Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Jacobs (2014)
Title HIV-1 subtypes B and C unique recombinant forms (URFs) and transmitted drug resistance identified in the Western Cape Province, South Africa.
Citation PLoS ONE
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 52
NumPts 52
Subtype C, B

 

Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
AQ123-10 AQ123-10 Unknown    T12S, K14R, I15V, G16E, L19V, M36I, N37S, R41K, H69K, L89M, I93L  
AS052-09 AS052-09 None    E35D, N37Q, R41K, L63P, V77I  
AZ111-10 AZ111-10 None    T12S, I15V, L19V, M36I, R41K, H69K, L89M, I93L  
BL115-10 BL115-10 None    T12S, L19I, E35D, M36I, R41K, K45R, L63P, H69K, L89M, I93L  
BM028-08 BM028-08 None    T12S, I15V, G16E, L19I, M36I, R41K, H69K, L89M, I93L N83F 
BM072-09 BM072-09 None    L10V, T12N, L19T, M36I, R41K, L63V, H69K, L89M, I93L  
BS139-10 BS139-10 None    L19T, K20R, M36I, R41K, L63T, H69K, L89M, I93L  
CD007-08 CD007-08 None    T12PS, I15IV, L19IV, K20KR, E35D, M36I, R41K, K45R, R57K, Q61E, H69K, L89M, I93L  
CM103-09 CM103-09 None    G16E, L19I, E35D, R41K, H69K, V77I, L89M, I93L  
CS006-08 CS006-08 None    T12S, I15V, L19V, E35D, M36I, R41K, K45R, H69K, L89M, I93L  
EF031-08 EF031-08 None    T12P, I15V, G16E, L19T, K20R, E35D, M36I, P39Q, R41K, H69K, L89M, I93L  
FG023-08 FG023-08 None    T12P, I15V, G16E, L19I, N37S, L63H, H69K, V77I, I93L  
GN041-09 GN041-09 Unknown    L5F, T12S, I15V, L19V, M36L, R41K, L63H, H69K, L89M, I93L  
HN113-10 HN113-10 None  V82F  L19T, K20R, M36I, R41K, L63V, H69K, N83S, L89M, I93F I84L 
JK047-09 JK047-09 Unknown    T12S, K14R, I15V, L19V, M36I, N37S, R41K, H69K, L89M, I93L  
LM081-09 LM081-09 None    T12S, I15V, L19T, M36I, R41K, L63P, H69K, T74S, L89M, I93L  
LN135-10 LN135-10 Unknown    T12S, I15V, L19I, K20R, E35N, M36I, N37D, R41K, D60E, Q61E, H69K, L89M, I93L  
MD045-09 MD045-09 Unknown    T12S, I15V, L19I, K20R, E35D, M36I, R41K, H69K, L89M, I93L  
MH020-08 MH020-08 None    I13V, L19M, K20R, M36I, R41K, L63P, H69K, I93L  
MN019-08 MN019-08 None    T12S, I15V, L19I, K20R, M36I, P39S, R41K, D60E, Q61E, L63P, H69K, V77I, L89M, I93L  
MN091-09 MN091-09 None    T12S, I15V, L19I, K20KR, E35D, M36MI, N37KQ, R41K, L63P, H69K, V77I  
MT100-09 MT100-09 None    T12S, L19I, M36I, N37S, R41K, L63T, H69K, L89M, I93L  
ND021-08 ND021-08 None    T12S, I15V, L19I, K20R, E35D, M36I, R41K, H69K, L89M, I93L  
NJ039-09 NJ039-09 Unknown   K43T T12S, I15V, L19I, E35D, M36I, R41K, D60E, L63P, H69K, I93L  
NM013-08 NM013-08 None    T12S, I15V, L19I, K20R, E35D, M36I, R41K, H69K, L89M, I93L  
NM082-09 NM082-09 None    K20R, M36I, R41K, H69K, L89M, I93L I85N 
NM114-10 NM114-10 None    T12S, I15V, L19I, M36I, N37S, R41K, L63P, I64L, H69K, K70R, L89M, I93L  
NN087-09 NN087-09 None    T12S, I15V, L19I, K20R, E35D, M36I, R41K, L63S, H69K, T74S, L89M, I93L  
NN117-10 NN117-10 None    T12S, I15V, L19T, M36I, R41K, L63P, H69K, T74S, L89M, I93L  
NN140-10 NN140-10 None    I15V, L19I, M36I, R41K, L63S, H69K, L89I N83Y 
NP048-09 NP048-09 Unknown    E35D, R41K, H69K, V77I, L89M, I93L  
NS118-10 NS118-10 Unknown    T12S, L19T, K20R, M36I, R41K, L63T, H69K, I72V, I93L  
NS121-10 NS121-10 Unknown    T12S, I15V, L19I, M36I, N37S, R41K, L63P, I64L, H69K, L89M, I93L  
PK116-10 PK116-10 None    L10V, T12S, I15V, L19I, M36I, R41K, H69K, L89M, I93L  
PM004-08 PM004-08 None    T12S, I15V, L19T, M36I, R41K, L63S, H69K, I93L  
PM014-08 PM014-08 None    E35D, N37Q, R41K, L63P, V77I G78E, G86K 
PT049-09 PT049-09 None    I15V, M36I, R41K, D60E, H69K, L89M, I93L  
RG084-09 RG084-09 None    T12S, I15V, L19T, M36I, D60N, Q61G, I62V, L63P, H69R, V77I, L89M, I93L R41Q 
SB067-09 SB067-09 None    T12S, I15V, L19I, M36I, R41K, D60E, H69K, L89M, I93L  
SM024-08 SM024-08 None    I15V, L19I, M36I, R41K, H69K, L89M, I93L  
ST018-08 ST018-08 None    T12S, I15V, L19I, E35A, M36I, R41K, L63P, H69K, L89M, I93L  
TB037-09 TB037-09 Unknown    T12S, L19I, M36I, N37D, R41K, L63V, H69K, I72M, T74S, L89M, I93L  
TB089-09 TB089-09 None    E35D, N37Q, R41K, L63P, V77I  
TG005-08 TG005-08 None    T12S, I15V, L19I, R41K, I66L, H69K, V77I, L89I, I93L  
TM042-09 TM042-09 Unknown    T12S, I15V, L19I, M36I, R41K, H69K, L89M, I93L  
VN127-10 VN127-10 Unknown    V11I, T12S, I15V, L19I, K20R, M36I, R41K, L63Q, H69K, L89I, I93L  
WJ027-08 WJ027-08 None    T12S, L19I, N37S, H69K, L89M, I93L  
YS010-08 YS010-08 None    T12S, I15V, L19T, K20R, E34A, N37S, R41K, L63P, H69K, V77I, L89I, I93L  
ZA008-08 ZA008-08 None    T12S, I15V, L19T, K20R, E35D, M36I, R41K, H69K, L89M, I93L  
ZM126-10 ZM126-10 Unknown    T12S, I15V, L19I, M36I, N37S, R41K, L63P, I64L, H69K, K70R, L89M, I93L  
ZN119-10 ZN119-10 Unknown  V82F  T12S, L19T, M36I, R41K, D60E, H69K, L89M, I93L N83F, I85F 
ZP040-09 ZP040-09 Unknown    I15V, L19I, E35D, M36I, N37D, L63T, H69K, I93L