Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Leigh Brown (2011)
Title Transmission network parameters estimated from HIV sequences for a nationwide epidemic.
Citation J Infect Dis
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 1288
NumPts 1288
Subtype B, CRF29_BF

 
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Page 1   listing Isolate 1 to Isolate 100 from Total 1288 Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
100243 100243 Unknown Unknown   V35M, R83K, K101R, D123E, S162SC, E169D, T200I, Q207X, R211K, A272P, T286A, K311R, I329L  
66145 66145 Unknown Unknown K70KR  V35I, R83K, D123E, I135IV, K166KR, D177DN, T200TA, R211K, V245VL, A272P, K281R, I293IV, E297K, Q334L, I341F  
66598 66598 Unknown Unknown   K104N, I135T, R211K, F214L  
67527 67527 Unknown Unknown   K11KR, K20R, I135T, S162C, R211K, V245EK, E248ED, A272P, I326MV, Q334D, A360T, K366R, K395KR  
67634 67634 Unknown Unknown A62V, V75I, M184V Y188L P4S, K122E, S162C, K173R, Q174R, I178M, Q207E, R211K  
67681 67681 Unknown Unknown   K20R, V35M, T39A, A98S, I135T, S162D, K166R, R211K, V245M, T286A, T296S, E297K, I326T, I329L, Q334E, G335D, P345Q, F346Y, M357T  
67915 67915 Unknown Unknown   S162C, Q207E, R211K, F214FL, A288S, Q334L, G359GS, A376S, K390R, A400AT  
67963 67963 Unknown Unknown A62V, D67N, K70R, M184V, T215Y G190A K104N, D123E, I135T, R211K  
69382 69382 Unknown Unknown   K104R, I135T, R211K, F214FL, A272PS, K277KR, E291ED, V292VI, I293IV, D320DE, A327AV, I329IV, G333GE, T386I, K388KR, K390R, A400T  
69496 69496 Unknown Unknown D67N, K70R, T215Y, K219E A98G, K103N, V106I, Y181C, G190A V60VI, D123E, D177E, T200I, L228H  
70066 70066 Unknown Unknown   K20R, V35I, S68G, A98S, K122N, D177DE, I178IM, G196E, T200I, R211G, A272P, K277KR, K311R  
71424 71424 Unknown Unknown   K20R, V35L, K122E, T165I, I202V, F214L, T286A, A288S, E297K  
71493 71493 Unknown Unknown   K20R, S48T, D123E, R211K  
71730 71730 Unknown Unknown   K49R, V60I, D123E, I135T, I178M, Q207QK, A272G, I293V, S322T  
71775 71775 Unknown Unknown   T39A, D123E, I135L, S162C, D177E, I178IV  
71901 71901 Unknown Unknown   K122E, D177E, R211RK, V245E, A272P, K277R, M357T, T377X, S379G, K390KR  
72060 72060 Unknown Unknown M41L, L210W, T215Y  V35T, V60I, K122E, I135V, A158S, V179VI, Q197P, H208HY, R211K  
72893 72893 Unknown Unknown M184V  I142V, T200TA, Q207QE, R211K, T286TA, S322T, A327V, A360AV, A376T, S379C, K390R  
72979 72979 Unknown Unknown M41L, D67N, L74LI, M184I, L210W, T215D E138EQ, Y181C, G190A K20R, V90VI, K101N, K122E, S162C, T200A, R211K  
73160 73160 Unknown Unknown   V35T, T39A, R83K, I142IV, A272P, K277R, T286A, I293V, E297K, S322T, Q334L  
73687 73687 Unknown Unknown   D123E, I142X, S162A, Q174H, I202V, R211K  
74580 74580 Unknown Unknown   A98S, D123E, I135T, A158S, I180V, R211A, V245T, A272P, K277R, E297K, D324E, I329L, K366R, I380V, V381I  
