Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Keita (2019)
Title Impact of HIV-1 primary drug resistance on the efficacy of a first-line antiretroviral regimen in the blood of newly diagnosed individuals in Bamako, Mali.
Citation J Antimicrob Chemother
SelectedGene PR
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 90
NumPts 90
Subtype CRF02_AG, A, CRF06_cpx, B, C, G

 

Clinical PR Isolates


SubjectIsolatePIsWksPIMajorPIMinorCommonUnusual
PT001_bl ISO001_bl None    I13V, I15L, G16X, K20I, M36I, L38LF, R41K, L63H, I64M, H69K, K70R, L89M N88NH 
PT001_cvf ISO001_cvf None    I13V, K14R, G16E, K20I, M36I, R41K, L63H, I64M, H69K, K70R, L89M, L97LF  
PT002_bl ISO002_bl None    I13V, K14R, G16E, K20I, M36I, R41K, Q61QK, H69K, I72E, L89M  
PT002_cvf ISO002_cvf None    I13V, K14R, G16E, K20I, M36I, R41K, Q61QK, H69K, I72E, L89M  
PT003_bl ISO003_bl None    L10I, I13V, G16E, L19I, E35D, M36I, R41K, K45R, Q61QH, L63T, E65D, H69Q, L89M  
PT003_cvf ISO003_cvf None    I3IN, L10I, I13V, G16E, L19I, E35D, M36I, R41K, K45KR, Q61QH, L63T, E65D, H69Q, L89M  
PT004_bl ISO004_bl None    L10LV, I13V, G16E, K20V, M36I, L63S, I64L, H69K, I72L, L89LM  
PT005_bl ISO005_bl None    T12TP, I13V, K14R, K20I, E35Q, M36I, N37D, R41K, R57K, C67E, H69R, I72V, V82I, L89M  
PT006_bl ISO006_bl None    I13AV, K14KR, K20V, A22AV, M36I, R41K, L63P, H69K, L89I  
PT008_bl ISO008_bl None    I13V, K20I, M36I, L63P, G68E, H69KR, A71AT, I72IV, L89I  
PT009_bl ISO009_bl None    I13V, K14R, K20I, E35N, M36I, R41RK, H69K, L89M  
PT010_bl ISO010_bl None    V11I, I13V, G17E, K20I, M36I, R41K, I64L, H69K, L89M  
PT010_cvf ISO010_cvf None    I13V, G16E, K20I, M36I, R41K, L63H, H69K  
PT011_bl ISO011_bl None    T12I, K14KR, M36I, N37D, R41K, I62V, L63Q, I64V, I72V  
PT011_cvf ISO011_cvf None    T12I, M36I, N37D, R41K, I62V, L63Q, I64V, I72V  
PT013_bl ISO013_bl None    T12A, I13V, K14R, K20I, M36I, R41K, K43R, L63P, H69K, L89M  
PT014_bl ISO014_bl None    I13V, K14R, G17E, K20I, M36I, R41K, L63H, H69K, K70R, L89M  
PT014_cvf ISO014_cvf None    I13V, K14R, G17E, K20I, M36I, R41K, L63H, H69K, K70R, L89M  
PT015_bl ISO015_bl None    T12S, I13V, K14R, K20I, E35EK, M36I, R41K, L63P, H69K, L89M  
PT016_bl ISO016_bl None    I13V, K20I, M36I, N37S, R41K, I64M, H69K, L89M  
PT017_bl ISO017_bl None    I13V, G16E, K20I, M36I, R41K, H69K, K70R, L89M  
PT018_bl ISO018_bl None    I13V, I15V, G16E, L19V, K20KR, M36I, R41K, L63T, H69K, T74S, V75VI, L89M, I93L  
PT019_bl ISO019_bl None    L10V, I13V, K14R, G16E, L19P, K20M, E35D, M36I, R41K, L63H, I64IL, H69K, L89M  
PT019_cvf ISO019_cvf None    L10V, I13V, K14R, G16E, L19P, K20M, E35D, M36I, R41K, L63H, H69K, L89M  
PT020_bl ISO020_bl None    I13V, G16E, K20I, M36I, R41K, H69K, L89M  
PT022_bl ISO022_bl None    L10I, I13V, K20I, M36I, R41K, C67N, H69K, V82I, L89M  
PT023_bl ISO023_bl None    I13A, K14R, G16E, L19Q, K20I, M36I, H69K, L89M  
