Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Coetzee (2017)
Title HIV-1 viraemia and drug resistance amongst female sex workers in Soweto, South Africa: A cross sectional study.
Citation PLoS ONE
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 119
NumPts 119
Subtype C

 

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Page 1   listing Isolate 1 to Isolate 100 from Total 119 Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
PTSW000233 SW000233 Unknown Unknown   K32N, V35K, E36A, T39E, S48T, K122E, D123S, A158S, T165I, K166R, K173T, Q174K, D177E, T200A, I202V, Q207N, R211K, F214L, V245Q, E248I  
PTSW000236 SW000236 Unknown Unknown  K103N, V108VI V35T, T39E, S48T, D121DH, K122E, D123DN, I142IT, K173A, D177E, I178IL, G196K, Q197E, T200TA, Q207KN, R211KQ, V245Q  
PTSW000243 SW000243 Unknown Unknown   V35T, T39E, S48ST, V60I, K122E, D123DG, I135V, K173A, Q174K, D177E, I178IM, T200A, Q207E, R211K, V245Q, E248D  
PTSW000256 SW000256 Unknown Unknown   V35IMT, T39K, S48ST, V60I, K122KE, I142T, K173X, Q174KN, D177E, V189VI, T200A, Q207E, R211K, V245Q, E248N  
PTSW000271 SW000271 Unknown Unknown   E6D, V8I, K11R, K32E, V35T, E36K, T39E, S48T, K122E, K173A, Q174K, D177E, G196K, Q197E, T200A, I202V, Q207E, R211K, V245Q  
PTSW000284 SW000284 Unknown Unknown K70E, M184V K103N, V108I, H221HY, P225H E6D, V35R, E36A, T39E, S48T, V60I, K102Q, K104KR, S162C, K173A, D177E, V189VI, T200A, I202V, Q207E, R211K, L228R, V245Q L109LQ 
PTSW000334 SW000334 Unknown Unknown A62AV, K65KR, M184V Y188L, G190GA V35T, E36A, T39E, S48T, S68SN, K101X, K103KR, K122E, D123G, I135IV, I142IV, K173A, Q174K, D177E, T200A, Q207D, R211K, F214L, V245Q V179IN 
PTSW000336 SW000336 Unknown Unknown   V35T, E36A, T39E, S48T, K122E, D123NS, K173A, Q174QK, D177E, T200A, Q207DE, R211K, V245Q, E248T  
PTSW000357 SW000357 Unknown Unknown   V35T, E36A, T39E, S48T, V60I, D121Y, K122E, D123E, I135T, S162A, Q174K, D177E, T200A, Q207D, R211K, V245Q K173F 
PTSW000378 SW000378 Unknown Unknown  K103N P4S, K20R, V35T, E36A, T39K, K43E, S48T, V60I, K102R, S162A, K173A, D177E, I178V, T200A, Q207E, R211K, V245Q  
PTSW000384 SW000384 Unknown Unknown   V35T, E36A, T39E, S48T, V60I, K122E, D123GS, K173T, D177E, I178L, T200A, Q207E, V245E, D250E  
PTSW000410 SW000410 Unknown Unknown   V35T, E36A, T39EG, E40ED, S48T, V60I, K122E, K173T, Q174K, D177E, T200A, Q207E, R211K, V245K  
PTSW000416 SW000416 Unknown Unknown M184V V106M, G190A, F227L K20R, V35T, T39E, S48T, V60I, K122E, K173V, Q174R, D177E, T200A, Q207E, R211K, F214L, V245Q, E248D, D250E, S251D  
PTSW000418 SW000418 Unknown Unknown  K103KN V35T, E36A, T39E, S48T, K102R, K122E, D123N, K173T, T200A, Q207E, R211K, V245L P247PS 
