Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.


Author Hernandez-Sanchez (2018)
Title Prevalence of Drug Resistance Mutations in Protease, Reverse Transcriptase, and Integrase Genes of North Central Mexico HIV Isolates.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 48
NumPts 48
Subtype B, CRF02_AG


Clinical RT Isolates

SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
MX-HIV-0422 MX-HIV-0422 None None T215A  V60I, A98S, K122P, I135R, I142V, E203D, Q207E, K277R, T286AS, V292VI, I293V, E297EK, G333E, Q334L, F346L, K390R, T403M, E432D, E449D, N474S, H483N, L491P, L517V, A534T, Q547R K275K* 
MX-HIV-050 MX-HIV-050 None None   V60I, R83K, D123E, I135IM, S162Y, R211K, A272S, T290TS, S322T, Q334E, S379G, V381I, K390R, A400T, T403M, V435I, L469I  
MX-HIV-057 MX-HIV-057 None None   K32KI, V60I, K102KQ, K104R, S105SA, I142V, K173N, Q174K, T200A, R211RS, E248D, A272P, K275KR, Q278H, R284RK, T286A, I293V, Q334I, G335S, M357T, T369A, A376T, K390R, E399D, A400T, T403S, K431T, K454R, R461K, S468T, Q509K, K527Q, A554AT  
MX-HIV-066 MX-HIV-066 None None  V179D V35IM, R83K, K103KR, D123E, I135M, D177E, Q207E, A272P, V276I, L283I, P294Q, E297A, M357T, A360V, T369A, A376T, K390R, E399D, A400T, V435VI, L452M, D460N, V467I, T470N, H483Q, L491S, K512R, L517V, Q524E, A554T  
MX-HIV-071 MX-HIV-071 None None   S68G, A98S, D121H, K122E, I135R, Q174K, D177E, R211A, V245E, E248D, A272P, L283I, I293V, T296S, E297EA, I326IV, Q334L, F346Y, R358K, K385R, T386I, K390KR, A400T, T403V, V435L, R461K, L469I, H483Y, S519N, Q524E, V531I, A534S, A554N  
MX-HIV-086 MX-HIV-086 None None M41L, T215C  V245E, K275Q, I293V, E297A, Q334H, A355S, M357I, A376S, T377I, S379A, T386V, A400T, I411IV, P421PL, S468P, H483Y, I506L, L517I, S519N  
MX-HIV-110 MX-HIV-110 None None  V106I S162N, Q207E, R211K, F214L, V245E, A272P, V276I, I293V, E297A, E298A, D324E, I329L, T338S, M357T, A376T, V381I, A400T, E404D, L452LI, D460N, V467I, T470TA, H483N, L503IM, L517I  
MX-HIV-125 MX-HIV-125 None None   V60I, T69TS, K122E, D123N, I135T, S162C, D177DE, I178M, Q197QH, Q207E, A272S, A288S, I293V, E312T, D324E, Q334L, M357I, R358K, K390R, E396D, E404D, K424R, V435E, A437AV, V458I, H483Q, L517I, S519N, K527N, K530R, A554N  
MX-HIV-160 MX-HIV-160 None None D67DN  V35R, T39D, K82R, D123E, I135T, I142T, T165I, K173A, Q174QK, D177E, I178LV, T200KM, A272P, V276VI, I293V, Q334L, G335S, R356K, V365I, K390R, A400AT, E432D, V435VI, H483Y, L491LS, S519N, K550KR, A554T  
MX-HIV-172 MX-HIV-172 None None   E6D, D123E, E194G, G196E, T200L, K277R, Q278H, I293V, I329L, A376S, K390R, V467I, S468P, K476KR, H483HY, A554S  
MX-HIV-207 MX-HIV-207 None None   R83K, D123E, I135V, S162A, Q174K, R211K, A272P, K281KR, T286A, E297K, S322T, M357T, A376T, A400T, V435I, T450S, L452IT, D460N, V467I, H483Y, Q507H, K512R, S519N, A554N  
