Unknown    I13V, E35D, M36I, R41K, R57K, D60DE, Q61QE, H69K, L89M  
1406111 1406111 Unknown    I13V, R41K, D60E, L63P, V77I  
1406112 1406112 Unknown  D30N, M46I  R8Q, I13V, E21K, D25N, M36I, R41K, R57K, D60K, I62V, L63P, I64V, G68E, H69Y, V77I, G78R G51R, G52S, G86R 
1406113 1406113 Unknown    I13V, E35D, M36I, N37S, R41K, K45R, R57K, L63I, H69K, L89M  
1406114 1406114 Unknown    I13V, K20KR, E35D, M36I, N37D, R41K, K45KR, R57K, D60E, H69K, L89M  
1406115 1406115 Unknown    I13V, I15V, M36I, G40GR, R41K, I62V, L63Q, I64V G51GR, G52GRS, G86R, G94S 
1406116 1406116 Unknown    L10I, I13V, E35D, M36I, R41K, R57K, L63LP, C67E, H69K, K70KR, I72IV, L89M