PTSW000420 SW000420 Unknown Unknown   T27S, V35T, E36A, T39E, S48T, K102Q, K122E, I135V, S162C, K173A, T200A, E204K, Q207D, R211K, V245Q  
PTSW000422 SW000422 Unknown Unknown   K11A, V35T, E36A, T39E, S48T, V60I, K122E, D123S, I135V, T165I, K173T, V179I, T200A, Q207E, R211K, V245Q, D250E  
PTSW000426 SW000426 Unknown Unknown   V35T, E36EA, T39E, S48T, V60VI, K122KE, I135V, S162C, K173A, Q174K, D177E, I195IL, G196E, T200A, Q207E, R211K, V245Q, D250E  
PTSW000440 SW000440 Unknown Unknown  E138A K20R, V35IM, E36EA, T39E, S48T, A98S, K122KE, D123DN, I135M, S162C, K173T, Q174N, D177E, I178V, V179VI, T200A, Q207K, V245Q, E248D, D250E  
PTSW000458 SW000458 Unknown Unknown   K20R, V35T, E36A, T39D, S48T, K64KR, K122E, D123N, K173A, T200A, E203ED, Q207A, R211K, V245Q  
PTSW000459 SW000459 Unknown Unknown  K103N, V179VD V35T, T39EK, S48ST, K122E, D123S, K166R, K173T, D177E, T200A, Q207E, R211K, F214L, V245Q  
PTSW000462 SW000462 Unknown Unknown   V35T, E36A, T39E, E40D, A62AT, K122E, D123G, K173A, D177E, T200A, Q207E, R211K, V245Q  
PTSW000468 SW000468 Unknown Unknown  K103N V35T, T39TA, S48T, V60I, K122E, D123S, A158S, S162A, K173A, D177E, T200A, Q207E, R211K, V245K  
PTSW000488 SW000488 Unknown Unknown   K20R, K32KT, V35K, E36A, T39E, K43R, S48T, K122E, D123GS, S162C, K173A, G196K, T200A, Q207X, R211K, V245Q, E248D, D250E  
PTSW000490 SW000490 Unknown Unknown   V35T, E36A, T39E, S48T, K122E, K173T, Q174K, G196E, T200A, Q207E, R211K, P243T, V245Q, D250E  
PTSW000500 SW000500 Unknown Unknown K65R, K70T, V75VIM, M184V V106M, V179D P4T, K11T, K20R, V35T, E36A, T39E, S68N, K103R, V118I, D121HY, K122E, T139K, A158S, K173A, Q174E, D177E, G196KR, T200A, I202V, Q207E, F214L, L228LHQ, V245Q, D250E S105I 
PTSW000504 SW000504 Unknown Unknown   V35T, T39A, E40D, S48T, V60I, T69TS, D121HY, K122KE, D123EG, K173T, Q174K, D177E, I195IL, T200A, Q207E, R211K, V245E, E248D, D250E  
PTSW000537 SW000537 Unknown Unknown   V35T, E36A, T39E, S48T, K122E, D123G, I135V, I142IT, S162A, E169Q, K173AT, T200A, Q207E, R211KQ, V245Q, S251SR  
PTSW000547 SW000547 Unknown Unknown   V35T, T39E, S48T, D121Y, K122E, S162C, K173A, Q174K, D177E, G196K, T200A, Q207E, R211K, V245Q N81NY 
PTSW000564 SW000564 Unknown Unknown   K20R, V21I, V35I, E36A, T39E, E40ED, S48T, V60I, K122E, D123S, A158AS, S163ST, K173A, D177E, T200A, Q207D, R211K, V245E, D250E  
PTSW000608 SW000608 Unknown Unknown   V35T, T39E, S48T, K122E, D123G, K173X, Q174QE, D177DE, E194EA, G196GE, T200A, Q207E, V245Q, E248D  
PTSW000609 SW000609 Unknown Unknown  K103KN V35T, E36A, T39E, S48T, V60VI, K122KE, K173A, D177E, T200A, Q207D, R211K, V245EK  
