Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Tully (2016)
Title Differences in the Selection Bottleneck between Modes of Sexual Transmission Influence the Genetic Composition of the HIV-1 Founder Virus.
Citation PLoS Pathog
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 71
NumPts 71
Subtype B, CRF02_AG, C

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
1006_08 1006_08 None    S17N, L101I, D253E, A265V  
1012_09 1012_09 None    E11D, T124A, S195T, K211Q, S230N  
1018_10 1018_10 None    S17N, I72V, K156N, D256E, I268L  
1051_11 1051_11 None   E157Q S17N, I72V, K160Q, K188R, T206S, A265V  
1053_06 1053_06 None    S39N, I72V, L101I, T112V, I113V, I161L, V165I, K219N, N222K  
119534 119534 None    E11D, M50I, L101I, K111T, I113V K14N, Y15N, C56V 
135466 135466 None    D6E, E10D, K34R  
136172 136172 None    L28I, L45V, M50I, F181L, T206S, D232E, D256E, S283G  
143200 143200 None    S17N, A23V, S39C, I72V, L101I, T122I, T124N, V201I, S230N, A265V  
147984 147984 None    S17N, S24N, A91T, E96D, L101I, S119R, T124S, T125A, K156N, V165I, I191L, V201I, I208M, K211T, E212A, M275V  
154162 154162 None    E11D, S24N, D25E, I72V, L101I, I113V, S119P, T122I  
159793 159793 None    A23V, S39C, L101I, T112A, S119G, T125V  
172508 172508 None    E11D, V32I, K111T, N254K  
176952 176952 None    E10D, M50I, I72V, L101I, S119R, S123C, K215N, Q216K, I220L  
231603 231603 None    D6E, E10D, V31I, L45Q, K71R, I72V, T124N, T125A, V126M, V201I, D286N  
255524 255524 None    V31I, V32I, I72V, L101I, I135V, V201I  
268977 268977 None    E11D, S39C, L45V, M50I, I72V, S119G, T122I, V201I, K215N, S230G, D232E  
284160 284160 None    K14R, L28I, P30A, I72V, L101I, T112R, K156N, I162V, V201I, D256E  
290307 290307 None    V31I, L101V, T124A, F181L, I208L, E212Q K211S 
293050 293050 None    K7R, R20K, L101I, I113V, T125A, V151I, H171Q, V201I  
296004 296004 None    E11D, S24N, L101I, T112V, I135V, D232E, L234I, D253E  
320435 320435 None    S17N, V31I, G106A, I113V, V201I  
328659 328659 None    E11D, S17T, L101I, T124A, T125A, I135V, G163E, F181L, V201I, I208L, E212A, T218I, Q221K, R269K  
328893 328893 None    V31I, L101I, K111T, I113V, T124A, V201I, S230N, D256E, R269K  
361974 361974 None    E11D, S24N, V31I, M50I, I72V, K156N, V201I  
366396 366396 None    T112V, T124A, G163E, K173R, T218S, I220L, S230N, L234I, K240R  
383086 383086 None    I72V, V77I, I84M, L101I, T112I, T122I, T124N, D256E  
394242 394242 None    E11D, S17T, L45R, I113V, T124A, T125A, G163E, V201I, I208L, E212A, K215N, T218I, Q221K, R269K  
395718 395718 None    V32I, S39C, I72V, L101I, I113V, V201I, I220V, L234I  
433768 433768 None    E10D, I72V, L101I, I135V, K156N, T218S  
464704 464704 None    K42R, L101I, K111T, I113V, D256E, D286N  
479693 479693 None    E11D, V31I, V32I, L101I, K111S, I113V, T124S, T125A, V201I, I203M, A205S  
481216 481216 None    K14R, L45I, L101I, I113V, T124A, G163E, V201I, T206S, I268L, D270H  
481811 481811 None    K7Q, E11D, V31I, V32I, V201I  
