Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Hassan (2018)
Title HIV-1 subtype diversity, transmission networks and transmitted drug resistance amongst acute and early infected MSM populations from Coastal Kenya.
Citation PLoS ONE
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 97
NumPts 97
Subtype A, D, C, G, CRF10_CD

 

Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
00C210001 00C210001 None    I13V, K14R, I15IL, K20R, D25DN, E35D, M36I, N37D, R41K, R57K, H69K, L89M  
00C210002 00C210002 None    E35D, M36I, N37D, R41K, K45R, R57K, E65D, H69K, L89M  
00C210003 00C210003 None    L10P, K14R, K20R, E35D, M36I, N37D, R41K, R57K, H69K, L89M  
00C210005 00C210005 None    L10V, I13V, G16E, K20R, E35D, M36I, R41K, H69K, L89M  
00C210006 00C210006 None    I13V, E35D, M36I, R41K, K45R, H69K, L89M  
00C210007 00C210007 None    I13V, K14R, E35D, M36I, N37D, R41K, I62V, H69K, K70R, L89M  
00C210011 00C210011 None    I13V, G16E, K20R, E35D, M36I, R41K, Q61N, L63T, G68E, H69K, K70R, L89M, T91V, I93L  
00C210012 00C210012 None    I13V, G16E, K20R, E35D, M36I, R41K, Q61N, L63T, I66IV, G68E, H69K, K70R, L89M, T91V, I93L  
00C210014 00C210014 None    I13V, E35D, M36I, R41K, R57K, H69K, V82VI, L89M  
00C210020 00C210020 None    I13V, K14R, E35D, M36I, R41K, L63A, H69K, V82I, L89M  
00C210021 00C210021 None    L10V, I13V, I15V, G16E, E35D, M36I, R41K, R57K, L63V, H69K, L89M  
00C210028 00C210028 None    I13V, G16A, K20R, E35D, M36I, R41K, K45KR, R57RK, E65ED, H69K, L89M  
00C210029 00C210029 None    L10V, I13V, E35D, M36I, N37D, R41K, K45R, R57K, D60E, L63V, H69K, L89M  
00C210031 00C210031 None    I13V, G16A, K20R, E35D, M36IV, R41K, H69K, L89M  
00C210032 00C210032 None    V11X, T12S, I15V, L19X, M36I, N37K, R41N, L63P, H69K, L89M, I93L  
00C210035 00C210035 None    L10V, I13V, I15V, E35D, M36I, N37D, R41K, H69K, L89M  
00C210036 00C210036 None    I13V, K14R, L19I, E35D, M36I, R41K, H69K, L89M  
00C210037 00C210037 None    T12S, I15V, M36I, N37K, R41KN, L63T, H69K, L89M, I93L, C95W  
00C210038 00C210038 None    I13V, I15V, E35D, M36I, N37D, R41K, H69K, L89M  
00C210039 00C210039 None    I13V, L33I, E35D, M36I, R41K, K43R, R57K, H69K, L89M  
00C210041 00C210041 None    I13V, L19I, E35D, M36I, R41K, H69K, L89M  
00C210042 00C210042 None    T12S, I15V, M36I, N37K, R41N, L63T, H69K, L89M, I93L  
00C210043 00C210043 None    T12S, I15V, G16E, L19I, K20R, M36I, P39S, R41K, L63P, H69K, I72L, I93L  
00C210045 00C210045 None   L33F I13V, K14R, M36I, P39T, R41K, R57K, H69K, L89M  
00C210047 00C210047 None    I13V, E35D, M36I, R41K, H69K, L89M  
00C210048 00C210048 None    I13V, L19I, E35D, M36I, R41K, H69K, L89M  
00C210049 00C210049 None    L10I, I13V, E35D, M36I, N37D, R41K, K45R, R57K, E65D, H69K, L89M  
00C210050 00C210050 None    L10V, I13V, E35D, M36I, N37D, R41K, K45R, R57K, D60E, L63V, H69K, L89M  