PTSW000623 SW000623 Unknown Unknown M41L, M184V, T215F K103KN, Y181C, G190A V35T, T39E, S48T, V90VI, K122E, D123N, I135R, K166R, T200A, I202V, Q207E, R211K, F214FL, V245Q  
PTSW000632 SW000632 Unknown Unknown   E28G, V35T, T39E, S48T, V60I, K122E, D123G, I135V, E169EK, K173A, D177E, I178IL, T200AV, Q207E, V245Q, E248D  
PTSW000642 SW000642 Unknown Unknown   E6D, V35T, T39E, V118I, D121H, K122E, I142K, T165I, K173A, Q174K, D177E, I178L, T200A, Q207E, F214L, V245Q, E248V  
PTSW000652 SW000652 Unknown Unknown  A98AG K20R, V35K, T39E, S48T, V60I, K122E, D123NS, I135T, S162C, K173A, D177G, T200A, Q207G, R211K, D218E, V245Q  
PTSW000665 SW000665 Unknown Unknown   V35T, T39D, K43KR, S48T, K122E, S162A, K173T, Q174K, V179I, T200A, Q207E, F214L, V245E, D250E  
PTSW000667 SW000667 Unknown Unknown   V35T, E36A, T39D, K43R, S48T, K122E, D123G, K166R, K173V, Q174K, D177E, I178L, G196E, I202V, Q207E, R211K, V245Q  
PTSW000695 SW000695 Unknown Unknown   V35T, E36EA, T39K, K43E, S48T, K103R, K122E, D123S, I135IV, T200A, E204K, Q207E, R211K, F214L, V245Q  
PTSW000706 SW000706 Unknown Unknown K65R, K70T, V75VIM, M184V V106M, V179D P4T, K11KT, K20R, V35T, E36A, T39E, S68N, T69TI, K103R, V118I, D121HY, K122E, T139K, A158S, K173A, Q174E, D177E, G196K, T200A, I202V, Q207E, F214L, L228LHQ, V245Q, D250E S105I 
PTSW000727 SW000727 Unknown Unknown  V108I P4S, E6D, V35T, E36A, T39E, S48T, V60I, K122E, D123G, K166R, F171Y, K173A, Q174K, D177E, T200A, Q207E, V245Q, D250E R199R* 
PTSW000745 SW000745 Unknown Unknown   E6EA, V35T, E36A, T39E, S48T, K122E, D123GS, K166R, K173A, D177E, G196GE, T200A, E203EK, E204K, Q207D, R211K, V245Q, E248D, D250E  
PTSW000748 SW000748 Unknown Unknown   T27S, V35T, E36A, T39E, S48T, K122E, D123N, K173T, Q174QK, D177E, I178IM, G196E, T200A, E203D, Q207D, R211K, V245Q, S251N  
PTSW000755 SW000755 Unknown Unknown M184V K103N, V179E E28K, K32E, V35T, T39K, K43Q, S48T, V60I, K122E, D123N, K173A, D177E, T200A, Q207K, R211K, D250E, S251D  
PTSW000793 SW000793 Unknown Unknown   V35T, T39K, S48T, V60I, K122E, D123G, K166KR, E169D, K173A, Q174K, G196E, T200A, I202V, Q207E, R211RK, V245Q  
PTSW000814 SW000814 Unknown Unknown  K101KE, E138A V35T, T39G, K122E, D123S, S162SC, F171Y, K173T, Q174K, D177EG, V179I, I195IL, T200A, Q207E, R211K  
PTSW000823 SW000823 Unknown Unknown   K20R, V35T, E36A, T39E, E40D, S48T, V60I, K64KR, K102Q, K122E, S163T, T165I, K173A, Q174KN, D177E, I178M, T200A, Q207A, F214L, V245Q  
PTSW000825 SW000825 Unknown Unknown  V106M T27S, V35T, E36A, T39E, S48T, S105A, K122E, D123A, S162A, E169G, K173E, Q174K, D177E, T200A, Q207E, R211K, F214L, V245Q  
PTSW000851 SW000851 Unknown Unknown  E138A V35T, T39EQ, S48T, V60I, K122E, I135M, S162C, K173A, Q174R, T200A, Q207D, R211K, V245Q, D250E  
