Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Ndiaye (2013)
Title HIV type 1 subtype C remains the predominant subtype in men having sex with men in Senegal.
Citation ARHR
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 60
NumPts 60
Subtype CRF02_AG, C, B, CRF09_cpx

 

Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
MS1001 MS1001 None    I13V, G17E, K20I, M36I, R41K, I64M, H69K, K70R, L89M  
MS1005 MS1005 None    I13V, N37T, R57K, L63P, A71V, V77I, I93L  
MS1019 MS1019 None    I13V, K14R, G17GDE, K20I, M36I, R41K, H69K, K70R, V82VI, L89M  
MS1021 MS1021 None    K14R, G16E, M36I, R41K, H69K, L89M, I93L  
MS1037 MS1037 None    L19V, M36I, R41K, L63P, H69K, L89M, I93L  
MS1043 MS1043 None    I15V, G16E, L19I, M36I, R41K, L63M, H69K, I72V, I93L  
MS1044 MS1044 None    L19T, M36T, R41K, L63S, H69K, L89M, I93L  
MS1047 MS1047 None    L19I, L23X, M36I, R41K, H69K, L89M, I93L  
MS1067 MS1067 None    L19I, M36I, R41K, L63P, H69K, L89M, I93L  
MS1068 MS1068 None    M36I, R41K, H69K, K70R, L89M  
MS1072 MS1072 None    L10V, I13V, K14R, I15V, G16E, K20R, E35D, M36I, P39S, R41K, H69K, L89M  
MS1075 MS1075 None    T12S, L19I, M36I, R41K, L63P, H69K, I93L  
MS1078 MS1078 None    I13V, I15V, N37T  
MS1083 MS1083 None    L10V, I13V, G16E, L19P, K20I, E35D, M36I, R41K, H69K, K70R, I72V, L89M  
MS1088 MS1088 None    L19T, M36T, R41K, L63S, H69K, L89M, I93L  
MS1092 MS1092 None    G16E, L19I, M36MIL, N37S, L63M, H69K, I72V, L89M, I93L  
MS1100 MS1100 None    I13V, L19P, K20I, M36I, R41K, L63P, H69K, L89M, I93L  
MS1106 MS1106 None    I13V, I15V, N37T, R41K, L89M  
MS1115 MS1115 None    I13V, I15V, N37T, R41K, L89M  
MS1117 MS1117 None    I13V, G17E, K20I, M36I, R41K, I64M, H69K, K70R, L89M  
MS1118 MS1118 None    I13V, G17E, K20I, M36I, R41K, I64M, H69K, K70R, L89M  
MS1120 MS1120 None    I13V, L19P, K20I, M36I, R41K, L63P, H69K, L89M  
MS1122 MS1122 None    L10V, T12K, I13V, L19P, K20I, M36I, R41K, H69K, L89M  
MS1124 MS1124 None    T12S, G16GE, L19I, M36I, P39PS, R41K, L63X, H69K, T74TS, L89M, I93L  
MS1151 MS1151 None    I13V, L19P, K20I, M36I, R41K, L63P, H69K, L89M  
MS1152 MS1152 None    I13V, L19P, K20I, E35N, M36I, R41K, H69K, L89M  
MS1157 MS1157 None    I13V, L19P, K20I, M36I, R41K, H69K, L89M  
MS1162 MS1162 None    I13V, I15V, N37T, R41K, H69Y, L89M  
MS1165 MS1165 None    I13V, L19P, K20I, M36I, R41K, H69K, K70R, L89M  
MS1169 MS1169 None    I15V, G16E, L19I, M36I, N37S, R41K, L63M, H69K, I72V, L89M, I93L  
MS1177 MS1177 None    T12P, G16E, L19I, M36I, P39S, L63G, H69K, L89M, I93L  
MS1178 MS1178 None    T12S, L19I, M36I, R41K, L63T, H69K, T74S, L89M, I93L  
MS1179 MS1179 None    L10I, I13V, K20R, M36I, R41K, H69Q, L89M  
MS1184 MS1184 None    G16A, L19I, D25DN, M36I, R41K, L63T, H69K, L89M, I93L  
MS1186 MS1186 None    I15V, G16E, L19I, M36L, N37S, R41K, L63A, H69K, I72V, N83NS, I93L  
MS1189 MS1189 None    L10V, G16E, L19I, M36I, L63S, H69K, I72V, I93L  
MS1193 MS1193 None    T12P, G16E, L19I, M36I, N37S, L63G, H69K, L89M, I93L  
MS1196 MS1196 None    G16E, L19I, N37S, L63M, H69K, I72V, I93L  
MS1200 MS1200 None    G17D, L19I, M36I, R41K, L63P, H69K, L89M, I93L  
MS1208 MS1208 None    L19T, M36T, R41K, L63S, H69K, L89M, I93L  
MS1215 MS1215 None    I13V, K14R, K20I, M36I, R41K, I64M, H69K, L89M  
MS1225 MS1225 None    L19I, M36I, R41K, L63P, H69K, L89M, I93L  
MS1226 MS1226 None    I13V, I15V, N37T, R41K, H69Y, L89M  
MS1229 MS1229 None    I13V, G16E, L19V, K20I, M36I, Q61H, L63S, H69K, K70E, L89IM  
MS1237 MS1237 None    I13V, G17E, K20I, M36I, R41K, I64M, H69K, K70R, L89M  
MS1248 MS1248 None    I13V, G17E, K20I, M36I, R41K, I64M, H69K, K70R, L89M  
MS1259 MS1259 None    T12S, L19I, M36I, R41K, L63T, H69K, T74S, L89M, I93L  
MS1268 MS1268 None    L10I, I13V, K20R, M36I, R41K, L63M, H69Q, L89M  
MS1289 MS1289 None    L10LV, I13V, G16GE, L19P, K20I, M36I, R41K, H69K, K70R, I72V, L89M  
MS1292 MS1292 None    I13V, L19P, K20I, M36I, R41K, H69K, L89M  
MS1296 MS1296 None    T12A, I13V, K20I, M36I, R41K, L63P, H69K, L89M  
MS1302 MS1302 None    N37T, I62V, L63P, I72E, V77I, I93L  
MS2016 MS2016 None    R41RK, I62IV, I93L  
MS2054 MS2054 None    I13V, G16E, L19V, K20I, M36I, L63HP, H69K, K70KE, L89I  
MS3007 MS3007 None    I15V, G16E, L19I, M36I, N37S, R41K, L63M, H69K, I72V, L89M, I93L  
MS3022 MS3022 None    L10V, I13V, K14R, I15V, G16GE, L19LP, K20IR, E35D, M36I, P39PS, R41K, H69K, L89M  
MS4017 MS4017 None    L10I, I13V, K14R, K20R, M36I, R41K, H69Q, L89M  
MS4026 MS4026 None   G73S L10V, I13V, G16E, L19P, K20I, E35D, M36I, N37S, R41K, L63H, H69K, K70R, I72V, L89M  
MS4040 MS4040 None    L10V, I13V, G16E, L19P, K20I, E35D, M36I, N37S, R41K, H69K, K70R, I72V, L89M  
MS4077 MS4077 None    L10V, I13V, G16E, L19P, K20I, E35D, M36I, N37NS, R41K, H69K, K70R, I72V, L89M