MX-HIV-210 MX-HIV-210 None None  M230I G51R, R83K, W88*, D121N, D123E, I135V, G141R, D177E, I178V, Q207E, R211K, V245E, A272P, R284K, G333GE, Q334R, G335GS, M357T, V365I, S379G, T386I, K390R, V435LM, V467VI, T470TN, L491V, A554S, K558R  
MX-HIV-230 MX-HIV-230 None None   E6EK, M16MI, D123E, G196E, I202V, Q207E, Q278H, A288S, V292I, I293V, P294PT, E297AV, S322A, D324E, I329L, I341L, F346Y, R356K, M357I, R358K, A360T, A376S, W383*, T386I, K390R, W398*, W402*, W410*, W414*, W426*, V435I, R448K, L517I, W535*, G543R, V559VI G18GS, G444R 
MX-HIV-296 MX-HIV-296 None None   V21I, V35M, T39TA, V60I, D86E, K101Q, D177E, R211T, E224EK, T286A, D320E, M357T, K385R, K390R, A400T, V435A, G436S, D460N, V467I, S468P, Q480H, A508S, K512R, S519N  
MX-HIV-313 MX-HIV-313 None None   V35R, S48T, K102R, K122P, V179I, Q197P, Q207E, R211K, V276I, Q278E, L283I, I293V, E298K, R356K, A360T, T377LP, K390R, V435L, H483Y, K527N, K530R, K558R  
MX-HIV-324 MX-HIV-324 None None   L34LV, K104R, D123E, I135V, I178M, V179I, R211K, A272P, V276T, E297K, L301I, L310I, G359S, V365I, T377Q, E396D, V435A, R448K, L452I, D460N, S468P, K476Q, L491AT, Q524E  
MX-HIV-327 MX-HIV-327 None None   K32N, V60I, A98S, K122P, I135R, I142V, E203D, Q207E, A272AP, K277KR, V292I, I293V, Q334Y, A360T, A371AT, T377L, A400T, E432D, V435VE, D460N, H483Y, L517I, S519SN, E529D, K530KR, A554T  
MX-HIV-352 MX-HIV-352 None None   K104R, I135T, K166R, Q174E, Q207E, V245M, A272S, K277R, T286A, I293V, E312N, I329V, E344D, P345T, F346HY, R356K, A360T, T377I, K431KT, R461K, H483Y, L491S, Q507H, V531I, A554S  
MX-HIV-354 MX-HIV-354 None None   K102Q, I135T, K173N, Q174K, I202V, R211K, F214L, A272P, I293V, R358K, K366R, A376T, T377I, V381I, K395R, A400T, W410C, V435E, D460N, T497S, I506L, A554AT, K558KR  
MX-HIV-355 MX-HIV-355 None None   K102R, K122E, D123N, I142V, S162A, K173EG, P176S, G196E, T200A, E204EK, Q207EG, R211K, F214FL, S251I, T286A, I293V, E297V, P345T, F346Y, A355G, A360T, A371V, K390R, E399D, V435A, V466A, S468N, L491S, L517I, Q520R, K527N, K530R, A554S  
MX-HIV-370 MX-HIV-370 None None   S68G, D123E, I135T, Q174K, D177E, G196E, T200A, Q207E, R211K, V245E, K277R, T286A, V292I, E297R, V317A, I329L, M357V, G359S, S379G, T386I, A400T, L452S, D460N, T470D, I482V, H483L, Q524L, K527N, A554S  
MX-HIV-376 MX-HIV-376 None None   R83K, K122P, K166R, K173R, D177E, Q207A, R211K, K249Q, A272S, K277R, Q334L, S379G, T386I, K390R, A400T, V435E, A446S, N447NS, L452LI, D460N, L491S, V531VI, A554T, K558R  
MX-HIV-381 MX-HIV-381 None None  V106I, V179D K122E, I135L, Q207E, F214L, A272AP, P313A, V317A, S322T, Q334N, G335S, P345Q, F346Y, G359S, T369V, A371T, I375V, A376T, T386I, K390R, E396D, E399D, A400L, K431T, V435T, L452A, H483N, L491S, E529D, A534T, A554N  