PTSW000860 SW000860 Unknown Unknown   P4PS, E6EK, K20R, V35T, E36A, T39E, S48T, V60I, K122E, D123G, K173T, T200TA, Q207EK, V245K, D250E  
PTSW000874 SW000874 Unknown Unknown   V35T, E36A, T39E, S48T, V60VI, V118VI, K122KE, I135T, T139TI, I142IT, K173T, D177E, T200A, Q207A, R211K, F214L, V245E, D250E, S251R  
PTSW000879 SW000879 Unknown Unknown   E6K, V8VI, V35T, E36A, T39E, S48T, E53D, K122KE, I135IV, I142V, S162H, K173A, Q174K, D177E, T200A, Q207D, R211K, V245E, K249R, D250E, S251N  
PTSW000890 SW000890 Unknown Unknown   V21I, E28R, K32E, V35T, E36A, T39E, S48T, K49R, V60I, K64KR, K122E, D123DN, A158AS, T165TI, K173A, Q174N, D177E, T200A, Q207A, R211RK, V245Q, D250DE  
PTSW000903 SW000903 Unknown Unknown  K103N V21VI, V35T, T39E, S48T, V60I, K102KR, K122E, D123G, K173A, Q174K, D177E, G196E, T200A, Q207T, R211K, V245Q  
PTSW000907 SW000907 Unknown Unknown  K101E, E138A E28EA, K32R, V35T, T39E, S48T, K64KR, K122E, D123S, I135LV, T139A, S162C, T165I, K173T, Q174K, T200A, Q207DN, R211K, D250E  
PTSW000910 SW000910 Unknown Unknown   V8VI, V35T, E36EA, T39E, S48T, V60VI, K122E, D123X, K173A, Q174K, D177E, T200A, Q207E, R211K, V245Q, P247PA, E248ED, D250E, S251D  
PTSW000924 SW000924 Unknown Unknown   K11Q, K22KR, V35T, T39E, S48T, D121Y, K122E, D123DE, I135T, S162C, K173A, Q174K, D177E, T200A, Q207E, R211K, V245E  
PTSW000957 SW000957 Unknown Unknown  K103N K11Q, V35T, T39E, S48T, K101R, D121Y, K122E, D123G, I135T, S162C, K173A, D177E, I178M, T200A, Q207N, R211K, V245Q V111VM 
PTSW000959 SW000959 Unknown Unknown   V21I, V35T, E36A, T39E, S48T, V60I, K122E, D123G, K173I, Q174K, T200E, Q207A, R211E, V245Q  
PTSW000969 SW000969 Unknown Unknown   I5V, E6K, K20R, T27I, V35T, T39D, S48T, K122E, S163T, T165I, K173T, Q174R, D177E, T200A, Q207E, R211K, V245Q, D250E  
PTSW000987 SW000987 Unknown Unknown  K103N, P225PH K20R, V35T, E36A, T39E, S48T, V60I, K102Q, K122E, K173A, Q174R, D177E, T200A, Q207E, R211K, V245E Q197T 
PTSW001008 SW001008 Unknown Unknown   V35T, E36A, T39E, S48T, K122E, D123X, S162C, K166KR, K173A, D177E, T200A, E204ED, Q207AV, R211K, V245Q  
PTSW001024 SW001024 Unknown Unknown  A98G, K103N I5IV, K11KR, K20R, V35T, E36A, T39E, S48T, K102Q, S162C, K173IT, D177E, V179VI, T200A, Q207E, R211K, F214L, V245Q  
PTSW001026 SW001026 Unknown Unknown   V35T, E36A, T39E, K43KQ, S48T, K122E, D123G, K173AT, Q197P, T200A, Q207EK, H208HY, R211RK, V245Q  
PTSW001034 SW001034 Unknown Unknown  E138EA V21I, V35T, E36A, T39E, S48T, K122E, S162C, K173T, D177E, T200A, Q207A, R211RK, V245K, E248D  
PTSW001035 SW001035 Unknown Unknown  K103N V35T, E36A, T39D, S48T, K122E, I135T, S162C, E169K, K173E, D177E, T200A, Q207E, R211K, V245Q  
