Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Hunt (2019)
Title Provincial and national prevalence estimates of transmitted HIV-1 drug resistance in South Africa measured using two WHO-recommended methods.
Citation Antivir Ther
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 979
NumPts 979
Subtype C, A, B, D

 
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Page 1   listing Isolate 1 to Isolate 100 from Total 979 Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
OFS2012_3654027 OFS2012_3654027 None    L10I, T12TS, I15V, L19T, M36I, R41K, L63S, H69K, T74A, L89M, I93L  
OFS2012_3654075 OFS2012_3654075 None    T12S, I15V, L19V, E35D, N37S, R41K, L63P, H69K, V82I, L89M, I93L  
OFS2012_3654091 OFS2012_3654091 None    T12S, I15V, L19V, K20R, E35D, M36I, R41K, H69K, L89M, I93L  
OFS2012_3656500 OFS2012_3656500 None    T12S, I15V, L19I, K20R, M36I, P39S, R41K, H69K, T74TS, L89M, I93L  
OFS2012_3659162 OFS2012_3659162 None    T12S, I15V, L19I, M36I, R41K, H69K, T74S, L89M, I93L  
OFS2012_3659202 OFS2012_3659202 None    I15V, L19T, M36I, R41K, K43R, L63H, H69K, L89M, I93L  
OFS2012_3659244 OFS2012_3659244 None    T12S, I15V, L19T, R41K, R57K, L63P, H69K, V77I, L89M, I93L  
OFS2012_3659339 OFS2012_3659339 None    T12S, K14R, I15V, G17D, L19T, K20M, N37S, L63T, H69K, L89M, I93L  
OFS2012_3662305 OFS2012_3662305 None    T12S, K14KR, I15V, L19I, M36I, R41K, L63X, H69KQ, V77VI, L89M, I93L G16AT 
OFS2012_3665580 OFS2012_3665580 None    T12S, L19I, E35D, M36I, R41RK, D60E, L63P, H69K, V82I, L89M, I93L  
OFS2012_3665585 OFS2012_3665585 None    T12S, I15V, L19I, K20R, M36I, R41K, L63T, H69K, V77I, V82I, L89I  
OFS2012_3665632 OFS2012_3665632 None    T12P, L19I, E35D, M36I, R41K, L63P, H69K, T74S, L89M, I93L  
OFS2012_3665681 OFS2012_3665681 None    T12S, I15V, Q18E, L19T, K20R, E35D, M36I, R41K, H69K, L89M, I93L  
OFS2012_3665682 OFS2012_3665682 None    T12TA, K14KT, I15V, G17D, L19T, K20R, E35D, M36I, K45R, R57K, L63S, H69K, L89M, I93L  
OFS2012_3665700 OFS2012_3665700 None    T12S, I15IV, L19IT, K20KR, M36I, R41K, L63X, I64IV, H69K, L89LM, I93L  
OFS2012_3665709 OFS2012_3665709 None    L19V, E35D, M36I, R41K, L63PS, H69K, I93L  
OFS2012_3665721 OFS2012_3665721 None    T12PS, I15IV, L19I, K20R, E35D, M36I, N37D, R41K, H69K, T74S, L89M, I93L  
OFS2012_3668177 OFS2012_3668177 None    T12S, L19I, E35D, M36I, R41K, L63AV, H69K, L89M, I93L  
OFS2012_3668183 OFS2012_3668183 None    T12S, I15V, L19PT, M36I, R41K, Q61E, L63P, H69K, V77I, V82I, L89M, I93L  
OFS2012_3668257 OFS2012_3668257 None    T12S, I15V, L19I, M36I, R41K, L63V, H69K, T74S, L89M, I93L  
OFS2012_3670510 OFS2012_3670510 None    T12S, L19IT, N37S, Y59YF, L63PS, H69K, V77I, L89M, I93L  