MX-HIV-384 MX-HIV-384 None None   K32KT, V35I, V60I, I135R, I142V, I195L, G196E, Q207GR, V245K, S251N, A272P, K275R, T286A, I293V, P294S, E297R, K311R, D324E, I326V, G333D, R356K, M357T, G359S, T377LQ, K390R, A400T, V435P, E449D, D460N, R461K, V466I, V467I, H483Y, L517I, A554S, K558KR  
MX-HIV-385 MX-HIV-385 None None   A98S, D177E, V179I, T200TA, Q207H, R211K, E248D, I293V, I329V, A376T, K390R, A400T, D460N, R461K, S468T, L491S, S519N, I526V, A554T  
MX-HIV-390 MX-HIV-390 None None  V179D R83K, K102R, K122P, D177E, I178M, Q207L, R211K, F214L, E224D, A272P, V276VI, K277R, T286A, I293V, E297K, G333E, F346Y, R356K, A376T, T386I, K390KR, A400T, V435VI, A554S, K558KR  
MX-HIV-395 MX-HIV-395 None None  K103KN K104R, I135T, Q174E, V245M, A272S, T286A, I293V, E297A, E312N, I329V, R356K, A360T, A400AV, R461K, H483Y, L491S, Q507H, E514ED, E516D, V531I, A554S  
MX-HIV-399 MX-HIV-399 None None   R83K, K122P, Q174K, D177E, G196E, Q207E, R211K, K238R, V245T, K249Q, A272P, V276I, K277R, L283I, I293V, E297K, Q334C, R356RK, M357V, S379G, T386I, K390R, A400T, T403I, D460N, L491S, A554T  
MX-HIV-401 MX-HIV-401 None None   K49R, V60VI, K122E, D123G, I135IT, N175Y, D177DE, T200KQ, R211K, K277R, T286A, I293V, E297K, I329IV, G333E, Q334QL, K390R, T403M, E432D, V435VI, E449D, H483N, L491P, L517IV, A534T, Q547R  
MX-HIV-433 MX-HIV-433 None None   V35M, T39A, V118I, K122KR, D123E, I142V, S162DN, Q174QK, D177E, E194Q, G196E, Q207E, R211K, F214L, A272P, K277R, T286A, E297A, P313KT, I329L, G333E, R356K, M357V, A400T, V435L, R461K, V467VI, L517I, S519N, A554S  
MX-HIV-439 MX-HIV-439 None None   P4PH, I5IV, V60I, K122T, D123E, I135T, I142V, S162Y, D177E, G196E, I293V, K366R, V435I, H483Y, L491S, L517I, K527G, K530KR, V531I, A554N, K558R  
MX-HIV-459 MX-HIV-459 None None   T39A, K49R, V60I, R83K, K122E, D123N, I135T, K173KR, D177E, Q207A, R211K, K277R, I293V, P294T, E297R, I329L, M357T, T377Q, E404D, V435I, K454R, D460N, H483Y, L517I, V548I  
MX-HIV-460 MX-HIV-460 None None   V35T, E36ED, T39TA, K49R, V60I, I135V, I142V, S162A, T165I, K173T, Q174K, D177E, G196GE, T200A, Q207E, V245T, E248D, T286A, E291D, V292I, I293V, S322T, G335D, R356K, M357K, G359S, K366R, T369A, I375V, K388R, K390R, K395R, T403R, E432D, V435A, T470P, D471E, Q480H, L491S, K512R, Q524E, E529D, K530R, V531VI, A554S  
MX-HIV-463 MX-HIV-463 None None M184MV V179VD, G190GA, K238N V35IT, R83K, D123DE, L210F, R211RK, V245E, A272P, I293V, E297T, H315Q, V317A, M357T, E370DN, K390R, T403TA, A446S, L452I, D460N, H483Y, L491A, K512Q, L517V, S519N  
MX-HIV-464 MX-HIV-464 None None   V35X, A62AT, L109LM, K122P, I135R, S162C, D177E, I178M, V245M, A272P, I293V, V317A, I341IL, M357T, T369A, A376T, S379A, A400T, V435VG, D460N, Q475QH  