PTSW001070 SW001070 Unknown Unknown M184V K103N, P225H K20KR, V35T, E36A, T39E, S48T, V90VI, K122E, D123S, I135M, K173A, D177E, T200A, Q207D, R211K, V241L, V245Q, E248T  
PTSW001074 SW001074 Unknown Unknown  K103N K32R, V35T, E36A, T39E, S48T, V60I, K122E, D123G, I142V, T165I, K173A, T200A, I202V, Q207A, R211K, V245Q, D250E  
PTSW001093 SW001093 Unknown Unknown M184V A98AG, K103N, P225H V35T, T39E, S48ST, V60I, K122E, D123N, I142V, K173AT, Q174K, D177E, G196E, T200A, Q207E, V245Q, D250E  
PTSW001098 SW001098 Unknown Unknown   K20R, V21VI, V35T, E36A, T39E, S48T, V60I, K104KR, K122E, D123G, K173A, D177E, I178L, I195IV, T200A, E204EK, Q207DEG, R211K, V245Q  
PTSW001119 SW001119 Unknown Unknown   K20R, V35T, E36A, T39E, E40D, K122E, D123G, S162C, E169D, K173A, I178L, T200A, Q207E, V245Q, E248D  
PTSW001122 SW001122 Unknown Unknown  K103N T27TA, V35T, E36A, T39E, S48T, K122E, S162C, K173A, D177E, I178IL, V179VI, T200A, E204EK, Q207E, R211RK, V245Q, D250E  
PTSW001125 SW001125 Unknown Unknown  V106VM V35T, E36A, T39E, S48T, K122N, S162C, K173KR, Q174R, T200E, E204D, Q207E, R211K, V245Q, E248N, D250E P225A 
PTSW001134 SW001134 Unknown Unknown   V35T, E36EA, T39E, S48T, K49KR, I135V, S162C, K173A, Q174K, D177E, Q197P, T200A, Q207A, R211K, V245H, D250DE  
PTSW001135 SW001135 Unknown Unknown   K20R, V35T, E36A, T39E, S48E, K49R, K102R, D121H, K122E, K166R, E169D, K173A, Q174K, D177E, I178M, T200A, Q207T, R211K, V245Q  
PTSW001175 SW001175 Unknown Unknown   V35K, E36EA, T39E, S48E, V60I, K122E, D123S, S162A, K173A, Q174K, D177E, I178M, G196E, T200TA, E203Q, Q207DE, V245M, D250E  
PTSW001196 SW001196 Unknown Unknown  K103N K20R, V35I, T39D, S48T, K122E, D123N, K173A, Q174R, D177E, I178L, T200TA, Q207D, R211K, P243T, V245Q, E248ED, S251SN  
PTSW001209 SW001209 Unknown Unknown D67N, K70R, M184V, K219E K103N, G190A V35T, E36A, T39E, S48T, V60I, K122E, D123G, K173A, Q174A, D177E, G196R, T200A, Q207E, R211K, V245Q  
PTSW001213 SW001213 Unknown Unknown   K20R, V35T, E36A, T39E, S48T, S162C, K166R, K173A, D177E, T200A, Q207E, V245Q, S251N  
PTSW001244 SW001244 Unknown Unknown   V35T, T39D, S48T, K122E, K173A, Q174KN, D177E, V189VI, T200TA, Q207D, R211K, V245Q  
PTSW001251 SW001251 Unknown Unknown  K103N E28A, V35T, T39E, S48T, K49KR, V60I, K122E, D123E, I135T, K173A, D177E, T200A, Q207E, R211K, V245Q  
PTSW001304 SW001304 Unknown Unknown  K103N V35T, E36A, T39D, S48T, K122KE, D123N, I135V, S162A, K173A, Q174K, D177E, T200A, Q207E, R211T, F214L, V245Q  
PTSW001333 SW001333 Unknown Unknown   V35T, E36M, T39E, S48T, K122Q, D123N, I135R, K173T, D177E, T200A, Q207E, R211K, V245Q  
PTSW001342 SW001342 Unknown Unknown   K11Q, V35R, T39E, S48T, D121Y, S162C, K173A, Q174K, P176S, T200A, Q207E, P243S, V245Q, D250E  