OFS2012_3670519 OFS2012_3670519 None    T12S, I15V, L19T, K20R, E21K, M36I, R41K, L63P, H69K, V77I, L89M, I93L  
OFS2012_3675846 OFS2012_3675846 None    T12S, I15V, L19I, K20R, E35D, M36I, R41K, H69K, L89M, I93L  
OFS2012_3678933 OFS2012_3678933 None    I15V, L19IT, E35D, M36I, R41K, H69K, A71AV, L89M, I93L  
OFS2012_3678963 OFS2012_3678963 None    T12S, L19I, M36I, L63P, H69K, T74A, L89M, I93L  
OFS2012_3678968 OFS2012_3678968 None    T12S, I15V, L19I, K20R, M36MIL, N37E, L63P, H69K, V77I, V82I, L89M, I93L  
OFS2012_3678989 OFS2012_3678989 None    L10V, I15V, L19T, K20R, E35D, M36I, R41K, H69K, T74S, L89M, I93L G86GR 
OFS2012_3679046 OFS2012_3679046 None    T12S, I15V, Q18L, L19T, K20R, E35ED, M36I, R41K, Q61N, G68GE, H69K, I72IT, V75VI, L89M, I93L, F99FL  
OFS2012_3681001 OFS2012_3681001 None    T12S, I15V, L19T, K20R, E35ED, N37NT, R41K, L63T, H69R, V77I, L89M, I93L  
OFS2012_3681003 OFS2012_3681003 None    T12S, L19I, K20R, E35D, M36I, R41K, L63C, H69K, I72M, L89M, I93L  
OFS2012_3681019 OFS2012_3681019 None    T12S, I15V, L19T, K20R, E35D, M36I, R41K, D60E, L63T, H69K, L89M, I93L, L97I  
OFS2012_3685790 OFS2012_3685790 None    T12S, L19I, M36L, N37S, R41K, L63P, H69K, V77I, L89M, I93L  
OFS2012_3691049 OFS2012_3691049 None    T12S, G16GE, L19I, M36I, R41K, K45R, L63P, H69K, L89M, I93L  
OFS2012_3691065 OFS2012_3691065 None    T12S, L19I, K20R, M36I, R41K, H69K, L89M, I93L  
OFS2012_3698412 OFS2012_3698412 None    L19I, M36L, N37Y, R41K, L63P, H69K, L89M, I93L  
OFS2012_3703242 OFS2012_3703242 None    L10LI, R41K, H69K, T74A, L89M, I93L  
OFS2012_3718557 OFS2012_3718557 None    T12S, I15V, L19I, M36I, R41K, H69K, T74S, L89M, I93L  
WC2011_07035 WC2011_07035 None    T12S, I15V, L19I, M36L, R41K, D60E, H69K, L89M, I93L  
WC2011_07104 WC2011_07104 None    T12S, I15V, Q18E, L19I, K20R, E35D, M36I, R41K, K43KR, L63S, H69K, L89M, I93L  
WC2011_07169 WC2011_07169 None    T12P, I15V, L19T, K20R, E35D, M36I, R41K, D60E, Q61E, I62V, L63T, H69K, V82I, L89M, I93L  
WC2011_07429 WC2011_07429 None    T12S, I15V, L19I, M36I, R41K, Q61H, L63IV, H69K, V82I, L89M, I93L  
WC2011_07435 WC2011_07435 None    T12S, I15V, L19V, M36I, N37D, H69K, K70R, L89M, I93L  
WC2011_07437 WC2011_07437 None    T12S, I15V, L19I, M36I, R41K, L63HQ, H69K, I93L, L97LI  
WC2011_07715 WC2011_07715 None    T12P, I15V, L19I, E35D, M36I, R41K, L63P, H69K, T74S, L89M, I93L  
WC2011_07747 WC2011_07747 None    T12S, I15V, L19I, N37S, R41K, L63S, H69K, L89M, I93L  
WC2011_07748 WC2011_07748 None    T12S, L19T, M36I, H69K, L89M, I93L  
WC2011_07875 WC2011_07875 None    T12S, K14T, G16E, L19V, E35D, N37K, R41K, Q61E, H69K, L89M, I93L  