MX-HIV-469 MX-HIV-469 None None   D123E, T200K, V245K, A272P, K277R, T286V, A288T, I293V, E297R, D320N, Q334E, M357S, A360T, T377S, I380V, A400T, V435M, D460N, R461K, V467I, H483N, L491S, I506L, K512Q, L517I, S519N, A554N  
MX-HIV-470 MX-HIV-470 None None   K122E, D123N, I135T, Q197QK, Q207E, F214L, E312T, Q334L, V365I, A400G, E404D, H483Y, S519N, K527N, V559I  
MX-HIV-473 MX-HIV-473 None None  K103N K43N, D123E, I135T, S162C, E169ED, D177E, G196E, Q207K, R211A, V245E, A272S, A288S, V292I, E297A, P313Q, V317A, I329L, T377M, K390KR, E404D, V435A, L452I, V458I, I482V, H483Y, L491S, A502V, L517T, A554T  
MX-HIV-474 MX-HIV-474 None None   K64R, D123E, D177E, I178M, T200I, Q207E, R211K, V245E, T253N, A272P, I293V, P294A, E297K, E312T, Q334L, R356K, M357V, V435I, R461RK, V466A, V467I, H483Y, L491S, E516D, S519N, K527Q, K530R, A534T, Q547A  
MX-HIV-476 MX-HIV-476 None None  M230MI G51GR, V60I, K66KR, R83K, A98S, K122P, I142T, E169D, D177E, I178L, T200TA, Q207N, R211RK, V245VA, T286A, I293V, D324DE, Q334NS, M357T, A376S, T377S, K390R, A400T, V435E, D460N, V466I, H483Y, L517I, A554T W71W*, G213GR, W229W*, W266W* 
MX-HIV-494 MX-HIV-494 None None   V60I, S105A, D123E, I135T, I142V, S162Y, D177E, G196E, I293V, K366R, V435I, H483Y, L491S, L517I, K527G, K530KR, V531I, A554S, K558R  
MX-HIV-527 MX-HIV-527 None None   D123E, D177E, V179I, T200TI, Q207A, L283I, E312T, M357T, E370D, K390R, E404D, V435L, G436E, L491S, A508G, L517I, S519N, K527Q, A554S  
MX-HIV-540 MX-HIV-540 None None   V60I, I135X, A272P, I274V, K281R, T286A, I293V, K311KR, P313PT, D324E, I329V, I341F, T369A, T377X, A400T, L452S, S468P, L491S, S519N, Q547K, A554S  
MX-HIV-542 MX-HIV-542 None None   V8I, R83K, K101R, K122P, D123E, I135T, D177E, R211G, V245I, A272P, Q334L, F346C, R358K, K366R, A376T, T386I, K390R, E399D, A400T, E432D, D460N, H483C, L491S, K512R, L517I, S519N, Q520E, A554S, K558KR, V559I  
MX-HIV-545 MX-HIV-545 None None   V35M, T39A, K104N, V118I, D123E, I142V, Q174K, D177E, V179I, E194Q, Q207E, R211K, F214L, A272P, V276I, K277R, T286A, E297EA, E312ED, I329L, G333E, R356K, M357V, A400T, T403X, V435A, R461K, L517I, S519N, A554S, V559I  
MX-HIV-546 MX-HIV-546 None None   V60I, A98S, D123E, Q197K, T200E, R211K, V245E, K249KR, A272P, K277R, Q278H, I293V, P294Q, E297R, E298D, I329L, A360T, T377LS, V381I, A400I, V435I, G436E, E449EK, D460N, V467I, S468P, Q480H, H483Y, L491S, K512R, E516D, S519N, G544GR, A554S W535W* 
MX-HIV-553 MX-HIV-553 None None   V35T, V60I, A98S, K122E, I142V, E248ED, A272S, L283LI, I293V, I326V, Q334C, F346H, R356K, G359S, I375V, K390R, A400T, V435A, L452S, H483Q, G504E, A554N P387S 
MX-HIV-554 MX-HIV-554 None None   I50V, V60I, P119PS, K122KE, I135V, K173T, Q174K, D177E, Q197E, I293IV, K311R, M357V, I375V, T386I, A400T, K431T, L452V, D460N, R461K, L469I, H483Y, G490GE, L491S, K512T, S519N, E529D L551LF