PTSW001344 SW001344 Unknown Unknown M184V  V35T, T39EK, K122E, I135IT, K173A, T200A, I202V, Q207K, R211HQ, V245Q  
PTSW001364 SW001364 Unknown Unknown   E6EK, K11KN, V35T, T39E, K43KR, S48T, V60I, K104KR, D121DH, K122E, I135IT, I142K, T165TI, K173A, Q174R, I178IM, Q197QE, T200A, Q207D, R211K, V245K, D250DE  
PTSW001368 SW001368 Unknown Unknown   V35T, E36A, T39E, S48T, E53ED, V60I, K122E, D123N, I135V, T139TI, K173T, T200A, Q207E, F214L, V245Q  
PTSW001415 SW001415 Unknown Unknown   V21I, V35T, E36A, T39E, S48T, V60I, K122E, D123S, T165I, K173T, D177E, T200A, Q207A, R211K  
PTSW001421 SW001421 Unknown Unknown M184V K103N, E138A V35T, T39E, S48T, E53D, V60I, K122E, D123G, K173A, D177E, I178L, T200A, E204K, Q207E, R211K, F214L, V245Q V111VM 
PTSW001426 SW001426 Unknown Unknown   V35T, E36A, T39E, S48T, K122E, D123G, K126KR, K166R, K173A, Q174K, D177E, V179I, T200E, Q207E, V245Q  
PTSW001431 SW001431 Unknown Unknown   V35T, E36A, I37X, T39E, S48T, K122E, A158S, S162A, K173T, D177E, T200A, Q207D, R211K, V245Q  
PTSW001441 SW001441 Unknown Unknown  K103KN V35T, E36A, T39E, E40ED, S48T, K104KR, K122KE, K166R, K173IT, D177E, T200A, Q207EK, R211K, V245Q V111VM 
PTSW001450 SW001450 Unknown Unknown K65KR, K70KE, M184V A98G, K101E, Y181C, G190A, H221Y T7I, E28EK, V35T, T39E, S48T, K122E, D123N, I135T, K173T, Q174K, D177E, I178V, V179I, T200A, I202V, Q207D, R211K, V245Q, D250E  
PTSW001461 SW001461 Unknown Unknown  V106I V35T, E36A, T39E, S48T, K122E, D123T, S162C, K173A, Q174R, D177G, I178L, G196E, T200A, Q207EG, R211K, V245Q, E248D, D250E, S251D  
PTSW001462 SW001462 Unknown Unknown   V35T, T39E, S48T, V60I, K64KR, K122E, D123DN, I135V, I142IMV, K173A, Q174KR, T200A, Q207A, R211K, V245Q  
PTSW001472 SW001472 Unknown Unknown  K101KE, E138A V35T, E36A, T39E, E40D, S48ST, V75VL, K122E, D123N, I135IT, I142V, S162C, R172K, K173Q, Q197QL, T200A, I202V, Q207E, R211K, V245Q, S251D K43KIM 
PTSW001475 SW001475 Unknown Unknown   V21I, V35M, E36A, T39E, S48T, K122E, D123G, I135V, S162C, K173A, Q174K, T200A, Q207G, R211K, V245Q  
PTSW001485 SW001485 Unknown Unknown   V35T, T39E, S48T, K122E, D123DG, K173A, Q174K, D177E, V179VI, T200A, I202V, Q207G, R211K, V245Q, S251R  
PTSW001486 SW001486 Unknown Unknown   V35T, T39A, S48T, K122E, D123G, T165I, K173S, Q174K, D177E, I178L, G196M, T200A, Q207E, R211K, V245Q, D250E  
PTSW001488 SW001488 Unknown Unknown   T27A, V35T, E36A, T39E, S48T, V60I, K122E, D123S, K166R, K173T, D177E, I178L, T200A, Q207N, R211K, V245Q, D250E  
PTSW00G700 SW00G700 Unknown Unknown  K103N V35T, E36A, T39E, S48T, V60I, K122A, D123X, K173A, Q174KR, D177E, T200A, Q207E, R211K, V245Q, D250DE