WC2011_07894 WC2011_07894 None    T12TA, I13IV, I15IV, Q18QK, N37E, L63Q, I64V, V77VI  
WC2011_07907 WC2011_07907 None    L10V, I13V, G16E, K20R, M36I, R41K, D60E, H69K, L89M, I93L  
WC2011_07910 WC2011_07910 None    L19T, E35D, M36I, P39T, R41K, Q61E, I62V, L63T, H69K, T74S, L89M, I93L  
WC2011_07918 WC2011_07918 None    T12E, I15V, L19I, M36I, R41K, G48GE, D60E, H69K, L89M, I93L  
WC2011_07982 WC2011_07982 None    T12S, K14N, L19I, M36I, R41K, L63P, H69K, L89M, I93L  
WC2011_08057 WC2011_08057 None    T12S, I15IV, G16GA, L19I, M36I, N37NS, R41RK, D60DE, L63LP, H69K, L89M, I93L  
WC2011_08077 WC2011_08077 None    T12S, I15V, L19T, E35D, M36I, R41K, K45R, L63V, H69K, V82I, L89LM, I93L  
WC2011_08151 WC2011_08151 None    I13V, M36I, R41K, I62V, H69K, L89M  
WC2011_08186 WC2011_08186 None    T12S, I15V, L19T, E35D, M36I, R41K, L63V, H69K, T74S, L89M, I93L  
WC2011_08191 WC2011_08191 None    L5LF, T12S, L19T, E35D, M36I, R41RK, L63AT, H69K, K70KR, V77I, V82I, L89M, I93L  
WC2011_08285 WC2011_08285 None    I15V, L19T, E34EG, E35ED, M36I, R41K, K43R, L63P, H69K, I93L  
WC2011_08306 WC2011_08306 None   Q58E T12S, I15V, G16E, L19I, E35D, M36I, R41K, D60E, Q61E, H69K, I72R, V82I, L89M, I93L  
WC2011_08532 WC2011_08532 None    T12S, I15V, L19I, E35D, N37T, R41K, D60E, L63P, H69K, V77I, L89M, I93L  
WC2011_08602 WC2011_08602 None    T12P, I15V, L19I, K20R, E35D, M36I, R41K, K45R, L63V, H69K, T74S, L89M, I93L  
WC2011_08630 WC2011_08630 None    T12S, L19I, M36I, R41K, K45KR, D60E, L63S, H69K, L89M, I93L  
WC2011_09021 WC2011_09021 None    T12A, L19I, M36I, R41K, L63PS, H69K, L89M, I93L  
WC2011_09025 WC2011_09025 None    K14N, L19I, M36I, R41K, K45KR, D60E, L63P, H69K, L89I, I93L  
WC2011_09030 WC2011_09030 None    L19T, K20R, E35D, N37T, R41K, Q61D, L63V, H69K, T74S, V77I, L89M, I93L  
WC2011_09033 WC2011_09033 None    T12S, I15V, L19I, M36I, R41K, Q61H, H69K, L89M, I93L  
WC2011_09040 WC2011_09040 None    I15V, G16E, L19I, K20R, M36I, P39Q, R41RK, H69K, L89M, I93L  
WC2011_09046 WC2011_09046 None    T12S, I15V, G16E, L19IV, M36I, R41K, D60E, L63N, H69K, L89I, I93L  
WC2011_09072 WC2011_09072 None    T12S, I15V, L19I, M36I, N37A, L63I, I66V, H69K, L89M, I93L  
WC2011_09118 WC2011_09118 None    T12S, I15V, L19I, E35ED, M36I, R41K, D60E, Q61E, H69K, L89M, I93L  
WC2011_09134 WC2011_09134 None    T12S, I15V, G16E, L19I, E35D, M36I, R41K, K45KR, D60E, H69K, L89M, I93L  
WC2011_09143 WC2011_09143 None    T12S, I15V, L19I, K20R, E35D, M36I, R41K, L63T, H69K, T74S, L89M, I93L  
WC2011_09149 WC2011_09149 None    T12S, K14R, I15V, G16E, Q18K, L19T, K20M, M36I, R41K, L63H, H69K, L89M, I93L  