PT023_sp ISO023_sp None    I13A, K14KR, L19P, K20I, M36I, N37D, R41K, L63H, I64IV, H69K, K70R, L89I  
PT024_bl ISO024_bl None    L10I, I13V, L19P, K20I, M36I, N37D, R41K, Q61H, L63LP, C67Y, H69K, K70R, L89M  
PT025_bl ISO025_bl None    I13V, K14R, K20I, E35D, M36I, R41K, L63P, H69K, L89M  
PT025_cvf ISO025_cvf None    I13V, K14R, K20I, E35D, M36I, R41K, L63P, H69K, L89M  
PT026_bl ISO026_bl None    I13V, L19P, K20I, M36I, N37D, R41RK, I64M, H69K, K70KR, L89M  
PT026_cvf ISO026_cvf None    I13V, L19P, K20I, M36I, N37D, I64M, H69K, L89M  
PT027_bl ISO027_bl None    I13V, L19Q, K20I, E34D, M36I, R41K, I62V, L63P, I64M, H69K, L89M  
PT029_bl ISO029_bl None    T12K, I13V, K14R, Q18E, K20I, M36I, N37D, R41K, H69K, L89M  
PT030_bl ISO030_bl None    L10LV, I13V, I15LV, K20I, M36I, R41K, I64M, H69K, L89IM  
PT030_cvf ISO030_cvf None    L10LV, I13V, I15V, K20I, M36I, R41K, I64M, H69K, L89IM  
PT038_bl ISO038_bl None    I13V, K20I, M36I, R41K, L63P, H69K, L89M  
PT041_bl ISO041_bl None    T12A, I13V, G17E, K20I, M36I, N37D, L63V, I64M, H69K, K70KR, L89M  
PT041_cvf ISO041_cvf None    T12A, I13V, G17GE, K20I, M36I, N37D, R41RK, L63V, I64M, H69K, L89M  
PT043_bl ISO043_bl None    V11I, I13V, K14R, G16E, K20I, M36I, R41K, I64M, H69K, L89M  
PT044_bl ISO044_bl None    I13V, K14R, G17E, K20I, M36I, R41K, I64M, H69K, K70R, P79A, L89M  
PT044_cvf ISO044_cvf None    I13V, K14R, G17E, K20I, M36I, R41K, I64IM, H69K, K70R, P79A, L89M  
PT046_bl ISO046_bl None    I13V, K20I, M36I, R41K, L63P, H69K, L89M  
PT046_cvf ISO046_cvf None    I13V, I15V, G16E, K20I, M36I, R41K, I64M, H69K, L89M  
PT047_bl ISO047_bl None    L10V, T12K, I13V, I15V, K20I, M36I, R41K, L63I, I64M, H69K, L89M  
PT047_cvf ISO047_cvf None    L10V, T12K, I13V, I15V, K20I, M36I, R41K, L63V, I64M, H69K, L89M  
PT048_bl ISO048_bl None    I13V, K14R, K20I, E35N, M36I, N37D, R41K, C67E, H69K, L89M  
PT049_bl ISO049_bl None    I13V, I15V, G16E, K20I, M36I, R41K, I64M, H69K, L89M  
PT049_cvf ISO049_cvf None    I13V, G17E, K20I, M36I, R41K, I64L, H69K, L89M  
PT053_bl ISO053_bl None    T12Q, I13V, K14T, L19PS, K20I, E35D, M36I, N37D, L63P, H69R, L89M  
PT055_bl ISO055_bl None    L10V, I13V, K14R, G16E, L19P, K20I, E35Q, M36I, N37D, R41K, K43R, L63H, H69K, L89M  
PT055_cvf ISO055_cvf None    L10V, I13V, K14R, G16E, L19P, K20I, E35Q, M36I, N37D, R41K, K43R, L63H, H69K, L89M K45KE 
PT060_bl ISO060_bl None    I13V, L19P, K20I, M36I, R41K, I64L, H69K, K70R, L89M  
PT061_bl ISO061_bl None    I13V, I15L, K20I, M36I, L38LF, R41K, I64M, H69K, K70R, L89M  
PT064_bl ISO064_bl None    I13V, K14R, G16E, K20I, M36I, R41K, Q61QK, I64IM, H69K, I72E, L89M  
PT065_bl ISO065_bl None    L10I, I13V, L19P, K20I, M36I, R41K, L63P, H69K, K70KR, V77I, L89M V11M 
PT065_sp ISO065_sp None    L10I, I13V, L19P, K20I, M36I, R41K, L63P, H69K, K70KR, L89M V11M 
PT066_bl ISO066_bl None    I13V, K20I, M36I, R41K, H69K, K70KR, I72L, L89M  
