Stanford University HIV Drug Resistance Database - A curated public database designed to represent, store, and analyze the divergent forms of data underlying HIV drug resistance.

References

Author Karamov (2018)
Title HIV-1 Genetic Diversity in Recently Diagnosed Infections in Moscow: Predominance of A(FSU), Frequent Branching in Clusters, and Circulation of the Iberian Subtype G Variant.
Citation ARHR
SelectedGene RT
SelectedSpecies HIV1
SelectedGroup M
SelectedType Clinical
NumIsolates 62
NumPts 62
Subtype A, B, G, CRF01_AE

 

Clinical RT Isolates


SubjectIsolateNRTIsNNRTIsNRTI MutNNRTI MutCommonUnusual
RU_MOS_01 RU_MOS_01 None None   E6D, V35T, E36D, T39M, K122E, D123S, A158S, K173S, Q174K, D177E, T200A, E203D, Q207A, R211S, V245K, E248D, A272P, T286A, E291D, V292I, I293V, P294T, I326V, G335D, R356K, M357K  
RU_MOS_02 RU_MOS_02 None None   V35T, E36D, T39M, V60I, K122A, D123S, S162C, E169D, K173A, Q174K, D177E, I178L, Q207A, R211S, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294T, R307K, G333E, R356K, M357R  
RU_MOS_03 RU_MOS_03 None None   K11T, K20R, V35K, E36D, T39D, V60I, D121H, K122E, D123G, I142T, K173L, Q174K, I178L, V179I, Q207A, R211S, E248D, A272P, T286A, E291D, V292I, I293V, P294T, I326V, G335D, R356K, M357K  
RU_MOS_04 RU_MOS_04 None None A62V  K11T, V35M, E36N, T39E, E53Q, K122E, D123N, K173L, Q174K, D177E, T200A, Q207A, R211S, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294T, D324E, I326V, R356K, M357K  
RU_MOS_05 RU_MOS_05 None None   V35T, E36D, K122E, D123S, K166R, K173V, Q174K, D177E, Q207A, V245M, A272P, V276VI, K277KR, T286A, E291D, V292I, I293V, P294T, G335D, R356K, M357R  
RU_MOS_06 RU_MOS_06 None None  E138A E6D, K11A, K20R, V35T, E36A, T39N, K122E, D123N, I135T, R172K, K173S, Q174K, D177E, I202V, Q207D, R211S, E248D, A272P, T286A, E291D, V292I, I293V, P294T, K311R, I326V, G335D, R356K, M357K  
RU_MOS_07 RU_MOS_07 None None A62V  K11T, V35I, T39E, I50V, K122E, D123N, I135T, K173L, Q174K, D177E, I178V, Q197P, T200A, Q207A, R211S, A272P, T286A, E291D, I293V, P294T, D324E, I326V, G333E, T338S, R356K, M357K  
RU_MOS_08 RU_MOS_08 None None   I5V, K11T, V35T, E36D, T39M, K122E, D123N, A158S, K173L, Q174K, D177E, Q207A, I244IL, V245M, L246LI, E248D, A272P, T286A, E291D, V292I, I293V, P294T, V317A, G333E, R356K, M357K  
RU_MOS_09 RU_MOS_09 None None   S162C, Q197R, T200A, R211K, V245M, K277R, A288S, I293V, P294T, E297K, E312V, I329L, G333E, M357I  
RU_MOS_10 RU_MOS_10 None None   V35T, E36D, T39M, K122E, D123S, I135T, S162A, T165I, K173S, Q174K, D177E, Q207A, E248D, A272P, T286A, E291D, V292I, I293V, P294T, I326V, A327V, G335D, R356K, M357R  
RU_MOS_11 RU_MOS_11 None None   V35T, V60I, A98S, K122E, D123S, I135T, K173I, Q174K, T200E, Q207K, R211S, V245Q, E248D, D250E, A272Q, T286A, E291D, V292I, I293V, E297A, D320E, S322T, D324E, I329V, Q334P, F346Y, R356K, M357R  
RU_MOS_12 RU_MOS_12 None None   V35T, T39M, V60I, K122E, D123S, I135K, K173S, Q174K, Q207A, R211S, V245M, E248D, A272P, T286A, E291D, V292I, I293V, P294T, I326V, G335D, R356K, M357K  
RU_MOS_13 RU_MOS_13 None None  E138K K20R, V35I, K102M, I135M, S162A, D177E, R211K, V245E, A272S, T286A, I293V, P294T, E297R, E298D, L325V, I341F  