74917 74917 Unknown Unknown  G190S V35VI, E44D, E53D, V75VL, K104R, I178M, G196GR  
75045 75045 Unknown Unknown  K103N E6T, K122E, I135V, S162C, T200E, Q207HN, R211K, V245R, A272P, V317A, Q334L  
75197 75197 Unknown Unknown   V118I, D123N, I135T, T165I, E169ED, Q174H, R211K, F214L, A272P, T286A, K311R  
75298 75298 Unknown Unknown   S68G, A98S, D121Y, K122E, K166R, K173E, P176K, T200E, R211K, L228S, K277R, T286A, P294T, M357T, V381I, K385R, K390R, A400T  
75362 75362 Unknown Unknown   V35I, W88C, K122E, D123N, I135T, E169D, D177E, I178V, G196E, T200I, F214L, A272S, I293V, I326L  
75435 75435 Unknown Unknown   I135V, S162C, R211K, V245E, K277R, T286TA  
75803 75803 Unknown Unknown K70R  I178IM, T200A, R211KN, V245E, K281R, A376T, T386I, A400T  
76467 76467 Unknown Unknown   K122KE, R211K, V245M, K249Q, A272P, I293V, P294T, E297A, Q367L, I375V, A376T, S379C, V381I, T386I, K388R, K390R, A400T L209LP 
76475 76475 Unknown Unknown   V21I, D123E, I135V, E169D, K173D, Q174K, D177E, V179I, D218E T84TA 
77183 77183 Unknown Unknown  K103N, P225H V60I, D123E, I142T, D177E, I178M, R211K, E224K, A272P, K277R, A288S, G333D, Q334Y, P345S  
77301 77301 Unknown Unknown   E169D, D177DE, G196GE, T200TA, R211X, F214L, V245T, K277KR, I293V  
77844 77844 Unknown Unknown K65KR K103N S68SN, D121H, K122E, Q174H, D177E, T200A  
77900 77900 Unknown Unknown   A98S, K102Q, K122E, D123N, E169D, D177E, R211K  
79267 79267 Unknown Unknown   V35T, S162C, G196E, L210M, R211K  
79908 79908 Unknown Unknown   T69S, I135M, I142IV, S162CY, V179VI, T200S, R211G  
80117 80117 Unknown Unknown  K103N V60I, I142T, D177E, I178M, S191SF, T200TR  
80330 80330 Unknown Unknown   E6D, E42EK, S163T, K166R, I178M  
80597 80597 Unknown Unknown   K20KR, K49KR, K102Q, S162X, K166KI, R211RK, K311KR, S322A, A376ST, K390R, A400S  
80893 80893 Unknown Unknown D67N, K70R, T215F, K219Q K103N, Y181C V8I, K49R, I50V, V60I, R83K, D123E, T200A, Q207E, D218E  
81368 81368 Unknown Unknown   V35VI, D121H, K122E, D177E, I178IM, V179C, Q197E, T200A, Q207E  
81605 81605 Unknown Unknown   K122E, D123N, I142V  
82211 82211 Unknown Unknown   K122A, I135T, K166R, T200A, R211Q, F214L, V245M, A272P, K277R, A288S, I293V, E297K, A304E, S322T, G359S, A376V, V381I, A400T  
82679 82679 Unknown Unknown  V108VI A98AS, D121DY, K122KE, D123DE, S162AG, K166KR, D177E, T200A, R211K, A272AP, K277R, L283I, I293V, I329L, M357T, A400T  
82899 82899 Unknown Unknown   V35I, K102KR, I132IV, I135M, I142IS, K173T, R211RK, A272P, K277R, I293V, G335D, G359S, V365I, A376T, T386I, E399ED, A400T  
83555 83555 Unknown Unknown   D123E, I135T, G196E, I202V, R211Q, V245I, A272P, K277R, L283I, I293V, P294T, E297R, D320E, I326V, Q334L D177T 
84248 84248 Unknown Unknown   S162A, Q207E, R211K, K277R, E291D, I293V, E297R, E312K, I326V, G333E, Q334L  