489910 489910 None    S24G, L45Q, L101I, D232E  
509452 509452 None    E11D, V31I, C56S, L101I, K211R, K215N, S230N, L234I, A265V  
556743 556743 None    E10D, M50I, V201I, L234F  
571373 571373 None    E11D, S24N, S119P, T122I, T206S, S230N, C280S  
574194 574194 None    E11D, V31I, I72V, T112A, T124A, M154L  
585067 585067 None    D6E, E11D, S17N, V31I, L101I, K111T, T125A, S230N, D253E Q146K 
587196 587196 None    E11D, R20K, V31I, L74I, S119P, G193E, D256E, D286N  
607523 607523 None    D6E, E10D, L101I, K111T, T124A, Q177L  
608647 608647 None   T97A, E157Q E48G, M50I, K71Q, L101I, I113V, S119R, T125A, I135V, K160Q, F181L, V201I, R269K  
622166 622166 None    K7R, E11D, D25E, V31I, L101I, T112V, K136Q, E157D, D167E, G190X, V201I, L234I, R269K, D278A, S283D L158R 
635056 635056 None    E11D, E13D, K111T, T124N, T125V, V201I, D232E, D256E, A265V  
637829 637829 None    S17N, L28I, P30A, I72V, L101I, K156N, V201I, D256E, V260I  
654207 654207 None    L28I, S39C, T206S, I220V, S230N, K240R, S283G  
678584 678584 None    E11D, A21T, S39C, L45Q, I72V, P90S, T124N, T125A, V126L, D167E, V201I, D270N  
689801 689801 None    E11D, S17T, A23V, T122I, T124N, D256E  
701114 701114 None    E11D, K14R, V31I, S57G, I72V, E96D, L101I, T112V, T124G, T125A, G134N, I135V, K136T, V201I, T206S, L234I, D270E, S283G  
702865 702865 None    I113V, T124A, S283G  
822582 822582 None    E11D, V32I, S39C, A91S, L101I, T124A, G193E, I203M, D286N  
862898 862898 None    E11D, V31I, M50I, I72V, S119P, T122I  
863847 863847 None    E11D, E13D, A23T, S57N, I60V, L74I, T112I, S119P, T122I, T124N, S195T, V201I, S283G V110K 
868558 868558 None    R20K, L101I, T122I, T124N, G163E, L234I  
880955 880955 None    E11D, L101I, S119R, V201I, I203M  
882283 882283 None    E10D, M50I, I72V, T124A, I220L, Y227F E13T 
891439 891439 None    S17N, L101I, K111T, T112A, K173R, K215R  
891676 891676 None    E11D, S17C, G106A, T125A, G193E, V201I, T206S, N222K, S230N  
906153 906153 None    E10D, G70E, I72V, L101I, S119P, T122I, M154I, K156N  
912218 912218 None    I60V, T112I, I113V, S119T, T124N, T125V, T218S, M275V, S283G  
923040 923040 None    E11D, S17T, L101I, K111A, I135V, M154I  
929172 929172 None    M50I, L101I, E157N, G193E, V201I, I208L, T218S, D256E  
933384 933384 None    E11D, A21T, L101I, I113V, S119T, T125A, A265V  
947915 947915 None    E11D, L101I, I113L, S119P, T122I, T124A, I200M, V201I, K211T, E212Q, Q216H, S230N, L234I, V249L, D256E  
950965 950965 None    E11D, S24G, D25E, S39C, S119P, G193E, V201I, K211R, D278N V225F, Y226N 
954229 954229 None    K7R, S17N, L28I, S39C, M50I, I72V, S119T, T125V, T206S, D232E, A265V  
956306 956306 None    K7Q, T124A, T125A, V151I, G163Q  
963987 963987 None    V31I, M50T, I72V, T124A, G193E, V201I, I203M, I208L, D288N  
981600 981600 None    E11D, S24N, L101I, K111Q, T112A, S119P, T122I, T125A, V201I, I204V, S283G  
996401 996401 None    S17N, I72V, I84V, F100Y, L101I, T124S, T125A, K127R, K136Q, L234I, D253E, S283G  

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