RU_MOS_14 RU_MOS_14 None None   K11T, V21I, V35T, E36D, T39M, D121H, K122E, D123G, I135K, S162C, R172K, K173A, Q174EK, D177E, Q207A, R211K, E248D, A272P, V276I, T286A, E291D, V292I, I293V, P294T, G335E, R356K, M357K  
RU_MOS_15 RU_MOS_15 None None   K102KR, D123E, I142T, S162C, D177E, I178V, V245M, T286A, A288S, I293V, I329V, G333D  
RU_MOS_16 RU_MOS_16 None None   K49R, I50V, E53EQ, D86E, D121H, K122E, I135T, D177E, R211K, F214L, V245Q, D250E, I257L, A288S, I293V, V317A, I326V, A327V, M357V  
RU_MOS_19 RU_MOS_19 None None   K11T, D17N, V35T, T39N, K122E, D123E, R211T, F214L, V245M, A272P, K277R, I293V, D324DE, I326V L149I 
RU_MOS_20 RU_MOS_20 None None A62V  K11T, V35K, E36D, T39E, I50V, D121H, K122E, D123N, A158S, K173IL, Q174K, D177DE, I180V, T200A, Q207A, R211S, V245T, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294T, I326V, G335D, R356K  
RU_MOS_21 RU_MOS_21 None None A62V  K11T, K32E, V35I, E36D, T39K, I135R, A158S, K173L, Q174K, D177E, T200A, Q207A, R211S, V245K, A272P, T286A, E291D, V292I, I293V, P294T, I326V, G335E, R356K, M357K  
RU_MOS_22 RU_MOS_22 None None A62V  K11T, V35I, E36D, T39N, V90I, D121H, K122E, A158S, K173S, Q174K, D177E, T200A, I202V, Q207G, V245N, E248D, A272P, T286A, E291D, V292I, I293V, P294T, G335D, R356K, M357K  
RU_MOS_23 RU_MOS_23 None None A62V  K11T, K32Q, V35T, E36A, T39D, V90I, K122E, D123S, I135T, A158S, S162C, K173I, Q174K, E194K, G196E, Q207A, R211S, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294T, V317A, I326V, G335D, R356K, M357R  
RU_MOS_24 RU_MOS_24 None None A62V  K11T, V35I, E36D, T39K, K122E, D123N, I135T, K173L, Q174K, T200I, Q207A, R211S, V245M, E248D, A272P, K277R, T286A, E291D, I293V, P294T, I326V, G335D, R356K, M357K  
RU_MOS_25 RU_MOS_25 None None A62V  K11T, V35I, E36D, T39K, K122E, D123N, A158S, K173S, Q174K, D177G, T200A, Q207A, R211S, E248D, A272P, T286A, E291D, V292I, I293V, P294T, D324E, I326V, I341L, R356K, M357R  
RU_MOS_26 RU_MOS_26 None None   D123E, I135T, I142T, R211Q, F214L, V261I, K277R, L283I, I293V, I326V  
RU_MOS_27 RU_MOS_27 None None   V35T, E40D, V60I, A98S, K122E, D123S, K173I, Q174K, I195T, G196E, T200A, Q207K, R211S, V245Q, E248D, D250E, A272P, K277R, T286A, E291D, V292I, I293V, E297A, S322T, D324E, I329V, Q334L, F346Y, R356K, M357R  
RU_MOS_28 RU_MOS_28 None None   K11Q, D121H, K122E, D123S, I135T, S162C, T200A, A272P, K277R, T286A, E297K, L301M, A327V, M357T  
RU_MOS_29 RU_MOS_29 None None  K103N D123E, I135T, S162C, D177E, T200A, F214L, K277R, A288S, I293V, I329V, G333E, F346H, K347E, R356K  
RU_MOS_30 RU_MOS_30 None None A62V  K11T, V35T, E36N, T39K, I50V, V60I, K122E, D123N, K173L, Q174K, D177E, Q207A, R211S, V245M, E248D, A272P, T286A, E291D, I293V, P294T, D324E, R356K, M357K  
RU_MOS_31 RU_MOS_31 None None   D123E, I142T, A158S, K166R, D177E, V245M, A272P, K277R, I293V, E297K, E328D, I329V, G333E  
RU_MOS_32 RU_MOS_32 None None  K103N, E138A K20R, V35T, T39M, V118I, K122E, D123S, I135T, I142T, A158S, S162A, R172K, K173V, Q174K, I178V, V179I, G196E, Q207A, R211S, F214L, V245M, E248D, A272P, V276VI, K277R, T286A, E291D, I293V, P294T, G335D, R356K, M357K  
RU_MOS_33 RU_MOS_33 None None A62V E138A K11T, V35T, E36D, T39N, K122E, D123N, A158S, T165I, R172RK, K173L, Q174K, G196E, E204Q, Q207A, R211S, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294T, D324E, G335D, R356K, M357K  