84435 84435 Unknown Unknown   K122E, D123E, S162C, Q207E, K281R, E291ED  
84479 84479 Unknown Unknown   R83K, D123N, S162HY, D177DE, V179VI, R211K, K277R, I293IV, K366R, A371V, A400T  
84870 84870 Unknown Unknown   R83K, K102Q, K103R, V245E, K277R, I293IV, S379G, T386TI, K390R, A400AT  
84989 84989 Unknown Unknown   V118I, I135T, K173A, Q174K, T200A, F214L  
85080 85080 Unknown Unknown   V35M, V60I, R83K, I135V, S162C, I178L, G196E, Q207E, R211K  
85391 85391 Unknown Unknown   E6D, I50IV, I142V, R211RK, A272P, L283I, I293V, K311R  
86988 86988 Unknown Unknown M184V, T215S  S48T, D121H, K122E, K166R, D177E, V245E, V292I, I293V  
87483 87483 Unknown Unknown   K20R, V35I, K122E, D123S, Q174QK, Q207H, R211K, V245EQ, I329L  
88033 88033 Unknown Unknown   E194ED, T200E, R211K, V245I, A272P, K277R, A327V, R358K, A376S, K390R  
88278 88278 Unknown Unknown   V35I, E40Q, K104R, D121Y, K122E, D123E, I135T, S162C, G196E, R211K N54Y 
88693 88693 Unknown Unknown L74LV  K11S, K22R, V35VI, K122E, D123E, I178IM, T200E, E204V, Q207E, R211K  
88882 88882 Unknown Unknown M41L, D67N, T69D, M184V, L210W, T215Y H221HY E44D, V118I, K122KE, I135T, S162D, E203D, Q207E, H208Y, R211K, K277R, R284K, I293V, E297EQ  
88997 88997 Unknown Unknown D67N, T215C, K219E  K20R, V35M, T39S, V60I, I135L, S162C, D177E, L193LF, R211K, V245VM, I293V, I329V, A360T, A376IT, T377TIM, K385KR, K390R, A400T  
89286 89286 Unknown Unknown M41L, M184MV, L210W, T215Y  T39A, K122KE, I142V, I178M, I195L, R211K, K277R, I326V, R356RK, A371AV, A400T  
89368 89368 Unknown Unknown K65R, M184V  S68N, K122KE, E169D, R211K, V245Q, K277R, I293V, I326M, Q334C  
89531 89531 Unknown Unknown   K122KE, I135T, S162C, D177E, I178IM, Q207E, A272P, K277R, T286TA, I293V, E297K, V317A, D324DE, Q334L, T338TS, K350R, A360AT, I375V, K390R  
89612 89612 Unknown Unknown   K20R, K122E, A158S, S162C, I178L, R211K  
89726 89726 Unknown Unknown   V90VI, A98S, D123E, A158S, S162A, Q174QH, R211K  
89883 89883 Unknown Unknown   K20R, V35I, D86E, D123N, V179VA, I202V, R211K  
89884 89884 Unknown Unknown D67DN, K70KR  D86DE, A98S, V118VI, D123E, I135T, K166R, R211S, F214L  
90053 90053 Unknown Unknown   R78K, I135T, G196E, Q207H, R211K  
90600 90600 Unknown Unknown   I142V, I159V, Q207E, A272P, K277R, A288S, I293V, E297T  
90607 90607 Unknown Unknown   K11R, K20R, V60I, K122KE, D123X, I135T, I178M, A272P, E297K, L301I, K311R, F346Y, K390R, A400I  
91074 91074 Unknown Unknown   K49R, K104R, D123E, S162C, G196E, K277R, T286A, G335S, K390R, E399D, A400T  
91251 91251 Unknown Unknown   R83K, S162Y, T200A, Q207E, R211K, K277R, I293V, T338S, M357T, K366R, T386I, A400T  
91315 91315 Unknown Unknown   I31V, S68G, V90I, K122P, S162C, D177E, V179I, T200A, R211K, K277R, T286A, I326V, V365I, A376S  
91606 91606 Unknown Unknown   K20R, V60I, K166R, N175H, I178M, D192DN, T200E, Q207N, R211K, A272P, I293V, V317A, Q334L, Y342F, M357T, R358K, K366R, A376T, T377Q, E399D, A400T  