PT069_bl ISO069_bl None    I13V, L19P, K20I, M36I, N37D, R41K, F53FY, L63P, H69K, K70KR, L89M  
PT070_bl ISO070_bl None    L10LI, I13V, G16GE, K20I, E35DN, M36I, R41K, L63H, H69K, L89M  
PT070_cvf ISO070_cvf None    I13V, K20I, E35N, M36I, R41K, K43X, L63H, H69K, L89M D29DAV 
PT072_bl ISO072_bl None    L10I, I13V, K14R, I15V, G16E, E35D, M36I, R57RK, I62IV, L63ST, H69K, K70R, L89M  
PT073_bl ISO073_bl None    I13V, K14R, K20I, M36I, N37D, R41K, H69K, L89M  
PT076_bl ISO076_bl None    T12I, I13A, K14R, L19P, K20I, M36I, N37D, R41K, L63P, H69I, K70R, L89I  
PT077_bl ISO077_bl None    T4TS, I13A, K14KR, L19P, K20I, M36I, N37D, R41K, L63H, I64IV, H69K, K70R, L89I  
PT078_bl ISO078_bl None    I13V, I15L, G16GE, K20I, M36I, R41K, I64M, E65EK, H69K, K70R, L89M  
PT080_bl ISO080_bl None    I13V, K14R, L19P, K20I, M36I, R41K, H69K, L89M  
PT080_cvf ISO080_cvf None    I13V, K14R, G16GE, L19LP, K20I, M36I, R41K, H69K, L89M  
PT081_bl ISO081_bl None    L10V, I13V, L19P, K20I, M36I, N37D, R41K, H69K, K70R, L89M  
PT081_cvf ISO081_cvf None    I13V, K14R, K20I, M36I, N37D, R41K, G68E, H69R, V82VI, L89M  
PT085_bl ISO085_bl None    I13V, K14R, G16E, K20I, E35D, M36I, R41K, H69K, I72M, L89M  
PT085_cvf ISO085_cvf None    R8RQ, T12TI, I13A, I15IV, K20V, A22V, M36I, R41K, L63LP, H69K, K70R, L89I  
PT087_bl ISO087_bl None    I13V, K14R, K20I, E35A, M36I, R41K, I64M, H69K, L89M  
PT088_bl ISO088_bl None    I13V, K14R, G17E, K20I, M36I, R41K, Q61H, I64M, H69K, K70R, L89M  
PT090_bl ISO090_bl None    I13A, K20I, M36I, R41K, H69K, L89M  
PT091_bl ISO091_bl None    I13V, Q18R, L19P, K20I, E35D, M36I, N37E, R41K, H69K, V77I, L89M  
PT091_cvf ISO091_cvf None    I13V, Q18R, L19P, K20I, E35D, M36I, N37E, R41K, H69K, V77I, L89M  
PT093_bl ISO093_bl None    T12A, I13V, K14R, K20I, M36I, N37S, R41K, L63S, H69K, K70R, L89M  
PT096_bl ISO096_bl None    L10I, I13V, K14R, G16E, L19P, K20I, E35D, M36I, R41K, L63GS, H69K, K70R, L89M  
PT096_cvf ISO096_cvf None    L10I, I13V, K14KR, G16E, L19P, K20I, E35D, M36I, R41K, L63S, H69K, K70R, L89M  
PT098_bl ISO098_bl None    L10V, I13V, K14R, G16E, L19P, K20M, E35D, M36I, R41K, L63H, I64IL, H69K, L89M  
PT101_bl ISO101_bl None    L10V, I13A, K20I, M36I, N37D, R41RK, L63P, H69K, L89M  
PT101_cvf ISO101_cvf None    L10V, I13A, K20I, M36I, N37D, R41RK, L63P, H69K, L89M  
PT103_bl ISO103_bl None    V11I, I13V, K14R, G16E, K20I, M36I, R41K, I64M, H69K, L89M  
PT104_bl ISO104_bl None    I13V, L19P, K20I, M36I, N37D, R41K, L63P, H69K, K70R, L89M  
PT104_sp ISO104_sp None    I13V, K14R, G16E, K20I, M36I, R41K, L63LH, I64M, H69K, K70R, L89M  
PT107_bl ISO107_bl None    I13V, K14R, G16E, K20I, M36I, R41K, L63LH, I64M, H69K, K70R, L89M  
PT107_cvf ISO107_cvf None    I13V, K14R, G16E, K20I, M36I, R41K, L63LH, I64M, H69K, K70R, L89M  
PT115_bl ISO115_bl None    I13V, K14R, K20I, M36I, R41K, I64ILM, C67S, H69K, K70KR, V82VI, L89M