RU_MOS_34 RU_MOS_34 None None   K11T, V35I, T39E, K49R, I50V, A62T, S68G, K122E, D123S, I135T, T139I, K173L, Q174K, Q197K, Q207A, R211S, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294T, G335D, R356K, M357R D256N 
RU_MOS_35 RU_MOS_35 None None   V118I, D123E, T139V, S162C, K173R, D177E, T200L, R211K, F214L, V245E, K277R, A288S, I293V, I329V, G333E  
RU_MOS_37 RU_MOS_37 None None   V35T, A98S, I135V, I142V, D177DN, G196E, H208Y, R211K, V245T, E248D, D250E, A272P, K277R, T286A, E297K, K311R, I329V, Q334L  
RU_MOS_38 RU_MOS_38 None None   V21I, V35T, E36D, T39K, K122E, D123S, I135M, A158S, K173S, Q174K, D177E, Q207A, R211S, V245K, A272P, T286A, E291D, V292I, I293V, P294T, K311R, I326V, R356K, M357Q  
RU_MOS_39 RU_MOS_39 None None A62V  K11T, V35I, E36D, T39K, V90I, K122E, D123S, I135V, A158S, K173I, Q174K, D177E, T200M, Q207A, R211S, V245I, E248D, A272P, V276I, T286TA, E291D, V292I, I293V, P294T, I326V, G335D, R356K, M357R  
RU_MOS_41 RU_MOS_41 None None   I135T, I178M, Q207R, R211Q, V245M, A272P, K277R, K281R, A288S, E297K, E328D, I329V, G333E  
RU_MOS_42 RU_MOS_42 None None   E6D, V35T, T39K, K43E, K122E, D123S, S162C, K173I, Q174K, D177E, I178V, T200I, Q207A, R211S, K238R, V245E, A272P, E291D, V292I, I293V, E312A, D324E, I326V, I329V, G335D, M357K  
RU_MOS_43 RU_MOS_43 None None   P4H, K11T, V35I, E36D, T39K, K64R, K122E, D123N, K173L, Q174K, D177E, Q207A, R211S, E248D, A272P, T286A, E291D, V292I, I293V, P294T, I326V, G335D, Y342F, R356K, M357R A62C 
RU_MOS_44 RU_MOS_44 None None   V35T, V60I, A98S, D121H, K122E, D123S, K166R, K173I, Q174K, D177E, T200A, Q207K, R211S, V245Q, E248D, D250E, A272P, T286P, E291D, V292I, I293V, E297A, S322T, I329V, Q334L, F346Y, R356K, M357R  
RU_MOS_45 RU_MOS_45 None None   V35T, E36D, T39M, V60I, S68G, K122E, D123N, I135T, K173L, Q174K, D177E, G196E, T200A, Q207A, R211S, V245M, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294T, L295M, V317A, G335D, R356K, M357Q  
RU_MOS_46 RU_MOS_46 None None A62V  K11T, V35I, T39K, K82R, K122E, D123S, I142T, K173L, Q174K, Q207A, R211S, F214FL, V245M, E248D, A272P, K277R, T286A, E291D, I293V, P294T, I326V, Q334QL, G335GD, R356K, M357K  
RU_MOS_48 RU_MOS_48 None None  E138A E6K, K122E, I142V, V179I, E204K, Q207E, R211K, D250E, K277R, T286A, E297K, I329V, G333E, R356K  
RU_MOS_49 RU_MOS_49 None None A62V  K11T, V35I, E36D, T39E, T69S, K82KR, D121H, K122E, D123DN, I135T, A158S, K173S, Q174K, D177E, I178V, T200AV, I202IV, Q207A, R211S, E248D, A272P, T286A, E291D, V292I, I293V, P294T, V317A, I326V, G335D, R356K  
RU_MOS_50 RU_MOS_50 None None   V35T, A98S, S162A, I195T, G196E, H208Y, R211K, V245T, E248N, D250E, S251I, A272P, K277R, T286A, E297K, K311R, I329V, Q334L  
RU_MOS_51 RU_MOS_51 None None   V8I, K101R, D123E, S163T, T165I, K166R, V179I, I180V, T200A, Q207A, R211N, K277R, T286A, A288S, I293V, E297R, L301I, S322T, I329V, G333E, R356K  
RU_MOS_54 RU_MOS_54 None None A62V  E6A, K11T, V35T, E36D, T39K, K43R, K122E, D123N, A158S, T165I, K173L, Q174K, D177E, T200I, E204Q, Q207A, R211S, V245T, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294T, L295M, V317A, I326V, G335D, A355T, R356K, M357K  