00C210051 00C210051 None   L33F I13V, K14R, M36I, P39T, R41K, R57K, H69K, L89M  
00C210052 00C210052 None    I13V, G16E, K20R, M36I, P39S, R41K, R57K, D60E, I62V, L63N, I64V, H69HQ, K70R  
00C210053 00C210053 None    E35D, M36K, L38W, R41K, I62V, L63T, E65D, H69K, L89M  
00C210054 00C210054 None    L10V, I13V, I15V, E35D, M36I, N37D, R57K, L63S, H69K, L89M  
00C210055 00C210055 None    L10I, I13V, G16E, E35D, M36I, R41K, I62V, L63T, E65D, H69K, L89M  
00C210057 00C210057 None    L10V, I13V, E35D, M36I, N37D, R41K, K45R, R57K, D60E, L63V, H69K, L89M  
00C210058 00C210058 None    L10I, I13V, G16E, E35D, M36I, R41K, I62V, L63T, E65D, H69K, L89M  
00C210059 00C210059 None    K20R, E35D, M36X, R41K, K45R, R57RK, I62IV, L63LP, H69K, L89M  
00C210060 00C210060 None    I13V, K14R, I15V, E35D, M36I, N37D, R41K, K45R, R57K, L63P, H69K, L89M, I93M  
00C210061 00C210061 None    I13V, G16E, K20R, M36I, P39S, R41K, R57K, D60E, I62V, L63N, I64V, K70R  
00C210062 00C210062 None    L10V, I13V, E35D, M36I, N37D, R41K, K45R, R57K, D60E, L63V, H69K, L89M  
00C210063 00C210063 None    I13V, K20I, M36I, N37S, R41K, C67G, H69K, V82I, L89M  
00C210064 00C210064 None    L10I, I13V, G16E, E35D, M36I, R41K, I62V, L63T, E65D, H69K, L89M  
00C210065 00C210065 None    I13V, I15V, K20R, M36I, R41K, R57K, L63P, H69K  
00C210066 00C210066 None    I13V, K14R, G17E, K20R, E35D, M36I, R41K, R57K, D60E, I62V, H69K, K70R, L89M  
00C210067 00C210067 None    I13V, I15IV, G16A, K20R, E35D, M36I, R41K, H69K, L89M  
00C210070 00C210070 None    I13V, K20R, E35D, M36I, N37D, R41K, K45R, R57K, I62V, L63P, H69K, I72V, P79S, L89M  
00C210071 00C210071 None    L10I, I13V, G16E, E35D, M36I, R41K, I62V, L63T, E65D, H69K, L89M  
00C210072 00C210072 None    I13V, E35N, M36I, R41K, H69K, L89M  
00C210073 00C210073 None    L10V, I13V, I15V, G16E, E35D, M36I, R41K, R57K, L63V, H69K, L89M  
00C210074 00C210074 None    I13V, K14R, E35D, M36I, N37D, R41K, K45R, R57K, E65D, H69K, L89M  
00C210076 00C210076 None    L10V, T12N, I13V, G16E, K20R, E35D, M36I, R41K, R57K, Q61E, L63S, E65D, H69K, K70R, L89M  
00C210078 00C210078 None    L10V, I13V, K14R, I15V, G16E, E35D, M36I, R41K, R57K, L63V, H69K, L89M  
00C210079 00C210079 None    I13V, E35N, M36I, R41K, H69K, L89M  
00C210080 00C210080 None    L10I, I13V, G16E, E35D, M36I, R41K, I62V, L63T, E65D, H69K, L89M  
00C210081 00C210081 None    I13V, K14M, R41K, L63A, H69R, V77I  
00C210082 00C210082 None    I13V, G16E, K20R, E35D, M36I, R41K, L63A, H69K, K70R, L89M, T91V, I93L  
00C210083 00C210083 None    L10I, I13V, E35D, M36I, N37D, R41K, K45R, R57K, E65D, H69K, L89M  
00C210084 00C210084 None    W6R, T12A, I13V, K20R, M36I, N37D, R41K, L63P  
00C210085 00C210085 None   K20T L10I, T12S, I15V, L19I, N37S, R41K, L63A, H69Q, I72V, I93L  
00C210086 00C210086 None    G16E, M36I, R41K, I62V, L63G, I64V  