91796 91796 Unknown Unknown   E6ED, K11KR, V35T, K122E, I135T, I142V, K166R, G196E, I202V, R211K  
92178 92178 Unknown Unknown   A98S, K102Q, K122E, D123N, E169D, R211K  
92711 92711 Unknown Unknown   K20R, V35I, I135T, G196E, E204EQ, Q207X, R211RK  
92932 92932 Unknown Unknown   V90I, D123E, I135T, I142V, D177E, I180V  
93125 93125 Unknown Unknown M184I K101E, G190A D67A, I180L, Q207E, R211K, V245M, K277R, I293V, P294A, Q334L  
93254 93254 Unknown Unknown  K103KN E6EK, K20R, K122E, I202IV, T286A, A288S, E297K, G333E, Q334H, M357T, T369A, A376T, K390R, A400I  
93301 93301 Unknown Unknown   D121Y, K122E, S162C, G196E, Q197K, W212WG, V245T, K277R, T286A, E297K, Q334E, R356K, K390R  
93448 93448 Unknown Unknown M184V K103N D123E, I135T, Y144F, I178M  
93758 93758 Unknown Unknown   D123E, I142V, K166R, E204D, R211K  
93775 93775 Unknown Unknown   S162C, R211K, E224D, V276VI, I293V, K311R, I326V, Q334QL  
93922 93922 Unknown Unknown   E6D, V8I, V35I, K49KR, D123E, I135T, D177E, T200I, R211K, K277R, R284K, I293V, E297K, I326V, Q334L  
94566 94566 Unknown Unknown  V179D V118VI, K122KQ, D123X, I135T, K166KR, G196GE, T200A, I202V, F214L, V245M, A272P, K277R, A288S, I293V, P294A, I329L  
95238 95238 Unknown Unknown   Q207E, R211K, V245M, K277R, T286A, E297A, I326V, I329V  
95328 95328 Unknown Unknown M41L, D67N, L74V, V75T, M184MV, T215Y, K219E L100I, K103N K20R, D123E, I142V, V179I, G196E, T200I, E224D  
95401 95401 Unknown Unknown   I31V, S68G, V90I, K122P, S162C, D177E, V179I, T200A, R211K, K277R, T286A, I326V  
95495 95495 Unknown Unknown   K20R, K122E, D123S, I135T, T165I, R211K, V245K, A272P, K277R, P294S, I329L  
96102 96102 Unknown Unknown  V108VI I31IV, S68G, V90I, K122P, S162C, D177E, V179I, T200A, R211K, K277R, T286A  
96329 96329 Unknown Unknown   T27S, V35M, R83K, D123E, A272P, K277R, K281R, I293V, E297K, S322SL, A327AV, A376V, S379C, A400T  
96400 96400 Unknown Unknown   K20R, A158S, D177E, G196E, R211G, V245K, A288S, I293V, I326V, Q367L  
96744 96744 Unknown Unknown  E138EA V60I, K122E, D123S, I135IM, I142V, S162Y, Q197QK, R211K, A272P, K277R, T286P, I293V, E297K, P321S, S322T, M357I, A360T, T397TI, A400T F116FL 
96974 96974 Unknown Unknown   K20KR, V60VI, K101KR, I135IM, A158AS, E169D, V179VI, Q197QE, T200TA, R211RK  
97934 97934 Unknown Unknown   K122E, I135T, I202V, F214L, I293V, A327V, T386I, A400I  
98260 98260 Unknown Unknown M184V  V35I, A158S, Q207N, R211K, A272S, R284K, V292I, I293V, K311R, V317A, S322T  
98418 98418 Unknown Unknown   I50V, A158S, S162C, R211K, V245M, E248D, K275KQ, V276VI, K277KR, E297A, K311R  
98617 98617 Unknown Unknown   K32KR, R83K, K122KE, S162C, E169D, G196E, Q207QKR, R211AV, T286A, I293IV, E297K, K311R, S322ST, T377I, K390R, A400T  

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