RU_MOS_56 RU_MOS_56 None None  V106I K20R, V35T, T39A, E40D, D123E, P176A, I178IM, T200A, I202V, R211K, A272P, K277R, I293V, I329V, Q334D  
RU_MOS_57 RU_MOS_57 None None A62V  K11T, K32N, V35I, T39K, I50V, D121H, K122E, P133L, I135T, A158S, K173L, Q174K, D177E, Q207A, R211S, V245T, P247A, A272P, T286A, E291D, V292I, I293V, P294T, I326V, G335D, R356K, M357K D123R 
RU_MOS_58 RU_MOS_58 None None  K101KE V35T, T39M, K122E, D123S, I142V, S162D, K166R, K173A, Q174K, D177E, Q207A, R211S, V245T, A272P, K277R, T286A, E291D, V292I, I293V, P294T, I326T, G335D, R356K, M357K  
RU_MOS_59 RU_MOS_59 None None A62V  K11T, V35R, E36D, T39Q, K49R, I50V, V90I, D123N, A158S, K166Q, K173L, Q174K, D177E, I178V, T200V, Q207A, R211S, E248D, A272P, K277R, T286A, E291D, V292I, I293V, P294T, I326V, G335D, R356K, M357K  
RU_MOS_62 RU_MOS_62 None None A62V  K11T, K32Q, V35I, E36D, T39K, K122E, D123N, I135R, K173V, Q174K, D177E, I195K, G196E, Q207A, R211S, V245K, E248D, A272P, T286A, E291D, V292I, I293V, P294T, I326V, R356K, M357Q  
RU_MOS_63 RU_MOS_63 None None   V35T, V60I, A98S, K122E, D123S, I135V, K173M, Q174K, T200E, Q207K, R211S, V245Q, E248D, D250E, A272P, T286A, E291D, V292I, I293V, E297T, S322T, D324E, I329V, Q334L, G335D, F346Y, R356K, M357R  
RU_MOS_64 RU_MOS_64 None None A62V  K11T, V35I, T39E, K122E, D123N, I135T, K173L, Q174K, D177E, Q207A, R211S, V245I, E248D, S251H, A272P, T286A, E291D, V292I, I293V, P294T, I326V, R356K, M357Q  
RU_MOS_70 RU_MOS_70 None None   K11T, V35T, T39E, V60I, S68G, D121Y, K122E, I135AV, K173S, Q174K, D177E, T200I, Q207A, R211S, V245M, E248D, A272P, T286A, E291D, V292I, I293V, P294T, V317A, I326V, R356K, M357K  
RU_MOS_71 RU_MOS_71 None None A62V  K11T, V35T, E36D, T39K, V60I, K122E, D123S, I135R, A158S, K173L, Q174K, D177E, Q207A, R211S, V241I, E248D, A272P, T286A, E291D, V292I, I293V, P294T, I326V, Q334N, G335S, R356K, M357Q  
RU_MOS_72 RU_MOS_72 None None   K11T, V35T, E36D, T39E, K102R, K122E, D123S, A158S, K173L, Q174K, D177E, T200A, E203D, Q207A, R211S, E248D, A272P, V276I, T286A, E291D, V292I, I293V, P294T, I326V, R356K, M357Q  
RU_MOS_74 RU_MOS_74 None None   E6D, K11T, V35T, E36D, T39R, K122E, D123S, I135M, I142T, S162Y, K173L, Q174K, I195L, T200I, Q207A, R211S, I244V, V245M, E248D, A272P, T286A, E291D, I293V, P294T, E297K, V317A, I326V, G335D, R356K, M357K  
RU_MOS_75 RU_MOS_75 None None   K11T, K20R, V35I, T39N, K122E, D123G, S162T, K173L, Q174K, D177E, I178M, E203D, Q207A, R211S, V245T, E248D, A272P, K277R, Q278H, T286A, E291D, V292I, I293V, P294T, I326V, G335D, R356K, M357K  
RU_MOS_76 RU_MOS_76 None None A62V  K11T, V35I, E36D, T39K, K122E, D123N, A158S, S162N, K173L, Q174K, D177E, I178V, Q207A, R211S, V245M, E248D, A272P, V276I, T286A, E291D, V292I, I293V, P294T, K311R, D324E, I326V, G335D, F346C, R356K, M357R  
RU_MOS_77 RU_MOS_77 None None A62V  K11T, V35I, T39K, V60I, K64R, K122E, D123N, A158S, K173L, Q174K, D177E, T200A, Q207A, R211S, E248D, Y271F, A272P, T286A, E291D, I293V, P294T, I326V, Q334E, R356K, M357K  
RU_MOS_78 RU_MOS_78 None None A62V  K11T, V35I, E36D, T39N, V60I, K122E, D123N, A158S, T165I, F171Y, K173S, Q174K, D177E, T200A, Q207A, R211S, E248D, A272P, T286A, E291D, V292I, I293V, P294T, I326V, G335D, R356K, M357K  

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