00C210087 00C210087 None    L10V, I13V, K14R, I15V, G16E, E35D, M36I, R41K, R57K, L63V, H69K, L89M  
00C210088 00C210088 None    G16E, M36I, R41K, L63N, I64V  
00C210089 00C210089 None    L10V, I13V, E35D, M36I, N37E, R41K, K45R, R57K, D60E, L63V, H69K, L89M  
00C210092 00C210092 None    L10V, I13V, E35D, M36I, N37D, R41K, K45R, R57K, D60E, L63V, H69K, L89M  
00C210093 00C210093 None    L10V, I13V, K14R, E35D, M36I, N37E, R41K, K45R, R57K, D60E, L63V, H69K, L89M  
00C210094 00C210094 None    I13V, I15V, L19I, E35D, M36I, R41K, K45R, R57K, H69K, L89M  
00C210095 00C210095 None    T12I, I13V, E35D, M36I, N37E, R41K, R57K, H69K, L89M  
00C210096 00C210096 None    G16E, M36I, R41K, L63G, H69Y  
00C210097 00C210097 None    I13V, K14KR, K20R, E35D, M36I, N37D, R41K, K45R, R57K, H69K, L89M  
00C210098 00C210098 None    I13V, E35D, M36I, P39S, R41K, R57K, I62V, L63I, I64M, H69K, L89M  
1976 1976 None    E35N, M36I, R41K, K43R, R57K, H69K, L89M  
2134 2134 None    L10I, E35D, M36I, N37D, R41K, H69K, L89M  
2207 2207 None    L33I, E35D, M36I, P39S, R41K, R57K, L63T, H69K, L89M  
2218 2218 None    E35D, M36I, R41K, R57K, L63P, H69K, L89M  
2239 2239 None    E35D, M36I, R41K, R57K, L63V, H69K, L89M  
2250 2250 None    L10I, I13V, K14R, I15V, E35D, M36I, N37E, R41K, K45R, R57K, D60E, L63V, H69K, L89M  
2265 2265 None    E35D, M36I, N37D, R41K, R57K, H69K, L89M  
2288 2288 None    K14R, M36I, R41K, L63T, I64V, E65D  
2320 2320 None  D30DNY  T31X, E35D, M36I, N37D, R41K, K45R, R57K, D60E, L63V, H69K, L89M D29DGV 
2344 2344 None    I13V, K14V, L19I, R41K, L63A, H69R, V77I, L89M  
2357 2357 None    E35D, M36I, R41K, R57K, D60E, H69K, L89M  
2360 2360 None    K20I, E35N, M36I, R41K, R57K, Y59H, H69K, L89M  
2368 2368 None    I15V, L19I, N37S, R41K, K45R, L63A, H69Q, I72V, I93L  
2373 2373 None    L19I, M36I, R41K, I64V, H69Y  
2402 2402 None    K14R, K20R, E35D, M36I, R41K, R57K, H69K, L89M  
2407 2407 None    T12K, E35D, M36I, N37D, R41K, R57K, Y59F, Q61E, H69K, L89M  
2422 2422 None    M36I, R41K  
2437 2437 None    K14R, G16E, K20R, E35D, M36I, R41K, R57K, I62V, H69K, L89M  
2438 2438 None    R41K, L63A, I64V, H69Y, I72V, V77I  
2445 2445 None    L10I, T12S, I15V, L19I, N37S, R41K, K45R, L63A, H69Q, I72V, I93L  
2492 2492 None    E35N, M36I, N37E, R41K, R57K, H69K, V77I, L89M  
2560 2560 None    K20R, E35D, M36I, N37D, R41K, R57K, H69K, K70R, L89M  
2597 2597 None    K20R, M36I, N37D, R41K, R57K, L63P, I64V, H69Y  
2628 2628 None    E35D, M36I, R41K, R57K, H69K, L89M  
2656 2656 None    G17D, Q18K, L19I, N37S, R41K, R57RK, L63A, H69Q, I72V, I93L  
2694 2694 None    Q18H, K20R, E35D, M36I, N37D, R41K, R57K, L63P, H69K, V77I, L89M  
2740 2740 None    K20R, E35N, M36I, N37D, R41K, R57K, L63S, H69K, V77I, L89M  
2796 2796 None    Q18K, K20R, E35D, M36I, N37D, R41K, R57K, C67Y, H69K, L89M