WC2011_09154 WC2011_09154 None    T12S, L19I, K20R, E35D, M36I, R41K, R57K, L63H, H69K, L89M  
WC2011_09167 WC2011_09167 None    T12S, K14R, I15V, G16E, L19I, E35D, M36I, R41K, D60E, H69K, L89M, I93L  
WC2011_09208 WC2011_09208 None    Q7QE, I15V, L19I, M36I, R41K, K45R, L63LF, H69K, L89M, I93L  
WC2011_09231 WC2011_09231 None    Q18E, L19IM, M36I, N37T, R41RK, L63T, H69K, L89M, I93L  
WC2011_09233 WC2011_09233 None    I15V, L19I, M36I, R41K, R57K, L63A, H69K, I93L  
WC2011_09247 WC2011_09247 None    T12S, I15V, L19I, K20R, E35D, M36I, R41K, L63S, H69K, L89M, I93L  
WC2011_09332 WC2011_09332 None    I13V, I15V, L19T, K20R, M36I, R41K, Q61E, L63V, E65D, H69K, L89M, I93L  
WC2011_09349 WC2011_09349 None    T12S, I15V, L19I, E35D, M36I, R41K, D60E, Q61D, L63S, H69K, L89M, I93L  
WC2011_09422 WC2011_09422 None    T12S, I15V, L19I, K20R, E35D, M36I, N37D, R41K, R57K, D60E, L63I, H69K, L89M, I93L  
WC2011_09424 WC2011_09424 None    T12S, I15V, L19I, K20R, M36I, R41K, H69K, L89M, I93L  
WC2011_09458 WC2011_09458 None    T12S, I15V, L19I, M36T, R41K, L63P, H69K, L89M, I93L  
WC2011_09459 WC2011_09459 None    I15V, L19T, E35D, M36I, P39T, R41K, D60E, L63P, H69K, L89M, I93L  
WC2011_09472 WC2011_09472 None    T12S, L19T, E35D, M36L, R41K, D60E, Q61E, L63P, I64V, H69K, A71T, I93L  
WC2011_09544 WC2011_09544 None    T12S, K14E, I15V, L19I, M36I, R41K, L63C, E65Q, H69K, L89M, I93L  
WC2011_09549 WC2011_09549 None    T12S, I15V, L19I, E35D, M36I, R41K, L63T, H69K, T74S, L89M, I93L  
WC2011_09646 WC2011_09646 None    T12S, I15V, L19I, N37S, R41K, L63V, H69K, I72IMV, T74S, V77I, L89M, I93L  
WC2011_09659 WC2011_09659 None    I15V, L19T, K20R, M36I, R41K, H69KN, L89M, I93L  
WC2011_09711 WC2011_09711 None    T12S, L19I, M36I, R41K, K45KR, H69K, L89M, I93L  
WC2011_09712 WC2011_09712 None    T12S, I15V, L19T, K20R, M36I, P39PQ, R41K, L63T, H69K, V82VI, L89M, I93L  
WC2011_09734 WC2011_09734 None    T12S, I15V, L19I, K20R, M36I, R41K, H69K, V77I, L89M, I93L  
WC2011_09737 WC2011_09737 None    T12S, I15V, L19T, K20R, L63S, H69K, V77I, L89M, I93L  
WC2011_09742 WC2011_09742 None    T12S, L19I, M36L, N37S, R41K, L63P, H69K, L89M, I93L  
WC2011_09754 WC2011_09754 None    T12S, I15V, L19I, K20R, M36I, L63P, H69K, V77I, V82I, L89M, I93L  
WC2011_09963 WC2011_09963 None    T12A, I15V, L19T, M36I, R41K, H69K, L89M, I93L  
WC2011_10107 WC2011_10107 None    T12S, I15V, L19I, E35D, M36I, R41K, K45R, L63V, I64L, H69K, L89M  
WC2011_10350 WC2011_10350 None    T12A, I15V, L19I, M36I, N37D, R41K, L63P, H69K, L89M, I93L  
WC2011_10404 WC2011_10404 None    I15V, L19T, M36I, R41K, H69K, I72IT, L89M, I93L  

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