Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Luk (2015)
Title Utility of Metagenomic Next-Generation Sequencing for Characterization of HIV and Human Pegivirus Diversity.
Citation PLoS ONE
SelectedGene IN
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 25
NumPts 25
Subtype CRF11_cpx, A, G, CRF13_cpx, CRF37_cpx, CRF45_cpx, H, CRF02_AG, D, CRF01_AE, CRF18_cpx, A + J

 

Clinical IN Isolates


SubjectIsolateINIsWksINIMajorINIMinorCommonUnusual
1130-39 1130-39 None    E11D, K14R, A21T, A23V, D25E, V31I, L45I, I72V, T112V, T124A, T125A, G134N, I135V, V201I, T206S, K219N, N222K, L234I, S283G  
1156-26 1156-26 None    K14R, A21T, V32I, S39C, M50I, Q95S, K111R, T112V, I113V, T124A, T125A, G134N, K136T, V201I, L234I, S283G  
119-28 119-28 None    K14R, V31I, L101I, T112V, T124G, T125A, G134N, K136Q, D167E, T206S, K211R, L234I, S283G, R284G, D288N  
1230-24 1230-24 None    K14R, V31I, I60T, Q95H, E96D, L101I, T112V, T124A, T125A, G134D, K136Q, D167E, V201I, I203M, I208L, L234I, R269K, S283G, D288N  
1252-11 1252-11 None    K14R, V31I, T112V, T124A, T125A, G134D, D167E, V201I, K211R, Y227F, L234I, S255N, D256E, S283G  
228-10 228-10 None    D6E, K14R, S17N, V31I, L101I, T112M, T124A, T125A, G134N, K136T, V201I, T206S, D207E, L234I, D256E, R269K, S283G  
260-50 260-50 None    K14R, V31I, L45I, L101I, T112V, T124A, T125A, K136Q, D167E, V201I, I208L, L234I, D256E, S283G  
263-26 263-26 None    K14R, S24N, V31I, I60T, E96D, Y99F, L101I, T112I, T124S, T125A, K136Q, V165I, D167E, V201I, I208L, L234I, N254K, S283G  
280-10 280-10 None    S24G, L28I, L45I, M50I, L101I, T112V, S119P, T124A, T125A, G134D, I135V, D167E, V201I, Q216R, T218I, K219Q, I220V, L234I, N254S, S255G, S283G, R284G, D288N  
46-10 46-10 None    K7R, V31I, I84L, T112I, I113V, T124A, T125A, V126F, K136Q, F139Y, D167E, V201I, T210I, K211R, I220V, L234I, S255N, S283G  
469-66 469-66 None    E11D, A21T, D41N, L101I, T112V, T124G, T125A, G134D, K136Q, D167E, I208L, K211R, L234I, K273Q, D278A, S283G  
567-16 567-16 None    A23V, V31I, D41N, M50I, I72V, T112V, I113V, T124A, T125A, G134D, K136Q, D167E, K173R, V201I, T206S, Q221T, L234I, D288N  
663-13 663-13 None    K14R, V31I, D41N, I72V, L101I, K111R, T112V, T124A, T125A, G134D, K136Q, D167E, V201I, L234I, S283G, R284G, D288N  
740-14 740-14 None    K14R, S24N, K34R, L101I, T112V, T124A, T125A, G134N, K136T, E157H, V201I, T206S, Y227F, L234I, S255N, D256E, S283G  
789-10 789-10 None    K14R, S24N, C56Y, I84M, L101I, T112V, S119P, T122I, T124A, T125A, G134N, K136T, V201I, L234I, S255N, D256E, K266R, I268L, D279G, S283G  
833-62 833-62 None    K7Q, K14R, A21T, K34R, L74M, L101I, T112V, T124A, T125A, G134N, K136T, V165I, V201I, I208L, L234I, D256E  
867-10 867-10 None   T97A E11D, K14R, S17T, V31I, V32I, K42R, L101I, T112V, T124A, T125A, G134D, K136Q, V151I, V165I, V201I, K219N, N222K, L234I, D256E, D279G  
876-14 876-14 None    I72V, I84M, T112V, I113V, T124A, T125A, G163T, V201I, L234I, K240R, A265V  
886-24 886-24 None    E11D, A21T, V31I, M50I, I72V, I84L, T112V, I113V, T125A, K136Q, D167E, V201I, K211R, Q216H, I220M, L234I, S255N, S283G  
920-49 920-49 None    K14R, V31I, I72V, L101I, T112V, T124N, G134N, K136T, S195R, V201I, T206S, T218Q, L234I, S255N, D256E, I268L, R269K, D288N M178I, V180P, F181I, I182N 
A1575 A1575 None    K14R, A21T, V31I, M50I, I60V, I84M, L101I, T112V, S119T, T124A, T125A, G134N, K136Q, D167E, T210A, L234I, S283G, R284G, D286A, D288N  
A1774 A1774 None    K14R, A21T, V31I, I72V, L101I, G106A, T112V, T124A, T125V, G134N, K136Q, D167E, L234I, D256E, V281M, S283G  
B4043-15 B4043-15 None    S17N, V31I, L101I, T124A, T125A, G134N, I135V, K136T, V165I, K173R, V201I, T218I, K219Q, L234I, D256E, S283G  
CHU2727 CHU2727 None    E11D, S17T, V31I, I72V, A91G, G106A, T112I, S119P, T124A, T125A, G134D, K136Q, D167E, T206S, D232E, L234V, N254K, S283G  
CHU3903 CHU3903 None    E11D, V31I, M50I, I72V, L101M, T112V, S119P, T124A, T125A, G134D, D167E, V201I, T206S, L234I, A265V, R269K, S283G, D286E, D288N  

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